rna8891, rna8891 (mRNA) Nannochloropsis gaditana

Overview
Namerna8891
Unique Namerna8891
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2716
Alignment locationKK037250.1:404292..405685 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100399g3.1192.mrna
Orig protein idgnl|cribi|Naga_100399g3.1192
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:404292..405685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100399g3gene8621Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8891rna8891-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21814.1cds8861Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8891 ID=rna8891|Name=rna8891|organism=Nannochloropsis gaditana|type=mRNA|length=2716bp
AGGGACATCGAGCTGGAAAGGAGCGAGCTGCAATTACCAAAAATCAGGAG
TCTCGTGCTCCTTGGTACCTGACTGTACCGCAAAAGTGGCCTAGATAAGA
ACATTTGTGAAGAGAATGGGCTTTTCAAGACGGTCTCTGTGACAAGTGCC
ACTCGTGATTTATTTTGCGGGTGTCTTGCTAGGGATCGCTTGACACTCAT
GAATTCAGAGGGCTTGTACTGAAGTTTAGCTATGAAATGACATCATATTC
GGGCGTTGTCACTATGAAATTATGTCACAAGAAATCATGACATGTTTTGA
AAAAGTGCCACGAGAAAACAAAATGCTCCGCAGTAGTAGTAAAAAGTTGC
CACATATACCCAAACACAATTTGTAAGACTGGGCTGCCATCCTCCTCGAA
CGTTGTGACTAATGATGCACTAGCACACAATTACATCTCCTTTCCGCACA
ATTAATACTTATAGCTTTCTGCTATTTGCTATGCCTTACGCTTTACAAAA
TCAGAGACGTCTCTGCACGTTTTTTATCAGCTTTCTTACATTTCTACCTC
ATAGCTGGTGAAAATAGTTGAACATTTCAACTCCTTCCGATTGCCTTTCC
TTCGTCTCCCACTGTCTCACGGGCATTACTAGTAGGATTTTCCTAGTGAT
ATCACAAAATTCTCCGACGTGTTTACCACAATCAGGACATGGGGAAAAGC
GTCCTCACGTGAGATTCCCCGTATCAACCATACAACGTTGAAAGCTGCGA
GACCTTATGAATTTCTGGAGCAGTCACATACACTAAATTGCACATGTAAA
GCCTTTTTTTTTCGCGCATTTCAATAGCCGCGAGGAATGTAGTTTAGAAT
GAAAAACATCCAAACATGTTTTCAGCGTCTCACTTCCCCTTGCCCGTCTG
TCTCGCCTACGAAACCAGCGAAGGCTCATGTTCCACGCTTGAAAACCGTG
CCGCTCACGCACTGCGGGCCACCACGGACATTTTAGAACAACTTCCCTCC
TTCCTCTTTTTCTGACCAGGGATCAATGACGGACGGCAGCAGCAATGGCA
CTGCCGGTGAAAGTGTCAGCGCTGTACTGCCACTCCGGCGACGTGTGCCA
CCCGCAGCTCGACGCCGTCACGACCGTCGTAGACCTCTGCCGTGGCGGCG
GGGGCAAGCCGCCTTGTCGCAAAGCCTTACAACGTCAGACTCCTCCCTTA
TTTTCCCCCTCTCCACGACGGGAGGAAGCCACTATGTCACTCTGGAGATC
GGGACTCCACCGCAGGCGCAGGCAGTTATTGTCGACACGGGCAGTGCCTG
GGTGGCATTTGGGTGTGCTCCTGGCTGTGACATGTACTGTGGCGAACATG
TCCACCCATTCTTTGCGTATAATGAGAGCTCCAGCGCTCGAATCCTCAAA
TGTGGGGAATGCAGCACCCAATGCTTGGATGATTTGTGCCTGGTCACGCA
ACACTACTCCGAGGGCAGCGCGTGGCGGGCCTTCTCGGTGGAGGACAGCG
TTGGTTTTCATACTGAGCCCGGCACGCGCCAGGCTCCAACAAATGTGCCT
CCGACGACCGTTCCCTTTGTGTTCGGTTGCCAGACCAAACTCACTGGTCT
TTTCGTTCCGCAGCTGGAAAACGGCATCATGGGTCTCTCTCGCGGCCCTG
AGAACCTCGTCTCCCACATGCGGGCCGCCGGGCGCATCCCGCGGGCGGCT
TTCTCCCTCTGTTTCCACGAGCATCCTAACGACGGGGGCTGGATGACCGT
GGGCACTCTCGATGATGCGACCAGCAGCAGTCGTGCCTCGCGGGACCTGG
GAGAGGGTGCGGCCCAGGATGGAGGAGACCAGGGGGGGGGCAATGGCCTA
TGCCTCCCTGACGCCCTCCCCCACCGGCTGGTTCCTGGTCGAGCTTCGCG
CCCTTTTCCTGGGGGGCCACATCCTCACAGAGTCGGACGCTCCCGTTTCT
CCCGCTGACTCCCCCTCTACCCCGCCCACCCGGCGCCGGCATGCTCTTTT
GGACTCGGGAACCACCGACACCTACATGCTGCGCTCACTCCGCCCCTCGT
TCTCCTCCCAATTCTCCCGCGCCACCAGGGGGCGTCTCCCTTTCGTGCCC
GGGGCGCCCTACCGGCTGTCCATGTACGAATTACTCCTGCTGCCCGCCTT
GGAGGTGGATCTTGGCGAGGAGCAGGCGGGGGCCGAGAGGACGGGGGCCC
GTCTGTCCATCCCGCCCATGTCCTATATGGAGGAGCAGAGGGAGGGCGAG
AATGGGAATGGGGAGGAGCGGGAAAGTGAGACGGAGGGGCAGGGGCAGGT
TGCGCGGACAGTGTGGGTGCCGCGCCTGTATTTCACAGAGGCCTCCCTGG
CCATCCTGGGGTCGAACGCCCTCCGCGGTCAGGAGGTGCTCTTCGACATG
GAGGGAGGGAGGGTGGGGGTCCGGTCCCTGCCCTCCTGCTCCCACCGGCG
ACGGGCGGCCGCGTTGGCGTGCGAGGAGCAGTGTGGGAGGCTCTCTGCCT
CCGCGTCTTCCCCCCCTGCCTCGCCTGTTTGTCGTCTGGATGGGGTCACG
GACACGTCTGCCTGCCACGCCACCTGTGGTCTGGCCAGCGAATGGGAGGA
AGCGACTGGCGGTCGCTCCTCCGGCGTCCGTCCCGGCGAGAGATTCGGAG
CACCCAGTGAGGGAGTCAGCGACGAGGGAACTAGCGTCGATCCCTGGGGC
TCGGACAGGGCGAGCG
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protein sequence of rna8891

>rna8891-protein ID=rna8891-protein|Name=rna8891|organism=Nannochloropsis gaditana|type=polypeptide|length=209bp
MEAVRWACRDAEGTYIPLLRGLPHDFCARNQEGKYCLEAYMPLLSGCPSS
VNCTASLSPLCGALQDTGCCFQHLLPRHPQAADLSFHCPRSQDTPPACPP
PPDTLFGPGSLPLSAEPVTSLSSWGRSLTASEIVLLGSLSLLSLLLVAVV
PRWARALASRGSLGAWYQHLLRTISRRPSVSSVGGDGVAGETDSLTKEIE
RGTPRAQCV
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mRNA from alignment at KK037250.1:404292..405685+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8891 ID=rna8891|Name=rna8891|organism=Nannochloropsis gaditana|type=mRNA|length=1394bp|location=Sequence derived from alignment at KK037250.1:404292..405685+ (Nannochloropsis gaditana)
ggcgggcccTGCCCCCCACTGCAGCCTCCGCAGCGCACGCCcagggcaga ggcggaggatagGAACCGTCTGGCCGCCGCCCAATGGAGGCAgtgtcgct ccctcctcttctcgggTGCTCCTGGATGCGCCGATTTGGCGCTtgccctc ctaccccctcccaAATTCCACGGCCCATCCACCCACGAGAGCGCGGAGAA CTTCCCCTCGGGAGACCtgccttccccgtcccttcTGTGCAGCAATCCCT GCATGGAAGCCGTACGATGGGCCTGTCGGGACGCCGAAGGCACCTACATT CCGCTGCTGAGAGGTCTTCCCCACGACTTCTGCGCGCGAAaccaagaagg aaaataTTGCTTGGAGGCATACATGCCCCTTCTGTCAGGGTGTCCCTCTT CAGTAAACTgcactgcctccctttcccccctctgcgGGGCCCTCCAAGAC ACGGGCTGTTGCTTCCAGCATCTATTGCCCCGCCATCCACAAGCTGCCGA CCTCAGCTTCCATTGTCCTCGCTCCCAAGACACCCCCCCGGcctgtcccc ctccgccggACACGCTCTTTGGACCGGGCAGCCTGCCTCTCTCGGCCGAG CCCGtcacctctctttcctcctgggGCCGCAGTCTCACGGCGAGCGAGAT CGTCCTTCTGGGTAGCCTgagcctcctctccctcctccttgtggcCGTTG TGCCGAGATGGGCCCGCGCCCTGGCCTCGCGGGGTTCTCTTGGGGCGTGG TACCAACACCTACTGCGAACAATCTCCAGGAGACCCTCGGTTTCCTCCGT CGGAGGGGATGGCGTGGCGGGTGAAACTGATAGCCTCACCAAGGAGATAG AGCGAGGCACTCCGAGAGCACAGTGTGTGTGATTACCTAAAGCACCTTGT AAAGAAAATTTGTGATTTTAGGggttcttctcttttcttaTTTTTCTTCG GAAATGATTGGCAAGCAATCAGTAAGTGCCGAGGGCGTCGTTACTTGAAA CGCGCCAAATAAATTCGGTATGCGTTGGCACACAATTTTCAcgcaccgcc ctccttctatTTCTCTGCATGCCGGTGAGGGCATTCCTTATTGAAGTATA GAATGATGACATAAAGTGCTGCCCATTCTTTGTGTGAAAGATTATTGCTT ATTGCCAATCAAGAAGTCTGCCTTTCTTTCGGCGCATGTCCTTGTCTGTT GGTTCAGCCAAGGTTCTTGTGCTTTTTATGCAGATGTGTATGCCTCTATG TTTACTAATCTGGCCTAAGCCCACCGTCTTACCACGCCTTTCACCATAGT CATAGCATGACCTGGTCGTTGGGCTCCTATTTCCTAATGTTTTGATCTGA CCGCAACGAAACATATCTGGAGTAATGTAATAAGTAATACACCG
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Coding sequence (CDS) from alignment at KK037250.1:404292..405685+

>rna8891 ID=rna8891|Name=rna8891|organism=Nannochloropsis gaditana|type=CDS|length=630bp|location=Sequence derived from alignment at KK037250.1:404292..405685+ (Nannochloropsis gaditana)
ATGGAAGCCGTACGATGGGCCTGTCGGGACGCCGAAGGCACCTACATTCC
GCTGCTGAGAGGTCTTCCCCACGACTTCTGCGCGCGAAaccaagaaggaa
aataTTGCTTGGAGGCATACATGCCCCTTCTGTCAGGGTGTCCCTCTTCA
GTAAACTgcactgcctccctttcccccctctgcgGGGCCCTCCAAGACAC
GGGCTGTTGCTTCCAGCATCTATTGCCCCGCCATCCACAAGCTGCCGACC
TCAGCTTCCATTGTCCTCGCTCCCAAGACACCCCCCCGGcctgtccccct
ccgccggACACGCTCTTTGGACCGGGCAGCCTGCCTCTCTCGGCCGAGCC
CGtcacctctctttcctcctgggGCCGCAGTCTCACGGCGAGCGAGATCG
TCCTTCTGGGTAGCCTgagcctcctctccctcctccttgtggcCGTTGTG
CCGAGATGGGCCCGCGCCCTGGCCTCGCGGGGTTCTCTTGGGGCGTGGTA
CCAACACCTACTGCGAACAATCTCCAGGAGACCCTCGGTTTCCTCCGTCG
GAGGGGATGGCGTGGCGGGTGAAACTGATAGCCTCACCAAGGAGATAGAG
CGAGGCACTCCGAGAGCACAGTGTGTGTGA
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Synonyms
Publications