rna8855, rna8855 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8855
Unique Name	rna8855
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	612
Alignment location	KK037250.1:315354..317984 -

Link to JBrowse

Properties


Property Name	Value
Product	xylulose kinase-like protein
Orig transcript id	gnl\|cribi\|Naga_100051g9.8891.mrna
Orig protein id	gnl\|cribi\|Naga_100051g9.8891
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:315354..317984 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100051g9	gene8585	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21852.1	cds8825	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8855	rna8855-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:315354..317984-
coding sequence from alignment at KK037250.1:315354..317984-

mRNA sequence

>rna8855 ID=rna8855|Name=rna8855|organism=Nannochloropsis gaditana|type=mRNA|length=612bp
ATGGACCTTGTTGGCTTGCGGAATGGAGGGGGGAGGCGACCTTCTACGCG
CCTGAATGAAGGGGATACCCAGTCCAGGCGTTCCGGGAGCGGGCGAGGGG
AAAGAAGTGACTTACAGCCTCGACTGGAGCCCTTAGTGATTTCGGAAAAA
CTCTCGTCTTCCTCCGCCGGGAATGGTTCTCAAAGCACCAGCACGGGTAG
CAAAGCCTCCCCAATGGATTGCACGATTTTGCCCTCTCTCAACACTAGTC
GAGGGAGTGTCAGTTTTCCTACTCCGGCGAGCAACAGCCAGGGAAACGGC
CTCTCACGCAGCCTGAGCAGCGCAAGCATCATGTCCTCGCCTTTGCCGCC
TCTCGTGCAGACCCCCCACAGTAATGGGGCCGTGTCCGCGTCCTTCTTCA
CGGAGGACGAGGAGGACTCCGAGGAGGAGACCAGTCCGCACGCTAAGGAA
GTCATGGTGGCACTGTCACGGTCCAAGACTAAAGACACGAATCTGCCGTT
GCTGGTTCCTTCTCTCGGAAAGGGCTCTCGAGGAGCAGATACTGACATCC
CCTCAAACCAGAAAACATCATCAGCACTATCAGCGGCGCTCCGAACCAGC
GAGTCGTCGTGA

protein sequence of rna8855

>rna8855-protein ID=rna8855-protein|Name=rna8855|organism=Nannochloropsis gaditana|type=polypeptide|length=561bp
MAAGRGLDEASSHANTGGASTALLLGIDLSTQSVTVVFLDAGTNRIVHID
TLNFDRELPQFGTSAGLHVGKNGKVTSPVQMWLVGLDRILRRQERTLMGR
VKAVSGSAQQHGSIFWTADGLAALRCMAPADSFSSNLYGGFALEDCPTWA
DSSTQMECDAIESATGGPGAMAALTGSRAYCRFTGPQIARVARTEPLVWK
HTARVSLVSSFLTSLLVGHPAPVDASDASGMNLMNVRTSEWCEELLEATA
PGLAARLGTIVNPWESLGPISPYCAARFGFVTDCLVIPASGDNSCSVVGT
GLACDQTASTLMVSLGTSDTLVGLTRSPRPGPEGHVMVSPRGPDEWFAML
CYKNGALAREAVRDRVAGGCWKKFDDLVASAPPGNDGNLAMTLVMEEIVP
VLPIRGSFRVDAQDEPVAALSEAHEARAVVEARFLSMRVHAGNLGLPTAP
SRIIATGGGSMSTSLTQVLADVFNAPVLVADSSEAAAVGAALRAGHGLKC
KKQARWVELLASPLKDFKVMATPNAQAAAAYPATLLKRFAAFERGLVAKA
QKHPQAQQSRE

mRNA from alignment at KK037250.1:315354..317984-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8855 ID=rna8855|Name=rna8855|organism=Nannochloropsis gaditana|type=mRNA|length=2631bp|location=Sequence derived from alignment at KK037250.1:315354..317984- (Nannochloropsis gaditana)
ACAACGACAAAAATTCACACTATGGATGATTTGCCAGTGCGTCGTCGTTT
TATTGTATCATTCTCATATGTACCACGCCTGTGGGGCATGGAAGCTGTCT
GCCTGTGTCTTTTTTTTTCGCTGGCCTATCGTCTGGGGCGTTGAGGGATG
CTACTAGTAGTACTACTTCAGGAACAGTATCACGGAGCTGCGGAGCTCAA
TCTAGGAGCATTCCGAGGAACGAGATTGAGAATTGACTCGACCCATCACA
ACCACCAATACAACCAGCATAGTTAGACAGAGCTCCCACACCTTTACGGC
CATGGCTGCGGGACGGGGCTTGGACGAGGCAAGCTCCCATGCTAACACCG
GCGGAGCATCGACTGCTCTCCTGTTAGGAATCGATCTGTCCACGCAATCC
GTCACAGTCGTATTTCTCGACGCGGGTACGAATCGCATCGTCCACATTGA
TACCCTCAATTTCGACCGAGAGTTGCCTCAATTTGGAACGTCCGCGGGAT
TGCACGTTGGTAAAAATGGCAAGGTGACCAGCCCTGTACAGATGTGGTTA
GTCGGTCTCGACAGGATCTTGCGACGTCAAGAACGGACTCTCATGGGTCG
TGTTAAAGCCGTGTCAGGCTCGGCACAGCAGCACGGAAGTATCTTTTGGA
CTGCAGACGGACTGGCAGCCTTGCGGTGCATGGCGCCGGCAGACAGCTTC
TCGTCCAATCTTTATGGCGGCTTTGCCCTGGAGGACTGCCCTACATGGGC
CGACTCCTCCACGCAAATGGAATGCGACGCCATCGAGTCCGCGACAGGTG
GTCCCGGGGCAATGGCGGCCTTGACTGGCTCGCGGGCTTACTGTCGCTTT
ACGGGCCCTCAGATCGCCCGCGTGGCCCGAACGGAGCCTCTCGTTTGGAA
ACACACGGCCCGCGTCTCTCTGGTCTCTTCCTTTTTGACTTCCTTGCTTG
TGGGACACCCTGCGCCTGTGGATGCGTCCGATGCATCTGGCATGAATCTG
ATGAACGTGCGGACCTCGGAGTGGTGCGAGGAGCTGCTGGAGGCCACAGC
TCCGGGGCTGGCGGCCCGGCTTGGGACCATTGTCAACCCCTGGGAGAGCC
TGGGGCCCATCTCTCCGTACTGTGCGGCCCGCTTTGGCTTTGTCACGGAT
TGTTTGGTCATCCCGGCCTCGGGCGACAACTCTTGCTCCGTGGTGGGGAC
GGGTCTGGCCTGCGACCAGACAGCTTCGACGCTGATGGTCAGTCTGGGCA
CCAGCGACACCCTGGTAGGCCTTACGCGCTCGCCCCGCCCGGGCCCCGAG
GGCCATGTCATGGTCTCTCCTCGCGGACCGGACGAGTGGTTCGCGATGCT
CTGTTACAAGAACGGGGCCTTGGCCAGAGAGGCGGTGCGAGACCGCGTGG
CCGGCGGGTGCTGGAAGAAATTTGACGACTTGGTGGCGTCGGCGCCGCCG
GGGAACGATGGGAACCTGGCGATGACGCTGGTAATGGAGGAAATCGTGCC
TGTGCTCCCTATTCGGGGCAGTTTCCGCGTGGACGCACAGGACGAGCCCG
TCGCCGCCTTGAGCGAGGCCCACGAAGCCCGGGCGGTGGTCGAGGCGCGC
TTCCTCTCCATGCGAGTACACGCTGGCAATCTGGGTCTGCCCACTGCCCC
TTCCCGCATCATTGCAACCGGCGGAGGGTCAATGAGCACGTCGCTCACGC
AGGTGCTGGCCGACGTGTTCAATGCCCCGGTCCTGGTGGCTGATTCGTCC
GAGGCGGCGGCGGTGGGGGCCGCCTTGCGAGCGGGACACGGGCTCAAGTG
CAAGAAACAAGCGCGGTGGGTTGAGCTTCTTGCCAGTCCCCTGAAAGACT
TCAAAGTTATGGCAACGCCGAATGCTCAAGCTGCAGCGGCGTATCCTGCC
ACCTTGCTGAAGCGTTTTGCAGCTTTTGAGCGTGGATTAGTTGCAAAAGC
GCAAAAGCATCCCCAAGCGCAGCAATCGAGAGAATAATATACATATGGTC
AATCTGTGCTTTATTTTGCCATTTTATGAGCACCGCGACAAGGATTAGAG
AAGAGGATGGTTTTCGCGGGCAACAAAGGGCCTCCAGGTTCTCGTATATA
TACGAGTTGTGTCCGACTTCTAGGGGTTCCCGTGGCCAAAGCATTACCCT
GTCTCATATTAGAGTTGTGAAATTTGCATACATTTGTACAGAGGAAGAAC
ATGATGGTGTGATCGCTGGGGTCCATGCAGTCAGGAAAGCCAGGCAGAGG
TCGTTAGATCGTGTCCAAGAGAGATAAGCAAGGCGTCGAGCCTCTGGTAT
TCATGGCACTTAATTCCTGCTTCTTTTTCCATGACAATCTGGGACGTTGA
CATAAGTATTGTGATATAATGAAGCAAATATCAGATTTTTATCGCTCCAA
CGCCTTTCACATTAAGTTTTCTTTCTTCCCACTGAGATCTCCCTCGGATA
TGTCCTGGCGCGGGACTAGCTGAATTGCCGCACTACGACATAAAATACTA
AGGCGATCATTTTCCACACCACGCGACATGATAAACAATGTCTACACAAA
GAAAAAGTGAGTAGAGGCATAGATGTCAGTGCAGTCGCTCCTTCTATCAT
GAGGTTTAGGGATGACGCAATGTTTTATCCC

Coding sequence (CDS) from alignment at KK037250.1:315354..317984-

>rna8855 ID=rna8855|Name=rna8855|organism=Nannochloropsis gaditana|type=CDS|length=1686bp|location=Sequence derived from alignment at KK037250.1:315354..317984- (Nannochloropsis gaditana)
ATGGCTGCGGGACGGGGCTTGGACGAGGCAAGCTCCCATGCTAACACCGG
CGGAGCATCGACTGCTCTCCTGTTAGGAATCGATCTGTCCACGCAATCCG
TCACAGTCGTATTTCTCGACGCGGGTACGAATCGCATCGTCCACATTGAT
ACCCTCAATTTCGACCGAGAGTTGCCTCAATTTGGAACGTCCGCGGGATT
GCACGTTGGTAAAAATGGCAAGGTGACCAGCCCTGTACAGATGTGGTTAG
TCGGTCTCGACAGGATCTTGCGACGTCAAGAACGGACTCTCATGGGTCGT
GTTAAAGCCGTGTCAGGCTCGGCACAGCAGCACGGAAGTATCTTTTGGAC
TGCAGACGGACTGGCAGCCTTGCGGTGCATGGCGCCGGCAGACAGCTTCT
CGTCCAATCTTTATGGCGGCTTTGCCCTGGAGGACTGCCCTACATGGGCC
GACTCCTCCACGCAAATGGAATGCGACGCCATCGAGTCCGCGACAGGTGG
TCCCGGGGCAATGGCGGCCTTGACTGGCTCGCGGGCTTACTGTCGCTTTA
CGGGCCCTCAGATCGCCCGCGTGGCCCGAACGGAGCCTCTCGTTTGGAAA
CACACGGCCCGCGTCTCTCTGGTCTCTTCCTTTTTGACTTCCTTGCTTGT
GGGACACCCTGCGCCTGTGGATGCGTCCGATGCATCTGGCATGAATCTGA
TGAACGTGCGGACCTCGGAGTGGTGCGAGGAGCTGCTGGAGGCCACAGCT
CCGGGGCTGGCGGCCCGGCTTGGGACCATTGTCAACCCCTGGGAGAGCCT
GGGGCCCATCTCTCCGTACTGTGCGGCCCGCTTTGGCTTTGTCACGGATT
GTTTGGTCATCCCGGCCTCGGGCGACAACTCTTGCTCCGTGGTGGGGACG
GGTCTGGCCTGCGACCAGACAGCTTCGACGCTGATGGTCAGTCTGGGCAC
CAGCGACACCCTGGTAGGCCTTACGCGCTCGCCCCGCCCGGGCCCCGAGG
GCCATGTCATGGTCTCTCCTCGCGGACCGGACGAGTGGTTCGCGATGCTC
TGTTACAAGAACGGGGCCTTGGCCAGAGAGGCGGTGCGAGACCGCGTGGC
CGGCGGGTGCTGGAAGAAATTTGACGACTTGGTGGCGTCGGCGCCGCCGG
GGAACGATGGGAACCTGGCGATGACGCTGGTAATGGAGGAAATCGTGCCT
GTGCTCCCTATTCGGGGCAGTTTCCGCGTGGACGCACAGGACGAGCCCGT
CGCCGCCTTGAGCGAGGCCCACGAAGCCCGGGCGGTGGTCGAGGCGCGCT
TCCTCTCCATGCGAGTACACGCTGGCAATCTGGGTCTGCCCACTGCCCCT
TCCCGCATCATTGCAACCGGCGGAGGGTCAATGAGCACGTCGCTCACGCA
GGTGCTGGCCGACGTGTTCAATGCCCCGGTCCTGGTGGCTGATTCGTCCG
AGGCGGCGGCGGTGGGGGCCGCCTTGCGAGCGGGACACGGGCTCAAGTGC
AAGAAACAAGCGCGGTGGGTTGAGCTTCTTGCCAGTCCCCTGAAAGACTT
CAAAGTTATGGCAACGCCGAATGCTCAAGCTGCAGCGGCGTATCCTGCCA
CCTTGCTGAAGCGTTTTGCAGCTTTTGAGCGTGGATTAGTTGCAAAAGCG
CAAAAGCATCCCCAAGCGCAGCAATCGAGAGAATAA

Synonyms

Publications