EWM21939.1, cds8740 (CDS) Nannochloropsis gaditana

Overview
NameEWM21939.1
Unique Namecds8740
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:122407..124005 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21939.1
Productbrca1 brca2-containing complex subunit 3
Orig transcript idgnl|cribi|Naga_100220g6.7214.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:122407..124005 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006464cellular protein modification process
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR000555JAMM/MPN+_dom
Homology
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|585102286|gb|EWM21939.1| (brca1 brca2-containing complex subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 1079.7 bits (2791), Expect = 0.000e+0
Identity = 532/532 (100.00%), Postives = 532/532 (100.00%), Query Frame = 0
Query:    1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPAFAAARGGGGEGEGSSMARGLAQVENEPFLPFDAAAGEAGSGFVCKRIPISLLPGSPLSPLWAWRGETSTSYSDRACDAMRCLVSLQEVLMREERYFYECAVRANLRNNSQGGAGRGARDVSIRESSQGRIGAVHALHNAAIYSRALSSLLEESALPLANTLESVLLNLRREVRRVRRSTEGLEGDLPSERAPPTERDEEGEARGGNGGEMMDVEGPYQQASLLGGNTARKDKAGASSSPPPPSPYSASILASSRPKILRRAAEGSFMQSLLQEEGLRGEVRVSLVREYPSGGGIDGNISGFGEWALEVGKLRGRLTRLYESGGNMMSFGLAGARKGCEVQNERIVQLLGSDDLVSFWCRRVKPIVCPTATIYEQASPR 532
            MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPAFAAARGGGGEGEGSSMARGLAQVENEPFLPFDAAAGEAGSGFVCKRIPISLLPGSPLSPLWAWRGETSTSYSDRACDAMRCLVSLQEVLMREERYFYECAVRANLRNNSQGGAGRGARDVSIRESSQGRIGAVHALHNAAIYSRALSSLLEESALPLANTLESVLLNLRREVRRVRRSTEGLEGDLPSERAPPTERDEEGEARGGNGGEMMDVEGPYQQASLLGGNTARKDKAGASSSPPPPSPYSASILASSRPKILRRAAEGSFMQSLLQEEGLRGEVRVSLVREYPSGGGIDGNISGFGEWALEVGKLRGRLTRLYESGGNMMSFGLAGARKGCEVQNERIVQLLGSDDLVSFWCRRVKPIVCPTATIYEQASPR
Sbjct:    1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPAFAAARGGGGEGEGSSMARGLAQVENEPFLPFDAAAGEAGSGFVCKRIPISLLPGSPLSPLWAWRGETSTSYSDRACDAMRCLVSLQEVLMREERYFYECAVRANLRNNSQGGAGRGARDVSIRESSQGRIGAVHALHNAAIYSRALSSLLEESALPLANTLESVLLNLRREVRRVRRSTEGLEGDLPSERAPPTERDEEGEARGGNGGEMMDVEGPYQQASLLGGNTARKDKAGASSSPPPPSPYSASILASSRPKILRRAAEGSFMQSLLQEEGLRGEVRVSLVREYPSGGGIDGNISGFGEWALEVGKLRGRLTRLYESGGNMMSFGLAGARKGCEVQNERIVQLLGSDDLVSFWCRRVKPIVCPTATIYEQASPR 532          
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|159488008|ref|XP_001702014.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158271471|gb|EDO97289.1| predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 153.295 bits (386), Expect = 6.467e-39
Identity = 79/162 (48.77%), Postives = 99/162 (61.11%), Query Frame = 0
Query:    1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPAFAAARGGG 162
            MSLERV +T+E L   +A A STE +EVM +LLG  + DP  G      +       RTDRRKDRVE   EQ+A     A  L   +G  +R++GW+HSHPHITVLPSHVD+RTQA YQ +D GF GLI + F  D   ++  V LTAFQ++P       GG
Sbjct:    1 MSLERVEVTNEVLLAVLAHAHSTESEEVMGLLLGD-VTDPVRGGGAVCRISLAFPQIRTDRRKDRVETSPEQMARCSAHAERLSRETGSRVRVVGWYHSHPHITVLPSHVDVRTQAMYQLLDPGFVGLIVSAFNRDAATEAATVQLTAFQALPDVDPQAAGG 161          
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|926637874|ref|XP_013784932.1| (PREDICTED: lys-63-specific deubiquitinase BRCC36-like isoform X1 [Limulus polyphemus])

HSP 1 Score: 150.214 bits (378), Expect = 6.181e-38
Identity = 105/341 (30.79%), Postives = 159/341 (46.63%), Query Frame = 0
Query:    1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPAFAAARGGGGEGEGSSMARGLAQVENEPFLPFDAAAGEAGSGFVCKRIPISLLPGSPLS-PLWAWRGETSTSYSDRACDAMRCLVSLQEVLMREERYFYECAVRANLRNNSQGGAGRGARDVSIRESSQGRIGAVHALHNAAIYSRALSSLLEESALPLANTLESVLLNLRREVRRVRRSTEGLEGDL 340
            M+   V+++ +    C+  ALSTER+EVM +L+G    D     H+ A    VI++ R+D+RKDRVE+  EQL++A   A  L    G+ +R++GW+HSHPHITV PSHVD++TQA YQ MD GF GLI +VF ++   + GR+ +T FQS+           EGE     R                            IP+ ++P   LS P                   +  LV L ++L +EE   Y    + +                         +  +  LHN A+Y+++L  + E    PL   LES L   +R++  +++  E LE +L
Sbjct:    1 MATSCVKLSADVYLVCLNHALSTEREEVMGLLIGE--IDQKRVSHISA----VIMLRRSDKRKDRVEISPEQLSDASTQAERLARTCGRPVRVLGWYHSHPHITVWPSHVDVQTQAMYQMMDDGFVGLIFSVFSEEASTKQGRIQVTCFQSI-------NQSPEGEPPQYMR--------------------------LEIPLHIVPSPRLSGP------------------CLETLVQLPQILCQEELEAYSWTHQIS------------------------DLDLLTRLHNGAVYTKSLCHIAEVVGGPLLQVLESRLSENKRKMMLLQKEREQLEQEL 260          
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|1042304449|ref|XP_017348616.1| (PREDICTED: lys-63-specific deubiquitinase BRCC36 isoform X2 [Ictalurus punctatus])

HSP 1 Score: 145.976 bits (367), Expect = 4.869e-37
Identity = 72/154 (46.75%), Postives = 100/154 (64.94%), Query Frame = 0
Query:    1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPA 154
            M++  V +  +A   C+  ALSTE++EVM + +G    D     H+ +    VI++ R+D+RKDRVE+  EQL+ A   A  L   +G+ +R++GW+HSHPHITV PSHVD+RTQA YQ MD GF GLI + F +D   ++GRV  T FQSV A
Sbjct:    1 MAISAVHLESDAFLVCMNHALSTEKEEVMGLCIGE--VDTNRIVHIHS----VIILRRSDKRKDRVEISPEQLSAASTEAERLAEMTGRPVRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQA 148          
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|62858255|ref|NP_001016457.1| (lys-63-specific deubiquitinase BRCC36 [Xenopus tropicalis] >gi|82228613|sp|Q4VA72.1|BRCC3_XENTR RecName: Full=Lys-63-specific deubiquitinase BRCC36; AltName: Full=BRCA1-A complex subunit BRCC36; AltName: Full=BRCA1/BRCA2-containing complex subunit 3; AltName: Full=BRCA1/BRCA2-containing complex subunit 36; AltName: Full=BRISC complex subunit BRCC36 >gi|66792574|gb|AAH96514.1| c6.1a protein [Xenopus tropicalis] >gi|89272829|emb|CAJ82080.1| chromosome X open reading frame 53 [Xenopus tropicalis] >gi|1043412109|gb|OCA24742.1| hypothetical protein XENTR_v90020196mg [Xenopus tropicalis])

HSP 1 Score: 147.132 bits (370), Expect = 5.200e-37
Identity = 72/154 (46.75%), Postives = 101/154 (65.58%), Query Frame = 0
Query:    1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPA 154
            M+++ V I  +A   C+  +LSTER+EVM + +G    D     H+ +    VI++ R+D+RKDRVE+  EQL+ A   A  L   +G+ +R++GW+HSHPHITV PSHVD+RTQA YQ MD GF GLI + F +D   ++GR+  T FQSV A
Sbjct:    1 MAVQAVHIQGDAFLVCVTHSLSTEREEVMGLCIGE--VDTQKVVHIHS----VIILRRSDKRKDRVEISPEQLSAATTEADRLAEITGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDVGFVGLIFSCFIEDKNTKTGRILYTCFQSVQA 148          
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|147905921|ref|NP_001087827.1| (lys-63-specific deubiquitinase BRCC36 [Xenopus laevis] >gi|82181046|sp|Q66GV6.1|BRCC3_XENLA RecName: Full=Lys-63-specific deubiquitinase BRCC36; AltName: Full=BRCA1-A complex subunit BRCC36; AltName: Full=BRCA1/BRCA2-containing complex subunit 3; AltName: Full=BRCA1/BRCA2-containing complex subunit 36; AltName: Full=BRISC complex subunit BRCC36 >gi|51859248|gb|AAH82208.1| MGC99130 protein [Xenopus laevis] >gi|1050365063|gb|OCT67266.1| hypothetical protein XELAEV_18038550mg [Xenopus laevis])

HSP 1 Score: 147.132 bits (370), Expect = 5.362e-37
Identity = 72/154 (46.75%), Postives = 102/154 (66.23%), Query Frame = 0
Query:    1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPA 154
            M+++ V I  +A   C+  +LSTER+EVM + +G    D     H+ +    VI++ R+D+RKDRVE+  EQL+ A   A  L + +G+ +R++GW+HSHPHITV PSHVD+RTQA YQ MD GF GLI + F +D   ++GR+  T FQSV A
Sbjct:    1 MAVQAVHIQGDAFLVCVTHSLSTEREEVMGLCIGE--VDTQKLVHIHS----VIILRRSDKRKDRVEISPEQLSAATIEADRLADITGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDVGFVGLIFSCFIEDKNTKTGRILYTCFQSVQA 148          
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|686615438|ref|XP_009284587.1| (PREDICTED: lys-63-specific deubiquitinase BRCC36 [Aptenodytes forsteri])

HSP 1 Score: 145.976 bits (367), Expect = 1.403e-36
Identity = 71/154 (46.10%), Postives = 103/154 (66.88%), Query Frame = 0
Query:    1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPA 154
            M+++ V +  +AL  C+  ALSTE++EVM + +G    D +   H+ +    VI++ R+D+RKDRVE+  EQL+ A   A  L   +G+ +R++GW+HSHPHITV PSHVD+RTQA YQ MD GF GLI + F +D   ++GR+  T FQS+ A
Sbjct:    1 MAVQAVHLEADALLVCLNHALSTEKEEVMGLCIGE--VDTSRIVHIHS----VIILRRSDKRKDRVEISPEQLSAASTEAERLAEMTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRILYTCFQSIQA 148          
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|1174649878|ref|XP_004075192.2| (lys-63-specific deubiquitinase BRCC36 [Oryzias latipes])

HSP 1 Score: 147.517 bits (371), Expect = 1.524e-36
Identity = 103/343 (30.03%), Postives = 156/343 (45.48%), Query Frame = 0
Query:    1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVH---VIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPAFAAARGGGGEGEGSSMARGLAQVENEPFLPFDAAAGEAGSGFVCKRIPISLLPGSPLSPLWAWRGETSTSYSDRACDAMRCLVSLQEVLMREERYFYECAVRANLRNNSQGGAGRGARDVSIRESSQGRIGAVHALHNAAIYSRALSSLLEESALPLANTLESVLLNLRREVRRVRRSTEGLEGDL 340
            M++  V +  +A   C+  ALSTE++EVM + +G         E  EA +VH   VI++ R+D+RKDRVE+  EQL+ A   A  L + +G+ +R++GW+HSHPHITV PSHVD+RTQA YQ +D GF GLI + F +D   ++GRV  T FQS                                    A  + GS +    IP+ ++P   +                R C  +   V L  +L +EE+  Y                         R      +  V  +HN +++++ L S +   + PL   LE  L + RR +  ++R  E L  +L
Sbjct:   54 MAVSSVHLESDAFLVCMNHALSTEKEEVMGLCIG---------EVEEARIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLADLTGKPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMLDQGFVGLIFSCFIEDKNTRTGRVLYTCFQS------------------------------------AQAQKGSEYERVEIPVHVVPREAIG---------------RVC--LESAVELPRILCQEEQDTYR------------------------RIHGLAHLDPVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEHNRRSIADLQREKEALLREL 310          
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|620980041|ref|XP_007669753.1| (PREDICTED: lys-63-specific deubiquitinase BRCC36 isoform X2 [Ornithorhynchus anatinus])

HSP 1 Score: 144.436 bits (363), Expect = 2.400e-36
Identity = 70/154 (45.45%), Postives = 102/154 (66.23%), Query Frame = 0
Query:    1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPA 154
            M+++ V +  +A   C+  ALSTE++EVM + +G    D +   H+ +    VI++ R+D+RKDRVE+  EQL+ A   A  L   +G+ +R++GW+HSHPHITV PSHVD+RTQA YQ MD GF GLI + F +D   ++GR+  T FQS+ A
Sbjct:    1 MAVQAVHLEADAFLVCLNHALSTEKEEVMGLCIGE--VDTSRIVHIHS----VIILRRSDKRKDRVEISPEQLSAASTEAERLAEITGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRILYTCFQSIQA 148          
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|1072246130|ref|XP_018432497.1| (PREDICTED: lys-63-specific deubiquitinase BRCC36 [Nanorana parkeri])

HSP 1 Score: 145.591 bits (366), Expect = 2.461e-36
Identity = 72/154 (46.75%), Postives = 102/154 (66.23%), Query Frame = 0
Query:    1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPA 154
            M+++ V +  +A   C+A +LSTER+EVM + +G    D     H+ +    VI++ R+D+RKDRVE+  EQL+ A   A  L   +G+ +R++GW+HSHPHITV PSHVD+RTQA YQ MD GF GLI + F +D   ++GR+  T FQSV A
Sbjct:    1 MAVQAVHLEGDAFLVCVAHSLSTEREEVMGLCIGE--VDVQRVVHIHS----VIILRRSDKRKDRVEISPEQLSAAAVEADRLTEITGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDIGFVGLIFSCFIEDKNTKTGRILYTCFQSVQA 148          
The following BLAST results are available for this feature:
BLAST of EWM21939.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102286|gb|EWM21939.1|0.000e+0100.00brca1 brca2-containing complex subunit 3 [Nannochl... [more]
gi|159488008|ref|XP_001702014.1|6.467e-3948.77predicted protein [Chlamydomonas reinhardtii] >gi|... [more]
gi|926637874|ref|XP_013784932.1|6.181e-3830.79PREDICTED: lys-63-specific deubiquitinase BRCC36-l... [more]
gi|1042304449|ref|XP_017348616.1|4.869e-3746.75PREDICTED: lys-63-specific deubiquitinase BRCC36 i... [more]
gi|62858255|ref|NP_001016457.1|5.200e-3746.75lys-63-specific deubiquitinase BRCC36 [Xenopus tro... [more]
gi|147905921|ref|NP_001087827.1|5.362e-3746.75lys-63-specific deubiquitinase BRCC36 [Xenopus lae... [more]
gi|686615438|ref|XP_009284587.1|1.403e-3646.10PREDICTED: lys-63-specific deubiquitinase BRCC36 [... [more]
gi|1174649878|ref|XP_004075192.2|1.524e-3630.03lys-63-specific deubiquitinase BRCC36 [Oryzias lat... [more]
gi|620980041|ref|XP_007669753.1|2.400e-3645.45PREDICTED: lys-63-specific deubiquitinase BRCC36 i... [more]
gi|1072246130|ref|XP_018432497.1|2.461e-3646.75PREDICTED: lys-63-specific deubiquitinase BRCC36 [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8770rna8770Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications