rna8800, rna8800 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8800
Unique Name	rna8800
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3767
Alignment location	KK037250.1:200069..201301 -

Link to JBrowse

Properties


Property Name	Value
Product	udp-glc gal endoplasmic reticulum nucleotide sugar transporter
Orig transcript id	gnl\|cribi\|Naga_100070g26.4236.mrna
Orig protein id	gnl\|cribi\|Naga_100070g26.4236
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:200069..201301 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100070g26	gene8531	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21922.1	cds8770	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8800	rna8800-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:200069..201301-
coding sequence from alignment at KK037250.1:200069..201301-

mRNA sequence

>rna8800 ID=rna8800|Name=rna8800|organism=Nannochloropsis gaditana|type=mRNA|length=3767bp
CGAGGCTTAGGGGGGTTACTCCATGCCCTCGTGGCCGCGTCCGGGCGAAA
ATGCCATTTTCAGGGCTGGTTTTTGTCCGCTGCTGGTGCGGTTGTAGTCG
TGTGCGAAGTATGACAATGCATTTTGTGTCGTATCTTCTATTGGTTCATG
AAGAAGCATGATCTCAGCCGACGCTTTCAGCTCAACTTGCTCGAATGACT
AATCCTCATTTTATTTTTTTGTGGGAAATGAAGCTCTGTGCAACCCTGCT
GTACCTACGTTCTCAACTTCGTTTCGGTGGCTTGAGAGGAGGGACGTCAC
TTCAGTCCTTTCCGCACTTTTGTGTCAGGTAGCTCCACATTTTCCGGGAA
CAAGTAACTTCGACGCCGACACTGGATGGAAAATGACTTCGGCAAACGCA
GTCTGGATGGACCTGCGCCTGTGACAAACTCCGCCATAACAGCCCATCCT
TTACGATTTTGTCTCACCTTGTTGGCAGAGGAATGCTTGAAGAGCAACCA
ATCCTTGCCTCCCTCCGTCGACCTGTCGGAGCTGCCTGTGGCGATGGGGC
GTGCGTGTGGCCAGGCACAAGGCACCTTAAATTACGCGAAAAGGGTTAGC
TTGATGGGCATCGGCATCAGTCGGCAGCATTGCAGCCTTGTCCAAGGGCC
GGATAACTCCCTGCAAATAGTGGACGAGTCCTCGCAAGGGGTCGCCGTCA
ATGGCGTGCGGATCCCCCCGCAGACGCCTCGGACTTTGAAGGTAGGTGAC
GTTGTCGTCTTGGGGTTGCCCATGGCGCACGATCATCCAGTGGGGGCTCT
CAGCTCCTCAGGATCCGGGAGCATGAGCAAAGGAGGTGCCGTCTTCCGTG
TTGATTGCCTGCCAGCAGACAGGGCCCGTGACTCTCCGGCCGTCAGAGAA
AGCGACGCCTTGAACGCGGAAGAGACTTCTCCCTCTTCGATATCTGCCAC
TTCAACTTGGACTGACACACCAGCAGTGTGCACCATGTCGTCAGCCGATG
CAGCATCTGCACACCAGGGGGGCGCTTGCAATAAGCCTGGCAGGCAGGGA
GACGGCGCAGCGTCACTGGACGTAGCTAACGAAAGCGAGCACCTCGAAAG
AGGGGAGAGGAGTCAAGTAGAGGCCGAGAGTACTGCGAAGGAAGCGGGTG
GCGAACATGAGGGCGTGGCCCAGGAGAGCGACAGGAACAGCGATGTGGAG
ATTGTGGAGGTCCGGTCGGCCGCGACCGTCCCTCCAAGGGGCGCGCGGAA
ACGAAGGCGGCCGGTCCAGGTCGTCTCGCTACTGGACGACGACGACGAGG
ATGAGGCTGAAACGATCATCGGTGCCCTGGACGCTGGGGCCGGGAGGGGC
TGGCAGGAAAGTCAGATGACGCGGTCGGCGGGTGTGTGTAGGGCCGCTGC
TTGCGCCGAGGAGAAGGAGTACAAGCGGCGGTGGTTGAAAGCCTTGGAGT
GCCCCGTCTGCATGGAACCTCTATGTGCTGCGGCCCACATGTCTTGTGGA
CACATAGCTTGCTTCACATGCATCCATCGACGCTTTGCGCTGCAGAGCGT
GGAAGACGGCAGCGCATATGGCTTCCAGGACCGAAAACGATTGTGCCCGG
TCTGCCGTAAAGCCGTCTTCTTCATGAGCCGGGACGTGAAGATGGACGAG
CTGGTGGACGAATCGATGAGCAACCATGCGGATAGAATGACAACCGCGGA
GCGCGCAGTGTGGGAGAGGAGAAAGCGTGATGGGTTGGCTTTGAGCCAAT
TTTATGAAAGGAAAATTCACAATAATCCGCAGAATCTCGTTCATCGCCGG
AGAGAGATAGGTGTCAAAGTCTCGATCAAGACGGTCACGGCGTCGGGGTC
TAGGAGGGGAGATATGAGTACACTCTGCTCTGAATGTCGACAGGCTATCG
GAGGTCCGAGCGGGCGCTACATTGCAGTGTGGAAGCTCACCCCGACGCAG
GGCTTCCGGCCCGTGCCCTGTGTGGCAAGTGTGCACCTGGAGTGCTTGAA
ATCCTCCACCTGCAAGGCGATCAGGGCTGGTCTGTCACCTGACGGCATTT
TGTCTTTGCTCTATCGACTGGATGTGCTTGGTCTGCTTGCCGACGAAGAG
AATGGGATAGAGGGCTTCAGGAAGAAGGTCTTTCAGGCCTTGAGCGAGGA
ACGCCAGGAATACCCTTGGTGGGTTGACGGAGCTGTAAGGCTTCAAATAT
GCGGCCAGGACATCCGTGGATAGAGTCATCATGTAAATAATGCCGATCTA
AACAGTTTTAATCCTTCTAGCATGATACTCCTCGAATCGCCTTCTTTGAC
CGTTATCGCCAGAGACCGTATTCCAATGTTTTCTCGAGAAGCCCTGCGCA
GCAGCTCTTAACGAGAGCGGAGGAACGACTGAGGGAGCCATTTCTCGAGC
GTCCCCCCTCTGGACATGACAGACAATCGAATCAGAAGCTATAGGATAGA
GCATATTGAATGCGAAGAATTTTACCGGTGTACATAGCCGGTACCTCCTT
CTTAAAACTTAAGTTTTAAAAAAATGTTCTTTGAAAGCTTTTCCCACAAG
ACATCACATATTTATGCATGCTCTTCCTCTCACTCACGTGTACCTCATTT
GTCCTGCTGAGTGCGCAATCTTCGTATGGATTTTCCTCGTTTCCATTACT
CGATGACAGCTCTCACAAAAAAAAACTACGCTGTCTTCGCTTTGGACTCT
AATGGGCCGTGGCCGTGGTCCCCGCCGCTCTGAAAGATCTTGATGCAGAG
GCCCAGGAATACAGAAAACACTCCCATCCACTGCCACCAGTGCACTGTAT
GCTTGTAAATGACGATACTAATGAAAAGTGTTATTATTTTCCGGGTTATT
GTGACGGTGACACAGGTCAGACTCCCGAATTCGTCAATGATACTGTATAT
GAAGACCTGGCCGAGGGCGTTGGAGAAACTGAAGGTAAGAATGTCCGTGA
TGATGGCCGGGTAGGCAGTCAAAAAATGGATTGTGTAGGCCAATTGTGAG
CCCTGATTGCGCCAAATCAGGTCCAGAAGAAGGAAGCTTAATGCGAAGCA
AAGGGACCAAGTATTGACCATGGCCATCATGTAGTACGGAGAGACGCGAT
GTTTCTTGTTGATGCGATCTTGCTCCGCATTAGTGAATCCATCGATGAGT
AGATTAATTATAGCCATACAGAGGCCACGCAGCTCCTGCAGAGAAAAACT
GGAATAAACCATTCCTCCTAGGGCCTGAATTATCATCCATAAATTGTCCC
GCGCGATCGCGTCCCCAAGACTGGAACGTCTTGGGTGGCTTGCAGTGCGT
ATGGACTTGCTCCAGCCAGAATCGTGACCAACGTCCGCATCGCTTACTTC
AGGACCTTTGAACATAAAAAGCATGACTCCGCATGAAATCAGAGCGACAG
CAGCATATTCGTGAGGCTTATATCGAACGCCGTTCACAAGCGCGCCGACT
AACATGACAGGTAAAAGCTTGCAATTTTTGACGAGAATAAGAAGAGGATA
GCTTATGTCTCGCAACGACAAGTACCCTATTGGCGAGGCAAGAGTATTAG
AGAGCGCAGGGCGCCAGAAAATTGAGAATGGTGCCGTGGTGCCTTTGTTG
ACCTGGTGCAGAAGCACGCCGACTATAGTCGCTGCAGCGGCCATGAAGGC
ATTAAGAGTGATCATGGCATTAAAAATGCCTGGTTTTTCTTGGCGTCCGG
CAGCAGATTTATATGCGGTGGTGGTGACTTTCTCCTGCACAAAGCCCCAA
TAAATGAAACAAACATA

protein sequence of rna8800

>rna8800-protein ID=rna8800-protein|Name=rna8800|organism=Nannochloropsis gaditana|type=polypeptide|length=410bp
MVQTRRMTMTTKAANTDFTKRDETFTANPPKKNISNAIRLMAKALGIYVC
FIYWGFVQEKVTTTAYKSAAGRQEKPGIFNAMITLNAFMAAAATIVGVLL
HQVNKGTTAPFSIFWRPALSNTLASPIGYLSLRDISYPLLILVKNCKLLP
VMLVGALVNGVRYKPHEYAAVALISCGVMLFMFKGPEVSDADVGHDSGWS
KSIRTASHPRRSSLGDAIARDNLWMIIQALGGMVYSSFSLQELRGLCMAI
INLLIDGFTNAEQDRINKKHRVSPYYMMAMVNTWSLCFALSFLLLDLIWR
NQGSQLAYTIHFLTAYPAIITDILTFSFSNALGQVFIYSIIDEFGSLTCV
TVTITRKIITLFISIVIYKHTVHWWQWMGVFSVFLGLCIKIFQSGGDHGH
GPLESKAKTA

mRNA from alignment at KK037250.1:200069..201301-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8800 ID=rna8800|Name=rna8800|organism=Nannochloropsis gaditana|type=mRNA|length=1233bp|location=Sequence derived from alignment at KK037250.1:200069..201301- (Nannochloropsis gaditana)
ATGGTGCAAACACGCCGGATGACCATGACAACGAAAGCAGCCAACACGGA
CTTTACCAAGAGGGATGAAACCTTCACTGCCAACCCCCCCAAAAAAAATA
TCAGTAACGCGATTCGACTGATGGCAAAAGCCCTGGGTATTTATGTTTGT
TTCATTTATTGGGGCTTTGTGCAGGAGAAAGTCACCACCACCGCATATAA
ATCTGCTGCCGGACGCCAAGAAAAACCAGGCATTTTTAATGCCATGATCA
CTCTTAATGCCTTCATGGCCGCTGCAGCGACTATAGTCGGCGTGCTTCTG
CACCAGGTCAACAAAGGCACCACGGCACCATTCTCAATTTTCTGGCGCCC
TGCGCTCTCTAATACTCTTGCCTCGCCAATAGGGTACTTGTCGTTGCGAG
ACATAAGCTATCCTCTTCTTATTCTCGTCAAAAATTGCAAGCTTTTACCT
GTCATGTTAGTCGGCGCGCTTGTGAACGGCGTTCGATATAAGCCTCACGA
ATATGCTGCTGTCGCTCTGATTTCATGCGGAGTCATGCTTTTTATGTTCA
AAGGTCCTGAAGTAAGCGATGCGGACGTTGGTCACGATTCTGGCTGGAGC
AAGTCCATACGCACTGCAAGCCACCCAAGACGTTCCAGTCTTGGGGACGC
GATCGCGCGGGACAATTTATGGATGATAATTCAGGCCCTAGGAGGAATGG
TTTATTCCAGTTTTTCTCTGCAGGAGCTGCGTGGCCTCTGTATGGCTATA
ATTAATCTACTCATCGATGGATTCACTAATGCGGAGCAAGATCGCATCAA
CAAGAAACATCGCGTCTCTCCGTACTACATGATGGCCATGGTCAATACTT
GGTCCCTTTGCTTCGCATTAAGCTTCCTTCTTCTGGACCTGATTTGGCGC
AATCAGGGCTCACAATTGGCCTACACAATCCATTTTTTGACTGCCTACCC
GGCCATCATCACGGACATTCTTACCTTCAGTTTCTCCAACGCCCTCGGCC
AGGTCTTCATATACAGTATCATTGACGAATTCGGGAGTCTGACCTGTGTC
ACCGTCACAATAACCCGGAAAATAATAACACTTTTCATTAGTATCGTCAT
TTACAAGCATACAGTGCACTGGTGGCAGTGGATGGGAGTGTTTTCTGTAT
TCCTGGGCCTCTGCATCAAGATCTTTCAGAGCGGCGGGGACCACGGCCAC
GGCCCATTAGAGTCCAAAGCGAAGACAGCGTAG

Coding sequence (CDS) from alignment at KK037250.1:200069..201301-

>rna8800 ID=rna8800|Name=rna8800|organism=Nannochloropsis gaditana|type=CDS|length=1233bp|location=Sequence derived from alignment at KK037250.1:200069..201301- (Nannochloropsis gaditana)
ATGGTGCAAACACGCCGGATGACCATGACAACGAAAGCAGCCAACACGGA
CTTTACCAAGAGGGATGAAACCTTCACTGCCAACCCCCCCAAAAAAAATA
TCAGTAACGCGATTCGACTGATGGCAAAAGCCCTGGGTATTTATGTTTGT
TTCATTTATTGGGGCTTTGTGCAGGAGAAAGTCACCACCACCGCATATAA
ATCTGCTGCCGGACGCCAAGAAAAACCAGGCATTTTTAATGCCATGATCA
CTCTTAATGCCTTCATGGCCGCTGCAGCGACTATAGTCGGCGTGCTTCTG
CACCAGGTCAACAAAGGCACCACGGCACCATTCTCAATTTTCTGGCGCCC
TGCGCTCTCTAATACTCTTGCCTCGCCAATAGGGTACTTGTCGTTGCGAG
ACATAAGCTATCCTCTTCTTATTCTCGTCAAAAATTGCAAGCTTTTACCT
GTCATGTTAGTCGGCGCGCTTGTGAACGGCGTTCGATATAAGCCTCACGA
ATATGCTGCTGTCGCTCTGATTTCATGCGGAGTCATGCTTTTTATGTTCA
AAGGTCCTGAAGTAAGCGATGCGGACGTTGGTCACGATTCTGGCTGGAGC
AAGTCCATACGCACTGCAAGCCACCCAAGACGTTCCAGTCTTGGGGACGC
GATCGCGCGGGACAATTTATGGATGATAATTCAGGCCCTAGGAGGAATGG
TTTATTCCAGTTTTTCTCTGCAGGAGCTGCGTGGCCTCTGTATGGCTATA
ATTAATCTACTCATCGATGGATTCACTAATGCGGAGCAAGATCGCATCAA
CAAGAAACATCGCGTCTCTCCGTACTACATGATGGCCATGGTCAATACTT
GGTCCCTTTGCTTCGCATTAAGCTTCCTTCTTCTGGACCTGATTTGGCGC
AATCAGGGCTCACAATTGGCCTACACAATCCATTTTTTGACTGCCTACCC
GGCCATCATCACGGACATTCTTACCTTCAGTTTCTCCAACGCCCTCGGCC
AGGTCTTCATATACAGTATCATTGACGAATTCGGGAGTCTGACCTGTGTC
ACCGTCACAATAACCCGGAAAATAATAACACTTTTCATTAGTATCGTCAT
TTACAAGCATACAGTGCACTGGTGGCAGTGGATGGGAGTGTTTTCTGTAT
TCCTGGGCCTCTGCATCAAGATCTTTCAGAGCGGCGGGGACCACGGCCAC
GGCCCATTAGAGTCCAAAGCGAAGACAGCGTAG

Synonyms

Publications