rna8841, rna8841 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8841
Unique Name	rna8841
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2313
Alignment location	KK037250.1:282990..283422 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100169g11.556.mrna
Orig protein id	gnl\|cribi\|Naga_100169g11.556
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:282990..283422 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100169g11	gene8571	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8841	rna8841-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21865.1	cds8811	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:282990..283422-
coding sequence from alignment at KK037250.1:282990..283422-

mRNA sequence

>rna8841 ID=rna8841|Name=rna8841|organism=Nannochloropsis gaditana|type=mRNA|length=2313bp
ATGCAGATGAATGGAAAAGATGACAAAATGGTAATAAAGGTACTTTGGAT
TCTCTCTATGCCGCGCCCCGGTCGGCGTTGTCTTTCCAGCATTGCGTTAT
CTTTCAAGGGAGTTGAAGCACGGTATGACAGGAGGTCTGCCATCGCGTCC
TGTGTACCAGCCGGGAAATCGAACATTTTCGGTTGTGGAAGGTTGACAGG
AGATATGGAACAGATGACAAGACAATATGCCACAGTAAAGAATAACTCTG
GTAAGTCAGGTCGCCGCAAGACGCGACCGCTGGAAAAGCTAGCGCCCTCA
GGGAACAAAAAGCCAGCAGGCCAAGACATGCTCGTTTATGAAGAAGAAGA
CACCGAGGACTGGAGCTCGTTTTTGGAAGAGTATGATGCGTTGGAAGCAG
AAGATGGCATGAGGGTCGCGTCGGATGCCTCTGCTTCTCAAGTCTCGGAG
GACGCTAAAATAGTGGAGGAGTATAGGCTTGAAGAGGATGCGGACGGAAA
CCTGCAAGTGATGCCCACAAAAAGAGAAGGGCTTAAATCGAAGATAAAAT
CAGCACACAATCTGCTGCAAAAGGCTCGTCAAGCAGGTGCCATGACGGAA
GATGATTGGTTCGAGTTTTTGCGGCGCACCGGCATGGACCGATCAGAGGA
AAACGATTTTCAGAGTGCCTTTTTCGAGGACGTTGGCGAGGGAGAACCTT
CTATCAAGCATCCCCCTCCTTTGCGAAAAGGCAGACACATGCGCAAGGCC
CCGCCAAAATTTGTGGACCGGATAGGCGTGGCCGTGACCGGAGGTAAGGG
CGGAAAGGGATGCATTAGTTTCGAGAAGATGGCAAACGCCAGAGGAGGGG
CGGTCAAACGTCCCTCGGGGGGCCACGGAGGCCAGGGTGGGGACGTGATT
TTTGTCGCGGATCCGCGCGTGCAGAGCCTGGGGATGGACCGGCACCATTT
CCATGGCAAGGCAGGGGGCTCTGGGGACTCGAACAAGAAACACGGGGCCC
GCGGTGCGCACGCGGTCGTTCGCGTCCCTTGCGGCACGGTGGTCAAGGAG
GTCTTGCGGAGCGGCAGGGGCGGGGGATATGAGCGGGTCCAAGTCTGCGA
CCTAGATCAGCCTTTAAGCTACTACCGGGCTGCCACAGGGGGACGCCCGG
GACTGGGCAACTCCGTGCAGGCGGGGCGAGCCCGTAACTCCGCCTCTGCC
TCCGGCAATTTTCGGTCCCCTGGCCATCAGGGTGAGGAGCGGTTCTATGA
GTTGGAGCTTAAAACGATCGCGGATGTGGGCCTGGTCGGCTACCCAAATG
CAGGAAAGTCCACCCTCTTGGGTGGGCTCTCCCGGGCCCGGCCGGCGGCA
GCCGCTTATGCTTTTACCACCCTCCACCCCACTGTGGGCCGAGTCGAGTA
CACGGATGCGGCCAGCGTGACGGTCGCGGACTTGCCCGGTCTTATCGAAG
GGGCTCACGCCAACAAGGGCTTGGGTCACGAGTTTCTCAGGCACATCGAA
CGGACCAAGGTACTGGTCTACGTGCTCGACGGGGTGGGGAGAGAGGGTGG
GGCGGGCGTGGACGACGGCAGTGTCGTGGAGGAGGCACCGGTGACTGTGT
TTCGGAAGTTAAAGAAAGAGCTGGAGCTGTACTGCCCTGGCTTGTCGCGC
CGCCCATCGTTAGTGTGGCTAAACAAAGCCGACTTGAACGCGGAGTGGGT
CAGCGAGGCCAAGGCGGCTGTGATGGCCGACATGAGCGGAGACGATGCAA
CAGCTGACCGCCCACAGGCATGGGGGGAATCGACGATGGGCCAGCGGGGG
CGGGTCCCGAATGTTCTTTCGGGCAGTGCACGCACGGGGGAAGGGATAGG
TGAGCTTGCGCACGAATTACGACGGGTTGTGGATAGGGTGGCTCAGGAGG
ACGAGAAAGCACAGGGTTACGGCGGAGGAGGAGGACATGGCGGTGGTGAG
GGCGGGAAGCTGTGGGCAAGGGAGACGGGGGGCTCGGATCACGCGCTCCC
GCACCGCCAGGGTGGGATTGAAGGCGTGGGCGGTAGGAATACCACGAAAA
GTGAAGGTTCATTTGTAACAGCTGATGTTGATTCGGCGGCGGATGATAAG
ACCATAAGCCTTGCTGAGGCATACGCAAAGGCCTTGGAGTTGACTCAGAG
ATTCAATGTTGAGTGGATGAATGCAGTGCAATGTGCGAATCAGAATATAC
ACCGTGCGCAATGCTATTCTGCGGCTTTGACAGTAACTTATCGGCAGGAC
TACTGGCTCGCACACGGGATGAGAATGATGAAAGCAGGAGAGCAAACGCG
GAGCGAGAGTTGA

protein sequence of rna8841

>rna8841-protein ID=rna8841-protein|Name=rna8841|organism=Nannochloropsis gaditana|type=polypeptide|length=93bp
MFHKNCTCTLSGSAVYIMDSDGGNVTNQTRNPRGEESGKQRMPRLQRSSS
LCRKNNNYSFLARQSADLTILAMKNVQGWTQPGEMEQAGKIRG

mRNA from alignment at KK037250.1:282990..283422-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8841 ID=rna8841|Name=rna8841|organism=Nannochloropsis gaditana|type=mRNA|length=433bp|location=Sequence derived from alignment at KK037250.1:282990..283422- (Nannochloropsis gaditana)
ATGTTTCACAAGTATAGCCGCATCCAATAAAAGTTTTATTTAATATTCAG
TCCTTTTTCTACATCGTGACATCTCCTAATAAAGAAATCCTATGGGGCCG
CCCGTTTCAATCCCAGAGCCTAGGATGGGAGGTTGACAACAATCGTCATC
TGATGCACGTAGGAATTGTACTTGTACATTGAGTGGATCTGCTGTCTATA
TTATGGACTCAGATGGAGGCAATGTGACGAATCAGACGCGGAACCCTAGA
GGAGAAGAAAGTGGGAAGCAGCGAATGCCAAGATTACAACGAAGCAGCTC
TTTATGTCGCAAAAACAACAACTATAGCTTCCTGGCAAGACAGAGCGCCG
ACTTGACGATCCTGGCGATGAAAAATGTGCAAGGTTGGACACAGCCGGGA
GAAATGGAGCAGGCTGGAAAAATCCGAGGATGA

Coding sequence (CDS) from alignment at KK037250.1:282990..283422-

>rna8841 ID=rna8841|Name=rna8841|organism=Nannochloropsis gaditana|type=CDS|length=564bp|location=Sequence derived from alignment at KK037250.1:282990..283422- (Nannochloropsis gaditana)
GAATTGTACTTGTACATTGAGTGGATCTGCTGTCTATATTATGGACTCAG
ATGGAGGCAATGTGACGAATCAGACGCGGAACCCTAGAGGAGAAGAAAGT
GGGAAGCAGCGAATGCCAAGATTACAACGAAGCAGCTCTTTATGTCGCAA
AAACAACAACTATAGCTTCCTGGCAAGACAGAGCGCCGACTTGACGATCC
TGGCGATGAAAAATGTGCAAGGTTGGACACAGCCGGGAGAAATGGAGCAG
GCTGGAAAAATCCGAGGATGAATGTTTCACAAGAATTGTACTTGTACATT
GAGTGGATCTGCTGTCTATATTATGGACTCAGATGGAGGCAATGTGACGA
ATCAGACGCGGAACCCTAGAGGAGAAGAAAGTGGGAAGCAGCGAATGCCA
AGATTACAACGAAGCAGCTCTTTATGTCGCAAAAACAACAACTATAGCTT
CCTGGCAAGACAGAGCGCCGACTTGACGATCCTGGCGATGAAAAATGTGC
AAGGTTGGACACAGCCGGGAGAAATGGAGCAGGCTGGAAAAATCCGAGGA
TGAATGTTTCACAA

Synonyms

Publications