EWM21939.1, cds8740 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|585102286|gb|EWM21939.1| (brca1 brca2-containing complex subunit 3 [Nannochloropsis gaditana]) HSP 1 Score: 1079.7 bits (2791), Expect = 0.000e+0 Identity = 532/532 (100.00%), Postives = 532/532 (100.00%), Query Frame = 0
Query: 1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPAFAAARGGGGEGEGSSMARGLAQVENEPFLPFDAAAGEAGSGFVCKRIPISLLPGSPLSPLWAWRGETSTSYSDRACDAMRCLVSLQEVLMREERYFYECAVRANLRNNSQGGAGRGARDVSIRESSQGRIGAVHALHNAAIYSRALSSLLEESALPLANTLESVLLNLRREVRRVRRSTEGLEGDLPSERAPPTERDEEGEARGGNGGEMMDVEGPYQQASLLGGNTARKDKAGASSSPPPPSPYSASILASSRPKILRRAAEGSFMQSLLQEEGLRGEVRVSLVREYPSGGGIDGNISGFGEWALEVGKLRGRLTRLYESGGNMMSFGLAGARKGCEVQNERIVQLLGSDDLVSFWCRRVKPIVCPTATIYEQASPR 532
MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPAFAAARGGGGEGEGSSMARGLAQVENEPFLPFDAAAGEAGSGFVCKRIPISLLPGSPLSPLWAWRGETSTSYSDRACDAMRCLVSLQEVLMREERYFYECAVRANLRNNSQGGAGRGARDVSIRESSQGRIGAVHALHNAAIYSRALSSLLEESALPLANTLESVLLNLRREVRRVRRSTEGLEGDLPSERAPPTERDEEGEARGGNGGEMMDVEGPYQQASLLGGNTARKDKAGASSSPPPPSPYSASILASSRPKILRRAAEGSFMQSLLQEEGLRGEVRVSLVREYPSGGGIDGNISGFGEWALEVGKLRGRLTRLYESGGNMMSFGLAGARKGCEVQNERIVQLLGSDDLVSFWCRRVKPIVCPTATIYEQASPR
Sbjct: 1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPAFAAARGGGGEGEGSSMARGLAQVENEPFLPFDAAAGEAGSGFVCKRIPISLLPGSPLSPLWAWRGETSTSYSDRACDAMRCLVSLQEVLMREERYFYECAVRANLRNNSQGGAGRGARDVSIRESSQGRIGAVHALHNAAIYSRALSSLLEESALPLANTLESVLLNLRREVRRVRRSTEGLEGDLPSERAPPTERDEEGEARGGNGGEMMDVEGPYQQASLLGGNTARKDKAGASSSPPPPSPYSASILASSRPKILRRAAEGSFMQSLLQEEGLRGEVRVSLVREYPSGGGIDGNISGFGEWALEVGKLRGRLTRLYESGGNMMSFGLAGARKGCEVQNERIVQLLGSDDLVSFWCRRVKPIVCPTATIYEQASPR 532
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|159488008|ref|XP_001702014.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158271471|gb|EDO97289.1| predicted protein [Chlamydomonas reinhardtii]) HSP 1 Score: 153.295 bits (386), Expect = 6.467e-39 Identity = 79/162 (48.77%), Postives = 99/162 (61.11%), Query Frame = 0
Query: 1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPAFAAARGGG 162
MSLERV +T+E L +A A STE +EVM +LLG + DP G + RTDRRKDRVE EQ+A A L +G +R++GW+HSHPHITVLPSHVD+RTQA YQ +D GF GLI + F D ++ V LTAFQ++P GG
Sbjct: 1 MSLERVEVTNEVLLAVLAHAHSTESEEVMGLLLGD-VTDPVRGGGAVCRISLAFPQIRTDRRKDRVETSPEQMARCSAHAERLSRETGSRVRVVGWYHSHPHITVLPSHVDVRTQAMYQLLDPGFVGLIVSAFNRDAATEAATVQLTAFQALPDVDPQAAGG 161
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|926637874|ref|XP_013784932.1| (PREDICTED: lys-63-specific deubiquitinase BRCC36-like isoform X1 [Limulus polyphemus]) HSP 1 Score: 150.214 bits (378), Expect = 6.181e-38 Identity = 105/341 (30.79%), Postives = 159/341 (46.63%), Query Frame = 0
Query: 1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPAFAAARGGGGEGEGSSMARGLAQVENEPFLPFDAAAGEAGSGFVCKRIPISLLPGSPLS-PLWAWRGETSTSYSDRACDAMRCLVSLQEVLMREERYFYECAVRANLRNNSQGGAGRGARDVSIRESSQGRIGAVHALHNAAIYSRALSSLLEESALPLANTLESVLLNLRREVRRVRRSTEGLEGDL 340
M+ V+++ + C+ ALSTER+EVM +L+G D H+ A VI++ R+D+RKDRVE+ EQL++A A L G+ +R++GW+HSHPHITV PSHVD++TQA YQ MD GF GLI +VF ++ + GR+ +T FQS+ EGE R IP+ ++P LS P + LV L ++L +EE Y + + + + LHN A+Y+++L + E PL LES L +R++ +++ E LE +L
Sbjct: 1 MATSCVKLSADVYLVCLNHALSTEREEVMGLLIGE--IDQKRVSHISA----VIMLRRSDKRKDRVEISPEQLSDASTQAERLARTCGRPVRVLGWYHSHPHITVWPSHVDVQTQAMYQMMDDGFVGLIFSVFSEEASTKQGRIQVTCFQSI-------NQSPEGEPPQYMR--------------------------LEIPLHIVPSPRLSGP------------------CLETLVQLPQILCQEELEAYSWTHQIS------------------------DLDLLTRLHNGAVYTKSLCHIAEVVGGPLLQVLESRLSENKRKMMLLQKEREQLEQEL 260
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|1042304449|ref|XP_017348616.1| (PREDICTED: lys-63-specific deubiquitinase BRCC36 isoform X2 [Ictalurus punctatus]) HSP 1 Score: 145.976 bits (367), Expect = 4.869e-37 Identity = 72/154 (46.75%), Postives = 100/154 (64.94%), Query Frame = 0
Query: 1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPA 154
M++ V + +A C+ ALSTE++EVM + +G D H+ + VI++ R+D+RKDRVE+ EQL+ A A L +G+ +R++GW+HSHPHITV PSHVD+RTQA YQ MD GF GLI + F +D ++GRV T FQSV A
Sbjct: 1 MAISAVHLESDAFLVCMNHALSTEKEEVMGLCIGE--VDTNRIVHIHS----VIILRRSDKRKDRVEISPEQLSAASTEAERLAEMTGRPVRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQA 148
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|62858255|ref|NP_001016457.1| (lys-63-specific deubiquitinase BRCC36 [Xenopus tropicalis] >gi|82228613|sp|Q4VA72.1|BRCC3_XENTR RecName: Full=Lys-63-specific deubiquitinase BRCC36; AltName: Full=BRCA1-A complex subunit BRCC36; AltName: Full=BRCA1/BRCA2-containing complex subunit 3; AltName: Full=BRCA1/BRCA2-containing complex subunit 36; AltName: Full=BRISC complex subunit BRCC36 >gi|66792574|gb|AAH96514.1| c6.1a protein [Xenopus tropicalis] >gi|89272829|emb|CAJ82080.1| chromosome X open reading frame 53 [Xenopus tropicalis] >gi|1043412109|gb|OCA24742.1| hypothetical protein XENTR_v90020196mg [Xenopus tropicalis]) HSP 1 Score: 147.132 bits (370), Expect = 5.200e-37 Identity = 72/154 (46.75%), Postives = 101/154 (65.58%), Query Frame = 0
Query: 1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPA 154
M+++ V I +A C+ +LSTER+EVM + +G D H+ + VI++ R+D+RKDRVE+ EQL+ A A L +G+ +R++GW+HSHPHITV PSHVD+RTQA YQ MD GF GLI + F +D ++GR+ T FQSV A
Sbjct: 1 MAVQAVHIQGDAFLVCVTHSLSTEREEVMGLCIGE--VDTQKVVHIHS----VIILRRSDKRKDRVEISPEQLSAATTEADRLAEITGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDVGFVGLIFSCFIEDKNTKTGRILYTCFQSVQA 148
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|147905921|ref|NP_001087827.1| (lys-63-specific deubiquitinase BRCC36 [Xenopus laevis] >gi|82181046|sp|Q66GV6.1|BRCC3_XENLA RecName: Full=Lys-63-specific deubiquitinase BRCC36; AltName: Full=BRCA1-A complex subunit BRCC36; AltName: Full=BRCA1/BRCA2-containing complex subunit 3; AltName: Full=BRCA1/BRCA2-containing complex subunit 36; AltName: Full=BRISC complex subunit BRCC36 >gi|51859248|gb|AAH82208.1| MGC99130 protein [Xenopus laevis] >gi|1050365063|gb|OCT67266.1| hypothetical protein XELAEV_18038550mg [Xenopus laevis]) HSP 1 Score: 147.132 bits (370), Expect = 5.362e-37 Identity = 72/154 (46.75%), Postives = 102/154 (66.23%), Query Frame = 0
Query: 1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPA 154
M+++ V I +A C+ +LSTER+EVM + +G D H+ + VI++ R+D+RKDRVE+ EQL+ A A L + +G+ +R++GW+HSHPHITV PSHVD+RTQA YQ MD GF GLI + F +D ++GR+ T FQSV A
Sbjct: 1 MAVQAVHIQGDAFLVCVTHSLSTEREEVMGLCIGE--VDTQKLVHIHS----VIILRRSDKRKDRVEISPEQLSAATIEADRLADITGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDVGFVGLIFSCFIEDKNTKTGRILYTCFQSVQA 148
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|686615438|ref|XP_009284587.1| (PREDICTED: lys-63-specific deubiquitinase BRCC36 [Aptenodytes forsteri]) HSP 1 Score: 145.976 bits (367), Expect = 1.403e-36 Identity = 71/154 (46.10%), Postives = 103/154 (66.88%), Query Frame = 0
Query: 1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPA 154
M+++ V + +AL C+ ALSTE++EVM + +G D + H+ + VI++ R+D+RKDRVE+ EQL+ A A L +G+ +R++GW+HSHPHITV PSHVD+RTQA YQ MD GF GLI + F +D ++GR+ T FQS+ A
Sbjct: 1 MAVQAVHLEADALLVCLNHALSTEKEEVMGLCIGE--VDTSRIVHIHS----VIILRRSDKRKDRVEISPEQLSAASTEAERLAEMTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRILYTCFQSIQA 148
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|1174649878|ref|XP_004075192.2| (lys-63-specific deubiquitinase BRCC36 [Oryzias latipes]) HSP 1 Score: 147.517 bits (371), Expect = 1.524e-36 Identity = 103/343 (30.03%), Postives = 156/343 (45.48%), Query Frame = 0
Query: 1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVH---VIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPAFAAARGGGGEGEGSSMARGLAQVENEPFLPFDAAAGEAGSGFVCKRIPISLLPGSPLSPLWAWRGETSTSYSDRACDAMRCLVSLQEVLMREERYFYECAVRANLRNNSQGGAGRGARDVSIRESSQGRIGAVHALHNAAIYSRALSSLLEESALPLANTLESVLLNLRREVRRVRRSTEGLEGDL 340
M++ V + +A C+ ALSTE++EVM + +G E EA +VH VI++ R+D+RKDRVE+ EQL+ A A L + +G+ +R++GW+HSHPHITV PSHVD+RTQA YQ +D GF GLI + F +D ++GRV T FQS A + GS + IP+ ++P + R C + V L +L +EE+ Y R + V +HN +++++ L S + + PL LE L + RR + ++R E L +L
Sbjct: 54 MAVSSVHLESDAFLVCMNHALSTEKEEVMGLCIG---------EVEEARIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLADLTGKPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMLDQGFVGLIFSCFIEDKNTRTGRVLYTCFQS------------------------------------AQAQKGSEYERVEIPVHVVPREAIG---------------RVC--LESAVELPRILCQEEQDTYR------------------------RIHGLAHLDPVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEHNRRSIADLQREKEALLREL 310
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|620980041|ref|XP_007669753.1| (PREDICTED: lys-63-specific deubiquitinase BRCC36 isoform X2 [Ornithorhynchus anatinus]) HSP 1 Score: 144.436 bits (363), Expect = 2.400e-36 Identity = 70/154 (45.45%), Postives = 102/154 (66.23%), Query Frame = 0
Query: 1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPA 154
M+++ V + +A C+ ALSTE++EVM + +G D + H+ + VI++ R+D+RKDRVE+ EQL+ A A L +G+ +R++GW+HSHPHITV PSHVD+RTQA YQ MD GF GLI + F +D ++GR+ T FQS+ A
Sbjct: 1 MAVQAVHLEADAFLVCLNHALSTEKEEVMGLCIGE--VDTSRIVHIHS----VIILRRSDKRKDRVEISPEQLSAASTEAERLAEITGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRILYTCFQSIQA 148
BLAST of EWM21939.1 vs. NCBI_GenBank
Match: gi|1072246130|ref|XP_018432497.1| (PREDICTED: lys-63-specific deubiquitinase BRCC36 [Nanorana parkeri]) HSP 1 Score: 145.591 bits (366), Expect = 2.461e-36 Identity = 72/154 (46.75%), Postives = 102/154 (66.23%), Query Frame = 0
Query: 1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPA 154
M+++ V + +A C+A +LSTER+EVM + +G D H+ + VI++ R+D+RKDRVE+ EQL+ A A L +G+ +R++GW+HSHPHITV PSHVD+RTQA YQ MD GF GLI + F +D ++GR+ T FQSV A
Sbjct: 1 MAVQAVHLEGDAFLVCVAHSLSTEREEVMGLCIGE--VDVQRVVHIHS----VIILRRSDKRKDRVEISPEQLSAAAVEADRLTEITGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDIGFVGLIFSCFIEDKNTKTGRILYTCFQSVQA 148 The following BLAST results are available for this feature:
BLAST of EWM21939.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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