rna8884, rna8884 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8884
Unique Name	rna8884
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1779
Alignment location	KK037250.1:388843..391029 -

Link to JBrowse

Properties


Property Name	Value
Product	aspartyl-trna cytoplasmic
Orig transcript id	gnl\|cribi\|Naga_100431g3.10744.mrna
Orig protein id	gnl\|cribi\|Naga_100431g3.10744
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:388843..391029 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100431g3	gene8613	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21818.1	cds8854	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8884	rna8884-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:388843..391029-
coding sequence from alignment at KK037250.1:388843..391029-

mRNA sequence

>rna8884 ID=rna8884|Name=rna8884|organism=Nannochloropsis gaditana|type=mRNA|length=1779bp
ATGTCCTTTCGCATAAGCAAGGCGAGAGTGACCTTTAGAGCGGTCAGAAA
TGCCAGTAAGGGTAGCGGCAGATTATACCGGTGCTTTCGCACAGTCTCTA
CCAGCACCAAGCGTGGTCCATCATTGAGCGACATTACACACCCCCATCCG
CGGGTAAATCGGCTACTCCGCGAATACTTGGCCAAAATGGAGCAAGAGAG
TGCAGATTTACCTAATTCCCTGCAGCAACCGGGGTACCAAGTGAAGCAAA
GCCTGCCGCGCAAAGACCGCATATTCGTCAATAACTCGATAAATCTGGGC
AAAGTCGACGTATTAGGTTTTGATTATGATTATACACTTGTGAGTTACAC
CCACAAAATGGAAGGGCTGATTTACAGCATGGCCAAGGACTACCTGATCG
AGCATTCGGGTTACCCGTCAGAAATGAAGACACGTCGAATGTACGATCCA
CGCTTTGCTGTTCGAGGGCTAGCGGTAGATGTAGACCGAGGATGGGTGCT
GAAGCTTAGCTACATACACCAAATAGCACTCCGGACAGTATTCTGTGGGC
GTCGGCGCCTGAGCAAAGAGGAAGTGGTGGCTGCGTACGGCGACGGTGCT
CATGTCTCTCCACAATACCGGAACAACCACATGAAACCGCTTCTGGATTT
GTTTGCCTTGTCGGAGGCTTGTCTAGTTGCGGATGTCCTGGATTACTTGA
ACGAGTTGAATATTCACCATGACCGGCAGGCAGTAGTGGAAGACGTCTTA
CAAGCAATCAGTCATGTCCACACAAGTGGAGAGATGCATAAGACCGTGGT
GCGAGACCCTCCCACCTACATGCTACCCTCTCCACACCTGCGCGAAACAT
TGATGCGTTTCCGCGATGTCGGGAAAAAGCTGTTTCTGTGCTCCAACTCC
AATTTTGAGTACGTTTCTGGCGGCCTGCAATTTTTGCTGGGGGCGGACTG
GCAGGAGTTCTTTGACGTGGTCATCGTCTCTGCGGGAAAGCCAGGGTTCT
ACACATCCAACCGACCCTTCCGTCAGGTAGACAAGCGTACGGGGAAGATT
CGTTGGACGGAAGTGACCACATTAGAGAAAGGGAAGGTCTATTCGCACGG
CTCCCTGGAAGGCCTGACCAAATTGACGGGCTGGCAGGGGCCGCGGGTCT
TGTACATCGGCGACCAGATCTGGGCGGACCTGGTGGGGGGTCGACGGAAT
CAGGGATGGCGCACTGGAGCCGTCATCCGAGAGTTGGAGTACGAGTTGGT
GGTGCAGCAGTCCAAAAAATACAGGCAGTACGCCCATCAAGCCGTCACGG
TCACGGAACTGCTGCGCCTGGTTCAGGAGGAAATGGAGAAGATCCGGACC
GAGGCGGACGTGCGAGTCTCGGACGGCCTGGAGGAGTATCTGCGGTACTT
ACAGACGGAGATGTCCAAGATGTTCAACGCAAACTTCGGCTCTGTCTTTC
GTTCGGGGGGGGAGCCCACGCTCTTTGCATTCTCATTGCGACGGTATGCG
GACCTGTACCTGAGTAAGCTGGAGAACTTCCGTTTCTACTCTCCCATGCA
CCGCTTTTATCCGCAACGGGGCATCTCCATGCCGCACGACCCTTACATCC
CGGCGATCGGGCGCCCCCCTCCCGCGACGGGCGACGAAAAAGCAAGCGGG
GGCCAGGAATGGGCGAGCGTGGGCATAAATGCCGTGCCTGAAGACAAGAC
ATCGAGGAAGGAAGGCCGTGCGGGGGTATCGTCAGTGTCGTGTATGGCTG
GTGGAACTAGACGGCGCCAGGATTCCTAG

protein sequence of rna8884

>rna8884-protein ID=rna8884-protein|Name=rna8884|organism=Nannochloropsis gaditana|type=polypeptide|length=601bp
MVSSPDRGPAKRLFFSSGLLLFLTTTVLRKTGMRSASAILRRGAFNCISP
FNSAAFIRPVSVPGRVHRNFIGGNPHKSTSSPGQRTNPLRSTSPATAAYP
EISYAQSDQPTEGDDPVPAVANYTRLMSQSELHRDFHELGKLSAADAGKV
VWVRARIANVRAKGNSCFLVLRQGPFETVQACYFKDKSAPERSEAMLKFM
GGLTCESVVDVQGSLQAAQVKSCSVTDVELSIQRVYVVSSAEAILPFQLE
DAGRPEAEVEASQSTDRPFPRIGQELRLDNRWLDLRVPANNCIMRIQSGV
CQLFRESLYAEGFVEIHTPKLIGGESEGGAGVFKTDYFGRPACLAQSPQL
YKQMAVSADLGRVFEIGPVFRAENSNTRRHLCEFTGLDLEMTLDEHYNEV
LAIAHRMFKHIFEGLETRFAKELAIIREQYASDPVAFTDGPCIVHWPEAI
RMLREEGGMPEVGELEDLTGAQELRLGELVKKRHGADFFILDKYPSAVRP
FYTMPCPSDAAYSNSYDMFLRGQEICSGAQRIHDPDLLTRTIAAKGLPME
PLESYVNAFRHGVPPHGGAGIGLERVVFLYLGLDNVRKASMFPRDPNRCE
P

mRNA from alignment at KK037250.1:388843..391029-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8884 ID=rna8884|Name=rna8884|organism=Nannochloropsis gaditana|type=mRNA|length=2187bp|location=Sequence derived from alignment at KK037250.1:388843..391029- (Nannochloropsis gaditana)
ACGTATGATGCTTCAATATGTCACGGAGCAATTTCAACCTTTTCTCAACA
ACGCTAGATACTTGCAAGTTGTAGTTAGTACTTTGCCTGGAGTAGGATTT
GGTGTCCGTACGTGGCGGGGTTGAACATGCGCGCTGAACTAGTTCCCAGC
GCTTTTATCACCTCAGTATTTTTATTAAGATATTAACCCCATTAAATCAT
CTCTTCACAGGCCATTCCTGACACTCGTCTATCCTGCGCCTCTTCCCCTG
TTGCATGGGATTATCGCGCGTGCGTTGCTGATGGTCTCTAGCCCTGACCG
CGGCCCCGCAAAGCGCCTCTTTTTCTCGTCAGGCCTCCTTCTCTTCCTCA
CCACCACAGTGCTGAGAAAGACAGGCATGCGAAGTGCATCAGCTATACTG
AGGAGAGGAGCTTTCAATTGTATAAGTCCATTCAACAGCGCTGCCTTCAT
CAGACCCGTGAGTGTACCGGGAAGAGTACATCGAAATTTCATTGGTGGGA
ATCCTCACAAGAGCACTTCAAGTCCTGGCCAACGTACTAACCCTCTTCGA
AGTACAAGCCCAGCAACCGCAGCATATCCAGAAATATCTTATGCCCAATC
CGATCAACCTACGGAGGGAGACGATCCCGTACCCGCGGTGGCTAATTACA
CGCGCCTCATGTCCCAGTCGGAACTGCATCGGGATTTCCACGAGCTGGGA
AAGCTGAGTGCCGCGGACGCTGGCAAGGTGGTGTGGGTCCGGGCCCGTAT
TGCTAACGTCCGCGCAAAGGGCAATTCGTGTTTCCTTGTCCTCCGTCAAG
GGCCTTTCGAGACGGTGCAGGCGTGTTATTTCAAGGACAAAAGCGCACCA
GAGCGATCCGAGGCCATGCTGAAATTTATGGGCGGGCTCACTTGTGAGAG
CGTCGTGGACGTGCAAGGCTCCTTACAAGCTGCGCAAGTGAAATCGTGCT
CGGTCACAGACGTGGAGTTGTCAATCCAACGGGTCTACGTAGTCTCATCC
GCCGAGGCGATCCTACCGTTTCAATTGGAAGATGCGGGCCGGCCCGAGGC
TGAGGTGGAAGCGTCGCAAAGCACCGACCGACCGTTTCCTCGCATCGGTC
AGGAGCTTCGCCTGGATAACCGGTGGCTGGATCTGCGCGTTCCTGCCAAC
AACTGCATCATGCGCATTCAATCGGGCGTTTGTCAGCTTTTTCGGGAAAG
TCTTTATGCGGAAGGATTTGTGGAGATCCACACGCCCAAATTGATCGGAG
GGGAGAGCGAGGGCGGAGCCGGCGTGTTTAAGACCGACTATTTTGGTCGA
CCCGCGTGCCTGGCCCAATCTCCTCAGCTGTACAAGCAGATGGCGGTGTC
GGCGGATCTAGGCAGGGTCTTCGAGATCGGCCCCGTCTTCCGCGCCGAGA
ACAGCAACACGCGCCGACACCTGTGCGAATTTACGGGGCTGGACCTGGAA
ATGACGCTGGATGAGCATTACAACGAGGTCCTCGCCATCGCACACCGCAT
GTTTAAACACATCTTCGAGGGTTTGGAGACGCGGTTTGCCAAGGAGCTGG
CAATCATCCGAGAGCAATATGCCTCAGACCCGGTCGCCTTCACGGACGGG
CCTTGCATCGTGCACTGGCCGGAAGCCATCCGGATGCTGCGGGAGGAGGG
AGGAATGCCCGAGGTGGGCGAGCTGGAAGACTTGACCGGGGCCCAGGAGC
TGCGACTCGGGGAGCTCGTCAAAAAAAGGCACGGGGCAGACTTTTTCATC
CTCGACAAGTATCCATCGGCTGTCCGTCCCTTCTACACGATGCCTTGCCC
GTCCGACGCCGCCTACAGCAACTCGTACGACATGTTTCTGCGTGGCCAGG
AGATCTGTTCGGGCGCTCAACGTATCCATGATCCGGACTTGCTGACTCGG
ACAATAGCGGCCAAGGGCTTGCCGATGGAGCCGTTAGAGTCTTACGTGAA
TGCCTTTCGGCATGGTGTGCCGCCGCATGGGGGGGCGGGCATTGGATTGG
AGCGGGTAGTATTTTTGTATCTTGGGTTGGATAATGTGCGTAAGGCTTCC
ATGTTTCCGCGCGATCCGAACCGGTGCGAGCCTTGAGAAAGGAGGATACA
AAAGCACGCTCTTGTGATAACGGTCTGTTCGCTCTCAGATAACTGAGCAA
GAACTCCAAAGAAGCGAATAAAACAGTTGAAATTTCG

Coding sequence (CDS) from alignment at KK037250.1:388843..391029-

>rna8884 ID=rna8884|Name=rna8884|organism=Nannochloropsis gaditana|type=CDS|length=1806bp|location=Sequence derived from alignment at KK037250.1:388843..391029- (Nannochloropsis gaditana)
ATGGTCTCTAGCCCTGACCGCGGCCCCGCAAAGCGCCTCTTTTTCTCGTC
AGGCCTCCTTCTCTTCCTCACCACCACAGTGCTGAGAAAGACAGGCATGC
GAAGTGCATCAGCTATACTGAGGAGAGGAGCTTTCAATTGTATAAGTCCA
TTCAACAGCGCTGCCTTCATCAGACCCGTGAGTGTACCGGGAAGAGTACA
TCGAAATTTCATTGGTGGGAATCCTCACAAGAGCACTTCAAGTCCTGGCC
AACGTACTAACCCTCTTCGAAGTACAAGCCCAGCAACCGCAGCATATCCA
GAAATATCTTATGCCCAATCCGATCAACCTACGGAGGGAGACGATCCCGT
ACCCGCGGTGGCTAATTACACGCGCCTCATGTCCCAGTCGGAACTGCATC
GGGATTTCCACGAGCTGGGAAAGCTGAGTGCCGCGGACGCTGGCAAGGTG
GTGTGGGTCCGGGCCCGTATTGCTAACGTCCGCGCAAAGGGCAATTCGTG
TTTCCTTGTCCTCCGTCAAGGGCCTTTCGAGACGGTGCAGGCGTGTTATT
TCAAGGACAAAAGCGCACCAGAGCGATCCGAGGCCATGCTGAAATTTATG
GGCGGGCTCACTTGTGAGAGCGTCGTGGACGTGCAAGGCTCCTTACAAGC
TGCGCAAGTGAAATCGTGCTCGGTCACAGACGTGGAGTTGTCAATCCAAC
GGGTCTACGTAGTCTCATCCGCCGAGGCGATCCTACCGTTTCAATTGGAA
GATGCGGGCCGGCCCGAGGCTGAGGTGGAAGCGTCGCAAAGCACCGACCG
ACCGTTTCCTCGCATCGGTCAGGAGCTTCGCCTGGATAACCGGTGGCTGG
ATCTGCGCGTTCCTGCCAACAACTGCATCATGCGCATTCAATCGGGCGTT
TGTCAGCTTTTTCGGGAAAGTCTTTATGCGGAAGGATTTGTGGAGATCCA
CACGCCCAAATTGATCGGAGGGGAGAGCGAGGGCGGAGCCGGCGTGTTTA
AGACCGACTATTTTGGTCGACCCGCGTGCCTGGCCCAATCTCCTCAGCTG
TACAAGCAGATGGCGGTGTCGGCGGATCTAGGCAGGGTCTTCGAGATCGG
CCCCGTCTTCCGCGCCGAGAACAGCAACACGCGCCGACACCTGTGCGAAT
TTACGGGGCTGGACCTGGAAATGACGCTGGATGAGCATTACAACGAGGTC
CTCGCCATCGCACACCGCATGTTTAAACACATCTTCGAGGGTTTGGAGAC
GCGGTTTGCCAAGGAGCTGGCAATCATCCGAGAGCAATATGCCTCAGACC
CGGTCGCCTTCACGGACGGGCCTTGCATCGTGCACTGGCCGGAAGCCATC
CGGATGCTGCGGGAGGAGGGAGGAATGCCCGAGGTGGGCGAGCTGGAAGA
CTTGACCGGGGCCCAGGAGCTGCGACTCGGGGAGCTCGTCAAAAAAAGGC
ACGGGGCAGACTTTTTCATCCTCGACAAGTATCCATCGGCTGTCCGTCCC
TTCTACACGATGCCTTGCCCGTCCGACGCCGCCTACAGCAACTCGTACGA
CATGTTTCTGCGTGGCCAGGAGATCTGTTCGGGCGCTCAACGTATCCATG
ATCCGGACTTGCTGACTCGGACAATAGCGGCCAAGGGCTTGCCGATGGAG
CCGTTAGAGTCTTACGTGAATGCCTTTCGGCATGGTGTGCCGCCGCATGG
GGGGGCGGGCATTGGATTGGAGCGGGTAGTATTTTTGTATCTTGGGTTGG
ATAATGTGCGTAAGGCTTCCATGTTTCCGCGCGATCCGAACCGGTGCGAG
CCTTGA

Synonyms

Publications