rna8861, rna8861 (mRNA) Nannochloropsis gaditana

Overview
Namerna8861
Unique Namerna8861
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1999
Alignment locationKK037250.1:333060..333872 +

Link to JBrowse

Properties
Property NameValue
Productinosine triphosphate pyrophosphatase
Orig transcript idgnl|cribi|Naga_100051g15.8875.mrna
Orig protein idgnl|cribi|Naga_100051g15.8875
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:333060..333872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100051g15gene8591Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8861rna8861-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21836.1cds8831Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8861 ID=rna8861|Name=rna8861|organism=Nannochloropsis gaditana|type=mRNA|length=1999bp
CAGGAAGCGAGAATTTCATCTTTTTTACGTTCGCTCCGTGTCTCAAGCTT
TTCGTTATATCTATACTATCGCTACGTGACGGTAGGTACGACGTGGCCCT
GAAAGAGATTAAAGTGAAAGAATGAGAGGGATCTTGCCTGGCACAAAAGG
AGGAGCGCACCAGCAGCACCCAGAGTCGAACATTTTTTGGTCGAGACGGA
CCATGACGCCATCGTCAGAGAGGAATTATCGGTACAAATATGCACAAGTC
CTGGCTTTGGTGTTGTCAGCGTGGGCAGTGCAAATGGCTTCAGCGGCTGG
GCCCTTGGAAGTGATAGACGCTGCAGGCAAGCTCAAAGCAAAGGAGGAAG
TAAACCGATTCGTGCAAAAGCGACTGAAAGCCACCGAGCGCGCGGGCCTA
GTGATTGTTGGCAGCGCGGGCAGTAAGGGATCTGGAAAGAGCACCTTGCT
GAACAAACTGTTCGATACGGATTTTGGCATCGGACGAGCTCTTGGTCCAC
ACGCCAGGCCACAAGGAGGCGTAGCACTGTGTGCTGCAGGAGGTGGTGGA
CTTGTATGCGTGGATTACGACGCAGTGGGCACGGGCACGGAAGAAGCCGG
CACCAATGGGAAATTCCTGGCCTTGACCACCAAGCTAGCAGACGCGATTC
TGCTCAACCTGTGGAGCTCGGACGTGGGTCGGAATGTGCCGTACAATAGC
TTGGCTCTGCAGGCGATTTTTCAAGAGCAGCTGCACGCAGAAGGCTCCCC
AAAGACTCTCCTCCTTGTCGTTGTACACGACCACCCGGAAGAAGAGGCGG
GCGACCGGACCAAGGAGGCGGTCCTCGAGGTCCTGGAGACGGTATGGGCC
AGCCTGCCGAGGACTGAGGAGAAGGCCGACGCGGAGCTCACGGACTTCTT
CGACGTGGAGATGGCCTTCCTTCCCCACCCCCGATACCGGCCAGAAGAAT
ACGAAAGGGCCTTGGAGGGCTTGCGCAATCGATTTCTGGACCTGGACCTT
CTCTCTGCCCGGCACTCCAAACGTGTGGACCGAGAGACTTTCCCCGCTAC
CCTTGCAGCTTTTTGGAATGAGATCAAGGCCCGAGATTTCGTGGTTCTTC
CTTCACAAGGAGAGCTGTTAGCCACCCATCAGATTGAGCTTCAGCACGGA
AAGGCACTGGCAACGGTGGAGGGCAAGCTGGGCATGTGGAGGGCGACAAG
TGAGCGAGGTCGGGTGGTGGGGGGCTTTGGGGAGATCGCCGCCAAGCTTT
ACACGTCCGCGCTGGAGGAATTCGACCGGGCCACGCAGCCATTTGCCGCG
TCGCCATTGCGGGTGCGGAAGCACAAAGAATTGGAGGGGGTGTTGGCGCG
GGGAGTGAACGACCTCGTCCGAAAGCAGCTGGGAAATCTGCAGGCTCAGG
GGCTCAAGCGGTTCAAGGCAGCCCTGCTGCAGTTCGTGGGCAAGGAGGAT
CGAGAGGACCTCGAAAATGAGGCACAGAGGGGCATGGAGGAGTGGTTTGC
AGAGAACGCAGAGAAAGTGGTGGTCCCGGTCGTGGCCGGGGCGGGAAGCT
ACGAGAAGGCGCTTTCTGATTTTGTGAATCAACTTACGGACTACGCACAT
AAGTGGCCGCAATCTCCTGCATACAATGTGCAGGCAATGAAGAAGCTGGA
GACAGGCGCTAAGAAGAAGAAGGGCAAGGCCTCATGGGGGGCGACGTTTC
AGCTCGTCTCCTTGTTGCGAACTCCCGGCGACGGGGCCCTGCAAGGTTTT
GCGACTTATCAAGCGGGTCCGGTGCAGTTTTTGATGGGTCTCCAAAACGA
TCGGGACCTGCCTGAATCGCGTTTGGAAGGAAAGGCGCCTCCATTGCTGC
GCATTCAGCCGAAGGTGGCGTTCGACGTGGATTTGTAGGGCATGAGAGGT
TAGCGGTCGTGAGTCGTGAAGGACGTGAACGATGCGTGGAAGAGGGTATT
AAAAATGAAAGAGTGTCCTGAAAGAAATTAAGGATTTTATCACAATACT
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protein sequence of rna8861

>rna8861-protein ID=rna8861-protein|Name=rna8861|organism=Nannochloropsis gaditana|type=polypeptide|length=270bp
MHLVTSFLLLILGLSSAAGAFVPPVSTITLRSGRLLLSTSSPLRRVSRTI
RGFKMASSGNNGCPKPTLTFVTGNAKKLEEVRAILGADAKTGAVLPFDVV
SQKIDLPELQGEPEDVAREKCLLAVKEVKGPTMVEDTALCFNALGGLPGV
YIKWFLEKLGHEGLNNLLAAYEDKSAYALCTFAYCPGVGQEVLVFDGRTP
GKIVPARGPHAFGWDPVFEPADGQSGGSEPPKTYAEMDKDMKNSISHRYR
AVAKLRDFLLSPSGKMVVEE
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mRNA from alignment at KK037250.1:333060..333872+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8861 ID=rna8861|Name=rna8861|organism=Nannochloropsis gaditana|type=mRNA|length=813bp|location=Sequence derived from alignment at KK037250.1:333060..333872+ (Nannochloropsis gaditana)
ATGCACCTGGTAACATCCTTCCTGCTGCTGATTCTTGGGCTTTCCTCTGC CGCTGGTGCGTTCGTTCCTCCTGTGAGCACCATTACTTTGCGATCAGGTC GCCTCCTGCTCAGCACCTCATCACCCCTGCGCCGAGTGTCGAGGACGATT CGTGGTTTCAAAATGGCATCATCAGGCAACAACGGATGTCCCAAGCCTAC CTTGACCTTTGTCACAGGCAATGCCAAGAAGCTTGAAGAAGTCCGAGCAA TATTGGGGGCCGACGCGAAGACAGGTGCTGTGCTGCCTTTCGATGTCGTA AGTCAGAAAATAGACCTTCCTGAACTTCAGGGTGAGCCTGAGGACGTGGC AAGAGAAAAGTGCCTTCTGGCTGTCAAAGAGGTGAAGGGCCCTACAATGG TGGAGGACACCGCTTTGTGTTTCAATGCATTGGGCGGACTACCAGGAGTG TACATCAAGTGGTTTTTGGAAAAGCTGGGACATGAGGGCTTGAACAATCT GCTCGCAGCCTACGAGGACAAAAGTGCGTACGCCCTCTGCACTTTTGCTT ACTGCCCAGGGGTCGGACAAGAGGTGCTGGTGTTCGACGGGCGCACACCA GGCAAGATCGTCCCGGCGCGCGGCCCCCACGCTTTTGGTTGGGACCCTGT CTTCGAGCCTGCCGACGGACAGTCCGGCGGGTCCGAGCCTCCTAAGACGT ACGCAGAGATGGACAAGGATATGAAAAACAGCATTTCGCACAGGTACAGG GCGGTGGCGAAATTGCGGGATTTTCTCTTGTCACCGTCTGGaaagatggt ggtggaggagtga
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Coding sequence (CDS) from alignment at KK037250.1:333060..333872+

>rna8861 ID=rna8861|Name=rna8861|organism=Nannochloropsis gaditana|type=CDS|length=813bp|location=Sequence derived from alignment at KK037250.1:333060..333872+ (Nannochloropsis gaditana)
ATGCACCTGGTAACATCCTTCCTGCTGCTGATTCTTGGGCTTTCCTCTGC
CGCTGGTGCGTTCGTTCCTCCTGTGAGCACCATTACTTTGCGATCAGGTC
GCCTCCTGCTCAGCACCTCATCACCCCTGCGCCGAGTGTCGAGGACGATT
CGTGGTTTCAAAATGGCATCATCAGGCAACAACGGATGTCCCAAGCCTAC
CTTGACCTTTGTCACAGGCAATGCCAAGAAGCTTGAAGAAGTCCGAGCAA
TATTGGGGGCCGACGCGAAGACAGGTGCTGTGCTGCCTTTCGATGTCGTA
AGTCAGAAAATAGACCTTCCTGAACTTCAGGGTGAGCCTGAGGACGTGGC
AAGAGAAAAGTGCCTTCTGGCTGTCAAAGAGGTGAAGGGCCCTACAATGG
TGGAGGACACCGCTTTGTGTTTCAATGCATTGGGCGGACTACCAGGAGTG
TACATCAAGTGGTTTTTGGAAAAGCTGGGACATGAGGGCTTGAACAATCT
GCTCGCAGCCTACGAGGACAAAAGTGCGTACGCCCTCTGCACTTTTGCTT
ACTGCCCAGGGGTCGGACAAGAGGTGCTGGTGTTCGACGGGCGCACACCA
GGCAAGATCGTCCCGGCGCGCGGCCCCCACGCTTTTGGTTGGGACCCTGT
CTTCGAGCCTGCCGACGGACAGTCCGGCGGGTCCGAGCCTCCTAAGACGT
ACGCAGAGATGGACAAGGATATGAAAAACAGCATTTCGCACAGGTACAGG
GCGGTGGCGAAATTGCGGGATTTTCTCTTGTCACCGTCTGGaaagatggt
ggtggaggagtga
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Synonyms
Publications