rna8852, rna8852 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8852
Unique Name	rna8852
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2643
Alignment location	KK037250.1:307190..309628 -

Link to JBrowse

Properties


Property Name	Value
Product	amidophosphoribosyltransferase
Orig transcript id	gnl\|cribi\|Naga_100051g4.8867.mrna
Orig protein id	gnl\|cribi\|Naga_100051g4.8867
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:307190..309628 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100051g4	gene8582	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21828.1	cds8822	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8852	rna8852-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:307190..309628-
coding sequence from alignment at KK037250.1:307190..309628-

mRNA sequence

>rna8852 ID=rna8852|Name=rna8852|organism=Nannochloropsis gaditana|type=mRNA|length=2643bp
ATGAAACTCGTGCAGGCGCTCGGTCAGCTCTCGGAGAAGGCGGGGAGGAA
GGCCACGTCTTCCCGGTACAGCTTCGACAAGCCGGTGGTCGTCATGTTCC
CCCAGGTGGCAGCGGCGTACTTGGCGCGCATTGCCAAGCCCATGGATACG
TCCACGCTGCGTGTCCAGCTCAAGGCTCACCAGTACGGGTCGCCCAAAGA
ATTTCTGCTGGACATGGACCTGATTTTTGCCAACGCCATCGCCTTCAACG
ACGGAGCGGCCACGCCCTACGAGCAGGAGGTCGTCTTGGTCTCCAATTAC
CTCCGGCGGCACCTGGATAGGCTCGCGCTGGAATGCCTGCCATTGGAGGA
GGAATATAAGCCCGGGGAGCGCTTGAATTTGTCGGAACAGCGCCGTGACG
AGAACAGGCAGCAGATGGAGGAGAAGGCGTCGCGGCAGTTGGCCACCATG
GCGGGGGGTGATGTGTACGGGCGATTTGCCTACCAAGAGATGCGGGAGCT
GATCCAGCAATTGAAGAAGGAACGACGCGTGGGGGAATTCTTCTGGGAGG
AGGTGAACAGGAACGAGAACCAGGGCTACTACCGGGTCATTGCCCGGCCC
ATCTGCTTTCGCGACATTTTGAAGAGCATGGACACGGAGACGGGCGTGCG
GGTGGGGCAGGTGGTAGCAGACATCCGCTTGATTTACCAAAATGCACTCC
AATTCAACTCGGGGACGGAAACTCTCGTCCCCATATCGCGCGTTATCTGT
GAGGCCGCCCGCTTGCTCCAACGGAGGCTGGAGGAGAAGCTCCCCCTCGT
CTACCTCCGAATCGCGGAGAACGTTGAGCGGCAATCAGAGCTGAGAGAGA
AGCTCAAGGTATTGCGCGCAGAAGACGAGAGACAACGCCACGCGGAGCTG
GCTGCTCTCACCACCGACCAGAACGCTGCCGGGTTGGCAGGAGGGGAGGC
GCTGGGTCCCAAAGGCGGGCTCGCGGGGAAAGGAGCTGGGGCTGTCTCGC
CCGCGGCTGCCGGCGGACCAAGTCTTCATTTTCCATCTCCGGGTGTGGAT
GCGCCCTCGCCGAGGTTCAGGAGCGACATGGAACAGGCTGCGGGTCATTC
ACAAAGTGGTCGAGTGGGAGGCAACCCCGCTGTCGGCGACCTGCCACAGA
CTGGTTCCCTGCTCGCCAACAAGCTGCGCAAGGAGAAGCGAAGGGAGGCA
GAACTGGACAGAAAGCACGAGGAACGGCGAAGGAAGGAGCGAGAGAGCAA
GCTGAAGGAAAGGATCACGCAGGAGGTCTGGGCTCGAGCACAAAAGGCAA
GAGAAAAAATGTTCGCAGCGAAAGAGCAGTCGTCGGCATTGAAGCAGAAA
GGCGAAGAGGACGAGGGGGGAAGGGAAGGAGCGATGGGGGGGCAACAGGA
TACGCAGAACGTGTCGTTGGGACGGGATGTGAGTGCGACGGCGGATGTGA
GAGTGGAGGACAACGGGGGTGGGGCAGCTTTCCAGCCTGTGGACTTGTCG
CGCCTAGGGACAAAGCCAGGTCGGCGCCACTCGGGGAGAGTAGAGAGGCA
GCCGGTGCGGTCTCTGCTTGCGGAACTCTTCCCGACCGTTGGCCATGATG
AAGAGGCCAAAAGTACCTCGCTCGGGAAAGAGCTTGACACAGCCACAGGC
GATGACAAGCAGAATGGGGGGGGCACTATCACTGAGGATCTGTTCGCACA
GCTTAACAGAGTTCCAGCGCCTGAAGCAGCAATACGAGGTGACATTGATA
CGAGCGAAAAGGGCGAGGAGGAAGGGGCGGAGGATGAGGAGTCCCTCTCG
GTGTGTTCTTCCCTACGGGACGCGGGAGATGACGCTTTGTGGGAGGATTC
GGATGAAAGAGCACGGCTGCGGAGACTGCGGCTGCTGCTGCGTGTCGTGA
GGGCCCCGGATATTCTAGGGGGGTCGGAGGGAGGGGGTCACAGCGAGGAG
GGAGCAGCAGGCCCCTGGGCTCCGTCCTTGATGCATGTGACTGTGATAGC
GGACGTGGAGGACCGGGTCCTGGGGGAAGAAGATCGGGGGGCGCACGGAG
GGGCGAAACGCCGGAGCCGACGTGTGAAGTTGCAGAGCCAGCGACCCGTG
GGATTGGAGATAAATGGTGGGGAGAGACGACTTATTTTGCAAGGGGAACG
GCAAAAAGTTAGAGCAGGGAGCCTCGAGGCGGCTGTGGCACTGAGACTAG
GCGGTCAGGTGGAGGTGCAGCTCATTGTGCCTTTGGCGCCCCGATCAGAC
TTTTCCAGCACTTCGATCTCGGTTCCAAATACGCCGGCGCTCGAAAATAT
CCGGTATCGTGAATGCCCCGTTTTGGCACCCCTGTTTCACGAAGCCAAGG
AGTGGTGTAAGGGGAGCCAAAGAGCCGATCTGGATATGCCTTCCGCGTTT
CGGTGGACCTGGGGCCGGCGCGGGTGCCAGCCGGGCACTGCCGCTGATTT
CTACCACTGGCTGGCTGGATTGAATTTGGCGATATGGGAGGAGGGTGACG
TGGCTTTTTCTCCCAGTATACGGGAGGAGGAGCGTCCACCACACTGCTCT
TCTCCAAAAGCACAAAGCGGAGATCGTTGTGGAGGAATAAGCACTTGTCT
CGTGCTTGTCATTTCTCTCGAAGTGAAATGTGATAAAATGTAG

protein sequence of rna8852

>rna8852-protein ID=rna8852-protein|Name=rna8852|organism=Nannochloropsis gaditana|type=polypeptide|length=522bp
MLTLRGNLGIGHVRYPTAGTSSCAEAQPLFTNYPYGICAAHNGNITNTAE
LRAALVQSLRHINTGSDSELVLNVFAEELQAQHKGRDICPTDVFEAVRKL
MARCHGAYGVVMLVNGVGLLGFRDPHGIRPLVLGTRNSTTQAGLTDFLLA
SESVAIDTLRFSLVGDVGPGEAILITTEGKLHRSQCARSPQLMPCIFEYV
YFARPDSIMDGVQVYEARLNMGERLAESILRKYPQHDIDVVIPVPDTSRT
SGLSCAYTLGRPFREGFIKNRYIARTFIMPGQAVRMKTVRMKLNTIRSEF
RGKNVLLVDDSIVRGTTSRELVSMAREAGARKVYVTSAAPAVRYPNVYGI
DIPTRMELIANERDEAQVAAELGADWVVYQALEDLKTSIRKINPSIQEFD
ASCFDGRYVTGDITDEYLVELQGGRGKKQGHQQQQAEVLRVRAERKMVSE
TSENHKTWNAHDGNHSANNCVDGAPAEAGAPAPAGMGPGAASVSTRLSSA
CGEKKLGGSCEVLFNLGRETTK

mRNA from alignment at KK037250.1:307190..309628-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8852 ID=rna8852|Name=rna8852|organism=Nannochloropsis gaditana|type=mRNA|length=2439bp|location=Sequence derived from alignment at KK037250.1:307190..309628- (Nannochloropsis gaditana)
CAGCATTCAAAATTGAAATTTTCTGTTTTTATATACTCACACTCAACTAG
TCGCTCTTCACATTCCCGCTCCATCTCAAGTCTGGGGTTTATTGTAAGAC
ACGCAAAGCGTTAGCAAGATGTGTGGAATACTGGCAGCGTTATTGGGGGA
CGCTGACACGCACGTAAATCAGTTGATCGTGGACGGCCTGACAGTTTTGC
AGCACCGGGGACAAGGTACAGAGGGAGATGGGGGATGTTAGGGATGATTC
GGGCCAGCAGTCCAGGGGGAGAGAACAGGCGAGAGTTCTTGTGGCCGGTA
GATGTGCTGGCATTGCTGCTGCTTACCTGGATTGGAGGCAATCAGAAACA
TTCTGATGACTTTGTTTTTGATTCGCAGAAAACTACACCCGGAAGCTGAA
GGTTGAGAAAGGATTTCATTGCTTGAGCTTTGGCGTCTGAGCAAGACAGT
CGAGCTTTATTAATATGTTACAGAGGGCCTCACGTTTTCTCTTCCCTTAT
CTGTGACGTTTGTAGACGCGGCAGGGATCGTCACGTGCGAGAAGGGCCAC
TTGAACCTTCGCAAGGACAGTGGGCTTGTCTCGGAGGTTTTTCAGCACCA
CCACATGCTGACGCTTCGGGGGAACCTGGGAATCGGTCACGTGCGATATC
CGACGGCAGGCACGTCGTCTTGTGCCGAGGCGCAGCCTTTATTCACGAAC
TATCCTTACGGGATCTGCGCCGCGCACAACGGGAATATCACCAACACGGC
CGAGCTCCGGGCGGCCTTGGTGCAGAGCCTACGCCACATCAACACGGGGT
CCGACTCAGAGTTGGTGCTCAATGTGTTCGCGGAAGAGCTCCAGGCTCAG
CACAAGGGTCGGGATATCTGTCCCACAGACGTGTTCGAGGCAGTGAGGAA
GCTGATGGCCCGCTGCCACGGGGCCTACGGCGTGGTCATGCTCGTCAACG
GCGTCGGCCTCCTAGGCTTCCGCGATCCCCACGGCATTCGTCCCTTGGTG
CTGGGCACGCGGAATTCAACGACTCAAGCGGGGCTTACGGACTTCCTCCT
CGCCTCGGAGAGCGTGGCCATCGACACCCTGCGCTTCTCCCTGGTGGGGG
ACGTGGGCCCCGGGGAGGCCATCCTCATTACCACGGAGGGAAAGCTGCAC
CGGTCCCAGTGCGCCAGGAGCCCCCAGCTCATGCCTTGCATTTTTGAGTA
CGTGTACTTCGCCCGGCCCGACTCTATCATGGACGGCGTCCAGGTTTATG
AGGCCCGCCTGAACATGGGCGAGCGACTGGCGGAGAGCATCCTGCGGAAG
TACCCCCAGCACGACATCGACGTGGTGATCCCGGTGCCCGACACCTCGCG
GACTTCGGGTCTCTCCTGCGCCTACACCTTGGGGAGGCCTTTCCGGGAGG
GCTTCATCAAGAATCGTTACATTGCGCGCACCTTCATCATGCCCGGACAG
GCCGTCCGGATGAAGACGGTGCGCATGAAGCTCAACACCATCCGCTCCGA
GTTCCGGGGCAAAAACGTGCTGCTCGTCGACGATTCCATTGTGCGAGGGA
CCACGTCACGGGAGCTGGTCAGCATGGCGCGAGAGGCGGGCGCCCGGAAA
GTCTACGTGACCTCGGCCGCCCCCGCGGTCCGCTACCCTAATGTGTACGG
CATTGACATCCCCACCCGCATGGAGCTGATCGCAAACGAGCGGGACGAGG
CCCAGGTGGCGGCCGAGCTGGGGGCGGACTGGGTGGTGTACCAGGCCTTG
GAGGACCTGAAGACCAGTATCAGGAAGATCAACCCCTCCATCCAGGAGTT
CGATGCCTCCTGCTTCGACGGCCGGTACGTCACGGGCGACATCACGGACG
AGTACCTGGTGGAGCTGCAAGGTGGCAGAGGGAAGAAACAGGGGCACCAG
CAACAGCAGGCGGAAGTACTGCGGGTCCGAGCCGAGAGGAAGATGGTGAG
CGAGACGTCCGAGAATCACAAGACCTGGAACGCGCACGATGGTAATCACT
CTGCCAACAATTGTGTTGATGGAGCTCCAGCGGAGGCTGGGGCACCGGCG
CCGGCTGGCATGGGTCCTGGAGCAGCGAGCGTGAGCACGAGACTTTCAAG
CGCTTGCGGGGAGAAAAAGCTTGGAGGGAGCTGCGAGGTGCTGTTTAACT
TGGGGCGAGAGACGACTAAATGAAAATAACGACCGGGAACGATTGACGAG
GACTATAGCAGAGAACTGTTCTCTCGTGGATTGAATCGTCAGGCACTGGC
ATTGAGACTCGATGACGACACTTCTGGAAGGCTCGGGGGAAGGATCCTTG
TGCTAATCTCCGCGCCACCTTCCCTGCGACGACTGAGCTTTTGACAGGAC
TTGGTTCATCCATGCCCCTTTGATTGTAAGATATGTGTACATACAGTCTT
CATCTCTAGAAAAGTTTAAAAGATACTAAACCCAAAGAT

Coding sequence (CDS) from alignment at KK037250.1:307190..309628-

>rna8852 ID=rna8852|Name=rna8852|organism=Nannochloropsis gaditana|type=CDS|length=1569bp|location=Sequence derived from alignment at KK037250.1:307190..309628- (Nannochloropsis gaditana)
ATGCTGACGCTTCGGGGGAACCTGGGAATCGGTCACGTGCGATATCCGAC
GGCAGGCACGTCGTCTTGTGCCGAGGCGCAGCCTTTATTCACGAACTATC
CTTACGGGATCTGCGCCGCGCACAACGGGAATATCACCAACACGGCCGAG
CTCCGGGCGGCCTTGGTGCAGAGCCTACGCCACATCAACACGGGGTCCGA
CTCAGAGTTGGTGCTCAATGTGTTCGCGGAAGAGCTCCAGGCTCAGCACA
AGGGTCGGGATATCTGTCCCACAGACGTGTTCGAGGCAGTGAGGAAGCTG
ATGGCCCGCTGCCACGGGGCCTACGGCGTGGTCATGCTCGTCAACGGCGT
CGGCCTCCTAGGCTTCCGCGATCCCCACGGCATTCGTCCCTTGGTGCTGG
GCACGCGGAATTCAACGACTCAAGCGGGGCTTACGGACTTCCTCCTCGCC
TCGGAGAGCGTGGCCATCGACACCCTGCGCTTCTCCCTGGTGGGGGACGT
GGGCCCCGGGGAGGCCATCCTCATTACCACGGAGGGAAAGCTGCACCGGT
CCCAGTGCGCCAGGAGCCCCCAGCTCATGCCTTGCATTTTTGAGTACGTG
TACTTCGCCCGGCCCGACTCTATCATGGACGGCGTCCAGGTTTATGAGGC
CCGCCTGAACATGGGCGAGCGACTGGCGGAGAGCATCCTGCGGAAGTACC
CCCAGCACGACATCGACGTGGTGATCCCGGTGCCCGACACCTCGCGGACT
TCGGGTCTCTCCTGCGCCTACACCTTGGGGAGGCCTTTCCGGGAGGGCTT
CATCAAGAATCGTTACATTGCGCGCACCTTCATCATGCCCGGACAGGCCG
TCCGGATGAAGACGGTGCGCATGAAGCTCAACACCATCCGCTCCGAGTTC
CGGGGCAAAAACGTGCTGCTCGTCGACGATTCCATTGTGCGAGGGACCAC
GTCACGGGAGCTGGTCAGCATGGCGCGAGAGGCGGGCGCCCGGAAAGTCT
ACGTGACCTCGGCCGCCCCCGCGGTCCGCTACCCTAATGTGTACGGCATT
GACATCCCCACCCGCATGGAGCTGATCGCAAACGAGCGGGACGAGGCCCA
GGTGGCGGCCGAGCTGGGGGCGGACTGGGTGGTGTACCAGGCCTTGGAGG
ACCTGAAGACCAGTATCAGGAAGATCAACCCCTCCATCCAGGAGTTCGAT
GCCTCCTGCTTCGACGGCCGGTACGTCACGGGCGACATCACGGACGAGTA
CCTGGTGGAGCTGCAAGGTGGCAGAGGGAAGAAACAGGGGCACCAGCAAC
AGCAGGCGGAAGTACTGCGGGTCCGAGCCGAGAGGAAGATGGTGAGCGAG
ACGTCCGAGAATCACAAGACCTGGAACGCGCACGATGGTAATCACTCTGC
CAACAATTGTGTTGATGGAGCTCCAGCGGAGGCTGGGGCACCGGCGCCGG
CTGGCATGGGTCCTGGAGCAGCGAGCGTGAGCACGAGACTTTCAAGCGCT
TGCGGGGAGAAAAAGCTTGGAGGGAGCTGCGAGGTGCTGTTTAACTTGGG
GCGAGAGACGACTAAATGA

Synonyms

Publications