rna8897, rna8897 (mRNA) Nannochloropsis gaditana

Overview
Namerna8897
Unique Namerna8897
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length909
Alignment locationKK037250.1:414303..415602 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100065g26.7396.mrna
Orig protein idgnl|cribi|Naga_100065g26.7396
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:414303..415602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100065g26gene8626Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21805.1cds8867Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8897rna8897-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8897 ID=rna8897|Name=rna8897|organism=Nannochloropsis gaditana|type=mRNA|length=909bp
GAGGTGGGGATGGACTCTCTCTGAGCCTTCTTGCCCGTCCTAGGTCCCCT
CGGCAACGAGCATCCTCATATTGCCCTGTTTGGTATTCCAATCCTCTGCA
ACTCCTCTATCACTACAGTATCCTATGGGAAAGAAGTCCGACGTGGTTTT
GCCTGCTCGCGAGTACGCCCCTTTGGAGGCGCGGACGGATATTGTTGCTT
GGACCAAGGGAAGAGAGGCTCGAGCACGAGAAGAGGCGATTGCTATCGAA
ATGGTGAAGAATTTGCGCGATCAAGTGTCCTGGTGCCAACGCAAGCACCC
GGTTACTCATTATTATGATTGCGCCGAGCTGGTGGGAAAGTACTTAAAGC
TCGTCAGGGATCCTTTGCGCGGCGTAAAGCTACCAGGCGCTGCATCCGAA
GAATGAGAAATGAAACAAGAGCTCTTGGGTCTTGAGGATGACGCGGGAGG
CTTCAGCACCGAAGGAGGGCCAAGGGGGAAAGCGCGGGGGATGGGGAGGG
AGCCGAAGAACGAAGACACCATGTAGAACCGTTGCCGCGAAGCGCTTCAC
GATGATAATATTGTCGGATTGTTTTAGGACGTCACTTTGTTACCAAGATG
CTATCATTTGTTCACGAGCGGCACATCTTATAAACAGCCTTGGCATCTCT
GCCTGTCATGCGCCTCCGCACGAATGCCGTCGTCCTCCTCCCGGTCCCCT
TACAGCGAAACTATCATATGAATTGCCGGCTTCAGTTCAATAGGTCATCC
TATTTACCTTGCTATTGCCTCAGTATCCCGAATTTTTCACGCGGGGCAGC
CCCGGGTCTCTACAATACTGTACTAAGCGAAATTATCCTACATATCGTGG
CTTCACAACAATACCTGCAAAGCTGTACATCACGAATGAATCGAAATTTT
AAACAAATT
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protein sequence of rna8897

>rna8897-protein ID=rna8897-protein|Name=rna8897|organism=Nannochloropsis gaditana|type=polypeptide|length=101bp
MTREASAPKEGQGGKRGGWGGSRRTKTPCRTVAAKRFTMIILSDCFRTSL
CYQDAIICSRAAHLINSLGISACHAPPHECRRPPPGPLTAKLSYELPASV
Q
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mRNA from alignment at KK037250.1:414303..415602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8897 ID=rna8897|Name=rna8897|organism=Nannochloropsis gaditana|type=mRNA|length=1300bp|location=Sequence derived from alignment at KK037250.1:414303..415602- (Nannochloropsis gaditana)
GAGGTGGGGATGGACTCTCTCTGAGCCTTCTTGCCCGTCCTAGGTCCCCT
CGGCAACGAGCATCCTCATATTGCCCTGTTTGGTATTCCAATCCTCTGCA
ACTCCTCTATCACTACAGTATCCTATGGGAAAGAAGTCCGACGTGGTTTT
GCCTGCTCGCGAGTACGCCCCTTTGGAGGCGCGGACGGATATTGTTGCTT
GGACCAAGGGAAGAGAGGCTCGGTAAGTCGAAGCTTGCGTTGACATAACA
TAGATGCCTTCAGGCCCACACGGCCTTCTCTACATATAGCAGTCTTCTGA
TACAAGAGAATGTATTGCGGTTGTCTGATTTTTCCTCATATGCGCCACTC
TTTAACGGGTGCAGGAGTTGGGGTGCAGGAGTTTTGAGGCAACGACATTG
ATGCGTGTCGTGGCAGGGCTTATCTTTCATTTTAGGGGTCTATTCACCTG
TCAATCCGCGTATTACCACAAATCCACATATCAGAGCACGAGAAGAGGCG
ATTGCTATCGAAATGGTGAAGAATTTGCGCGATCAAGTGTCCTGGTGCCA
ACGCAAGCACCCGGTTACTCATTATTATGATTGCGCCGAGCTGGTGGGAA
AGTACTTAAAGCTCGTCAGGGTAAGGAGCCTTCTAAATAAGGGATCAATC
AAGCTTTGAATTATTATGGAAGAGAGTAGAAAATGTGAATGAGGTCTGGG
TTCTGACTGTAGCCCCTGGACTTATCATTCCATGCCCTCCTGACAACAGG
ATCCTTTGCGCGGCGTAAAGCTACCAGGCGCTGCATCCGAAGAATGAGAA
ATGAAACAAGAGCTCTTGGGTCTTGAGGATGACGCGGGAGGCTTCAGCAC
CGAAGGAGGGCCAAGGGGGAAAGCGCGGGGGATGGGGAGGGAGCCGAAGA
ACGAAGACACCATGTAGAACCGTTGCCGCGAAGCGCTTCACGATGATAAT
ATTGTCGGATTGTTTTAGGACGTCACTTTGTTACCAAGATGCTATCATTT
GTTCACGAGCGGCACATCTTATAAACAGCCTTGGCATCTCTGCCTGTCAT
GCGCCTCCGCACGAATGCCGTCGTCCTCCTCCCGGTCCCCTTACAGCGAA
ACTATCATATGAATTGCCGGCTTCAGTTCAATAGGTCATCCTATTTACCT
TGCTATTGCCTCAGTATCCCGAATTTTTCACGCGGGGCAGCCCCGGGTCT
CTACAATACTGTACTAAGCGAAATTATCCTACATATCGTGGCTTCACAAC
AATACCTGCAAAGCTGTACATCACGAATGAATCGAAATTTTAAACAAATT
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Coding sequence (CDS) from alignment at KK037250.1:414303..415602-

>rna8897 ID=rna8897|Name=rna8897|organism=Nannochloropsis gaditana|type=CDS|length=306bp|location=Sequence derived from alignment at KK037250.1:414303..415602- (Nannochloropsis gaditana)
ATGACGCGGGAGGCTTCAGCACCGAAGGAGGGCCAAGGGGGAAAGCGCGG
GGGATGGGGAGGGAGCCGAAGAACGAAGACACCATGTAGAACCGTTGCCG
CGAAGCGCTTCACGATGATAATATTGTCGGATTGTTTTAGGACGTCACTT
TGTTACCAAGATGCTATCATTTGTTCACGAGCGGCACATCTTATAAACAG
CCTTGGCATCTCTGCCTGTCATGCGCCTCCGCACGAATGCCGTCGTCCTC
CTCCCGGTCCCCTTACAGCGAAACTATCATATGAATTGCCGGCTTCAGTT
CAATAG
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Synonyms
Publications