rna8880, rna8880 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8880
Unique Name	rna8880
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2774
Alignment location	KK037250.1:377805..380578 +

Link to JBrowse

Properties


Property Name	Value
Product	UDP-glucuronosyl/UDP-glucosyltransferase
Orig transcript id	gnl\|cribi\|Naga_100051g35.8876.mrna
Orig protein id	gnl\|cribi\|Naga_100051g35.8876
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:377805..380578 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100051g35	gene8609	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8880	rna8880-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21837.1	cds8850	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:377805..380578+
coding sequence from alignment at KK037250.1:377805..380578+

mRNA sequence

>rna8880 ID=rna8880|Name=rna8880|organism=Nannochloropsis gaditana|type=mRNA|length=2774bp
GTAGCATGCGCCGTTGTTTGTCATGGTATCAAGATTAACAACAGACGGTC
GCCACTGAGTTGCTCTGCTAAATGCCATGGCCCTTGCATGCATCCAACGA
CGTACAGTAATTATTGTGTTCGCTTTTGGTACACGGGGTGACGTGCAACC
AGTTGCATTATTAGCAGAATCCTTGTCCAGTGTTTATGATGATGTATTTT
TCGTCTCTCATGGCCAGCTGGAAAAGACATTAAAAGAGCTCTGGGGAAGC
ACCGCGTGCATCAAATTTATCGCAAGCCCCAGTCCTCCACATGCTGCAGA
CGCAGGATTCGGTCCAGAAGTAGATATAGCAGCCATATTACGTCCAAGAA
ATCACTTACAGGTGTGTATAGATGCGGTGAAGCAAGCTCTTGTTGGATCG
CCTCTATCCCCAAAGCATCCCCCGTCGGTCCTTCTCATCTGCAACCTCTT
CGCTCTTGAAGCCGTTCACCTTGCCGAGGCCTGGAGCCTTCCACTTATCA
TTGTACACCCGTATACTGCACCATCAACGCTGTCACGCAACTTTAATGTT
CTCTTTCGTCGGACAGATCCTTTGCAGTATAACATTTTGAAAAAGGAAAG
CTGGAGCACGGAGGACAGTGAACGCTCAACGAGTCATACGCAAATAAAAT
GGGTAGATATAGAGCATTACTTGTGGCCTATTTTTTTTGATTCTTGGAAG
CCCTTTCGGCGCATGCTCTTCGGAGTTGAGAACGACAAAATTGATGGCAT
AAATCTGCCGTGGCTGGCCGGCCGCCCATCAATTCCGCTGCTGTATTTGT
ACAGCGAGAGCATTCTCCCCCGACCGCACCATTTTCCACATGCCGTACAC
GTCGTAGGCTTCATTTTTGAGGAGAAGAATGCCGGGTCTTTCAAGCCTCC
ACCTATTTTGACGGCTTTCCTCTCAGGGGCAACAGGGCGAGCAGTAGAAA
AACGCGAGTCTCCCTGCGTTCCTTCCCAGGAGACTACGGGGCGCCTCGTG
CCGGACATCACCAAGAAAGTCGAAAATGCTTCAAGCCAAGTGGGTCAAAA
AGAGTTTTGTCCTGAAGTGGGTCCTGTCTATGTGAGCTTTGGGACCATGG
TCTCGCTCGGCGCCTTGGGTGACCTGGATCGCGCCGCCCGCGCTCTTATC
CAGGCTCTTCTATCGCCCTCTCTGTCATCCGAGGTACCCTCTACTTCTAT
CCCGATCCGGTGTGTGGTCGATGCTGCTCATTCCCCACGATGGGTGAAGG
CCTTGCAGCTGGCCGTGGCGACATGCCAAGTCAGGGAACGAGTCCTCATT
CTCGAAGAGTCAGTGCCTCATTCGTGGCTTCTACCGCAGTGCAGTGCAAT
CGTGCATCACGGGGGAAGCGGCACAACTGCCGCCGCCTTGCGAGCGGGTA
TTGCACAGGTTGTGGTACCGGGCATGATGGATCAGTTCCTCTGGGCGGAG
CGAGTGGCCTCGCTGGGCTTGGGGCCTTCCCCCCCGGGCATTGCGGAGGT
GTTCCCGGAGGGCCCGGCCGAGAACACCGGTGGGGCAACCCCTTGCCAAG
TTCTCTCGGTCGCAATAGCGCAAGCGATGCATCCTTTTGTCCGGCTACGG
GCTGCAGCAATGGGCCGTCGCCTCCGGGCCGAGCCCTCAGGATTGCAACG
GTGTGCGACACTCATTGCTCATTACCTTGAGGAGTGGCAAAGGCTTCCTC
TCCCGCCACCCGTTCGACCTCCCCTACCTTTCTCCTTGCCGTTGGGCTGC
GAGCTCGTTGATTTAGAGGTGCTTGACGACATGGGAAGCAGCGCTCACTG
CGATGTAGGGGGCCAGTGCGATGCTTCCCGTGCGACGTTCTCGGCCCTGA
CCGTGGCCGTCTTGGAAGGGAGTGAATCGGAGGTGGCCTTCATTCACCAA
GAGATTTTCCCCCCCGGTGTGCAGACGCATGGGTGGGGTTATCTTAGACA
CGGGGTACATGTAAAGGCAGATGACATTGTTTTGGATGTGGGCGCCAATA
TCGGACTTTTTGCGTTGTATCTCGATCTTCACGTCATGGACCAGCCCGAG
CGTGTCTCCATTCTGGCAGTGGAACCCGGCCCCCGCACGTTCCAAGCCCT
TCAATACAATTTGGCAGCTTATGGGGTCAAGCAAATAGCGTGTCTGCAAC
AAGCTGTTGGCGCCGAGGTAAATCGTGTCGAGGGGATGGGGGATGCGGCG
GACGAGGAGGCGAAACCCGAAGGAGGACACCACCTCCTACGCTTTTATCC
ACACGCTCCAGGTAATAGCACTCTCTTGACTCAGGGACTGAGCCATCTGC
AGGGTAAGAGTGCCTTCAAAGGGGTCAATGCCAAGCTGCGTGCCCACTTG
ACAGAAGGGGCAGAGGACTTTCCTGTGAGAGTCACGACTGTCTCGGCCCT
GGTGCGAGACTACGCCCTCCCTCGCGTCAATTTGCTCAAAATCGACGTTG
AAGGGCATGAGGAGGCTGTGCTTCACGGCATCGACGGGAAAACCTGGGAT
GTCATCGAGCAAGTCGCCATGGAGGTGCACGATGTGGATGGCCGCCTGGC
CCGCATCGAGTGCCTTCTGCGCCGGCAGGGTTTCGGGTCGGTCGTCTCAG
AGACACCTGTCTGGGCACAGGGTGGATGTGATGGGGAAACTCTGGACAAC
CGAATGGTATACGCACATCGAAACAGGCATCCCTCATGAAGCAAAAGACA
TCTGTCAATAGAACTGAAGATCTTCTGACGGAAGCGAAGCGAATACGATA
AAAATAAGCACGTCCGTATCGAAT

protein sequence of rna8880

>rna8880-protein ID=rna8880-protein|Name=rna8880|organism=Nannochloropsis gaditana|type=polypeptide|length=658bp
MLFGVENDKIDGINLPWLAGRPSIPLLYLYSESILPRPHHFPHAVHVVGF
IFEEKNAGSFKPPPILTAFLSGATGRAVEKRESPCVPSQETTGRLVPDIT
KKVENASSQVGQKEFCPEVGPVYVSFGTMVSLGALGDLDRAARALIQALL
SPSLSSEVPSTSIPIRCVVDAAHSPRWVKALQLAVATCQVRERVLILEES
VPHSWLLPQCSAIVHHGGSGTTAAALRAGIAQVVVPGMMDQFLWAERVAS
LGLGPSPPGIAEVFPEGPAENTGGATPCQVLSVAIAQAMHPFVRLRAAAM
GRRLRAEPSGLQRCATLIAHYLEEWQRLPLPPPVRPPLPFSLPLGCELVD
LEVLDDMGSSAHCDVGGQCDASRATFSALTVAVLEGSESEVAFIHQEIFP
PGVQTHGWGYLRHGVHVKADDIVLDVGANIGLFALYLDLHVMDQPERVSI
LAVEPGPRTFQALQYNLAAYGVKQIACLQQAVGAEVNRVEGMGDAADEEA
KPEGGHHLLRFYPHAPGNSTLLTQGLSHLQGKSAFKGVNAKLRAHLTEGA
EDFPVRVTTVSALVRDYALPRVNLLKIDVEGHEEAVLHGIDGKTWDVIEQ
VAMEVHDVDGRLARIECLLRRQGFGSVVSETPVWAQGGCDGETLDNRMVY
AHRNRHPS

mRNA from alignment at KK037250.1:377805..380578+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8880 ID=rna8880|Name=rna8880|organism=Nannochloropsis gaditana|type=mRNA|length=2774bp|location=Sequence derived from alignment at KK037250.1:377805..380578+ (Nannochloropsis gaditana)
GTAGCATGCGCCGTTGTTTGTCATGGTATCAAGATTAACAACAGACGGTC
GCCACTGAGTTGCTCTGCTAAATGCCATGGCCCTTGCATGCATCCAACGA
CGTACAGTAATTATTGTGTTCGCTTTTGGTACACGGGGTGACGTGCAACC
AGTTGCATTATTAGCAGAATCCTTGTCCAGTGTTTATGATGATGTATTTT
TCGTCTCTCATGGCCAGCTGGAAAAGACATTAAAAGAGCTCTGGGGAAGC
ACCGCGTGCATCAAATTTATCGCAAGCCCCAGTCCTCCACATGCTGCAGA
CGCAGGATTCGGTCCAGAAGTAGATATAGCAGCCATATTACGTCCAAGAA
ATCACTTACAGGTGTGTATAGATGCGGTGAAGCAAGCTCTTGTTGGATCG
CCTCTATCCCCAAAGCATCCCCCGTCGGTCCTTCTCATCTGCAACCTCTT
CGCTCTTGAAGCCGTTCACCTTGCCGAGGCCTGGAGCCTTCCACTTATCA
TTGTACACCCGTATACTGCACCATCAACGCTGTCACGCAACTTTAATGTT
CTCTTTCGTCGGACAGATCCTTTGCAGTATAACattttgaaaaaggaaag
ctgGAGCACGGAGGACAGTGAACGCTCAACGAGTCATACGCAAATAAAAT
GGGTAGATATAGAGCATTACTTGTGGCCTATTTTTTTTGATTCTTGGAAG
CCCTTTCGGCGCATGCTCTTCGGAGTTGAGAACGACAAAATTGATGGCAT
AAATCTGCCGTGGCTGGCCGGCCGCCCATCAATTCCGCTGCTGTATTTGT
ACAGCGAGAGCATTCTCCCCCGACCGCACCATTTTCCACATGCCGTACAC
GTCGTAGGCTTCATTTTTGAGGAGAAGAATGCCGGGTCTTTCAAGCCTCC
ACCTATTTTGACGGCTTTCCTCTCAGGGGCAACAGGGCGAGCAGTAGAAA
AACGCGAGTCTCCCTGCGTTCCTTCCCAGGAGACTACGGGGCGCCTCGTG
CCGGACATCACCAAGAAAGTCGAAAATGCTTCAAGCCAAGTGGGTCAAAA
AGAGTTTTGTCCTGAAGTGGGTCCTGTCTATGTGAGCTTTGGGACCATGG
TCTCGCTCGGCGCCTTGGGTGACCTGGATCGCGCCGCCCGCGCTCTTATC
CAGGCTCTTCTATCGCCCTCTCTGTCATCCGAGGTACCCTCTACTTCTAT
CCCGATCCGGTGTGTGGTCGATGCTGCTCATTCCCCACGATGGGTGAAGG
CCTTGCAGCTGGCCGTGGCGACATGCCAAGTCAGGGAACGAGTCCTCATT
CTCGAAGAGTCAGTGCCTCATTCGTGGCTTCTACCGCAGTGCAGTGCAAT
CGTGCATCACGGGGGAAGCGGCACAactgccgccgccttgcgAGCGGGTA
TTGCACAGGTTGTGGTACCGGGCATGATGGATCAGTTCCTCTGGGCGGAG
CGAGTGGCCTCGCTGGGCTTggggccttcccccccgggcatTGCGGAGGT
GTTCCCGGAGGGCCCGGCCGAGAACACCGGTGGGGCAACCCCTTGCCAAG
TTCTCTCGGTCGCAATAGCGCAAGCGATGCATCCTTTTGTCCGGCTACGG
GCTGCAGCAATGGGCCGTCGCCTCCGGGCCGAGCCCTCAGGATTGCAACG
GTGTGCGACACTCATTGCTCATTACCTTGAGGAGTGGCAAaggcttcctc
tcccgccacccGTTCGACCTCCCCTAcctttctccttgccgtTGGGCTGC
GAGCTCGTTGATTTAGAGGTGCTTGACGACATGGGAAGCAGCGCTCACTG
CGATGTAGGGGGCCAGTGCGATGCTTCCCGTGCGACGTTCTCGGCCCTGA
CCGTGGCCGTCTTGGAAGGGAGTGAATCGGAGGTGGCCTTCATTCACCAA
GAGATTTTCCCCCCCGGTGTGCAGACGCATGGGTGGGGTTATCTTAGACA
CGGGGTACATGTAAAGGCAGATGACATTGTTTTGGATGTGGGCGCCAATA
TCGGACTTTTTGCGTTGTATCTCGATCTTCACGTCATGGACCAGCCCGAG
CGTGTCTCCATTCTGGCAGTGGAACCCGGCCCCCGCACGTTCCAAGCCCT
TCAATACAATTTGGCAGCTTATGGGGTCAAGCAAATAGCGTGTCTGCAAC
AAGCTGTTGGCGCCGAGGTAAATCGTGtcgaggggatgggggatgcggcg
gacgaggaggcgaaacCCGAAGGAGGACACCACCTCCTACGCTTTTATCC
ACACGCTCCAGGTAATAGCACTCTCTTGACTCAGGGACTGAGCCATCTGC
AGGGTAAGAGTGCCTTCAAAGGGGTCAATGCCAAGCTGCGTGCCCACTTG
acagaaggggcagaggactTTCCTGTGAGAGTCACGACTGTCTCGGCCCT
GGTGCGAGActacgccctccctcgcgtcaATTTGCTCAAAATCGACGTTG
AAGGGCATGAGGAGGCTGTGCTTCACGGCATCGACGGGAAAACCTGGGAT
GTCATCGAGCAAGTCGCCATGGAGGTGCACGATGTGGATGGCCGCCTGGC
CCGCATCGAGTGCCTTCTGCGCCGGCAGGGTTTCGGGTCGGTCGTCTCAG
AGACACCTGTCTGGGCACAGGGTGGATGTGATGGGGAAACTCTGGACAAC
CGAATGGTATACGCACATCGAAACAGGCATCCCTCATGAAGCAAAAGACA
TCTGTCAATAGAACTGAAGATCTTCTGACGGAAGCGAAGCGAATACGATA
AAAATAAGCACGTCCGTATCGAAT

Coding sequence (CDS) from alignment at KK037250.1:377805..380578+

>rna8880 ID=rna8880|Name=rna8880|organism=Nannochloropsis gaditana|type=CDS|length=1977bp|location=Sequence derived from alignment at KK037250.1:377805..380578+ (Nannochloropsis gaditana)
ATGCTCTTCGGAGTTGAGAACGACAAAATTGATGGCATAAATCTGCCGTG
GCTGGCCGGCCGCCCATCAATTCCGCTGCTGTATTTGTACAGCGAGAGCA
TTCTCCCCCGACCGCACCATTTTCCACATGCCGTACACGTCGTAGGCTTC
ATTTTTGAGGAGAAGAATGCCGGGTCTTTCAAGCCTCCACCTATTTTGAC
GGCTTTCCTCTCAGGGGCAACAGGGCGAGCAGTAGAAAAACGCGAGTCTC
CCTGCGTTCCTTCCCAGGAGACTACGGGGCGCCTCGTGCCGGACATCACC
AAGAAAGTCGAAAATGCTTCAAGCCAAGTGGGTCAAAAAGAGTTTTGTCC
TGAAGTGGGTCCTGTCTATGTGAGCTTTGGGACCATGGTCTCGCTCGGCG
CCTTGGGTGACCTGGATCGCGCCGCCCGCGCTCTTATCCAGGCTCTTCTA
TCGCCCTCTCTGTCATCCGAGGTACCCTCTACTTCTATCCCGATCCGGTG
TGTGGTCGATGCTGCTCATTCCCCACGATGGGTGAAGGCCTTGCAGCTGG
CCGTGGCGACATGCCAAGTCAGGGAACGAGTCCTCATTCTCGAAGAGTCA
GTGCCTCATTCGTGGCTTCTACCGCAGTGCAGTGCAATCGTGCATCACGG
GGGAAGCGGCACAactgccgccgccttgcgAGCGGGTATTGCACAGGTTG
TGGTACCGGGCATGATGGATCAGTTCCTCTGGGCGGAGCGAGTGGCCTCG
CTGGGCTTggggccttcccccccgggcatTGCGGAGGTGTTCCCGGAGGG
CCCGGCCGAGAACACCGGTGGGGCAACCCCTTGCCAAGTTCTCTCGGTCG
CAATAGCGCAAGCGATGCATCCTTTTGTCCGGCTACGGGCTGCAGCAATG
GGCCGTCGCCTCCGGGCCGAGCCCTCAGGATTGCAACGGTGTGCGACACT
CATTGCTCATTACCTTGAGGAGTGGCAAaggcttcctctcccgccacccG
TTCGACCTCCCCTAcctttctccttgccgtTGGGCTGCGAGCTCGTTGAT
TTAGAGGTGCTTGACGACATGGGAAGCAGCGCTCACTGCGATGTAGGGGG
CCAGTGCGATGCTTCCCGTGCGACGTTCTCGGCCCTGACCGTGGCCGTCT
TGGAAGGGAGTGAATCGGAGGTGGCCTTCATTCACCAAGAGATTTTCCCC
CCCGGTGTGCAGACGCATGGGTGGGGTTATCTTAGACACGGGGTACATGT
AAAGGCAGATGACATTGTTTTGGATGTGGGCGCCAATATCGGACTTTTTG
CGTTGTATCTCGATCTTCACGTCATGGACCAGCCCGAGCGTGTCTCCATT
CTGGCAGTGGAACCCGGCCCCCGCACGTTCCAAGCCCTTCAATACAATTT
GGCAGCTTATGGGGTCAAGCAAATAGCGTGTCTGCAACAAGCTGTTGGCG
CCGAGGTAAATCGTGtcgaggggatgggggatgcggcggacgaggaggcg
aaacCCGAAGGAGGACACCACCTCCTACGCTTTTATCCACACGCTCCAGG
TAATAGCACTCTCTTGACTCAGGGACTGAGCCATCTGCAGGGTAAGAGTG
CCTTCAAAGGGGTCAATGCCAAGCTGCGTGCCCACTTGacagaaggggca
gaggactTTCCTGTGAGAGTCACGACTGTCTCGGCCCTGGTGCGAGActa
cgccctccctcgcgtcaATTTGCTCAAAATCGACGTTGAAGGGCATGAGG
AGGCTGTGCTTCACGGCATCGACGGGAAAACCTGGGATGTCATCGAGCAA
GTCGCCATGGAGGTGCACGATGTGGATGGCCGCCTGGCCCGCATCGAGTG
CCTTCTGCGCCGGCAGGGTTTCGGGTCGGTCGTCTCAGAGACACCTGTCT
GGGCACAGGGTGGATGTGATGGGGAAACTCTGGACAACCGAATGGTATAC
GCACATCGAAACAGGCATCCCTCATGA

Synonyms

Publications