EWM21955.1, cds8718 (CDS) Nannochloropsis gaditana

Overview
NameEWM21955.1
Unique Namecds8718
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:68635..69042 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21955.1
ProductTLDc
Orig transcript idgnl|cribi|Naga_102444g1.5585.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:68635..69042 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR006571TLDc_dom
Homology
BLAST of EWM21955.1 vs. NCBI_GenBank
Match: gi|585102308|gb|EWM21955.1| (TLDc [Nannochloropsis gaditana])

HSP 1 Score: 270.011 bits (689), Expect = 1.525e-91
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query:    1 MYLNLKGFSLPHGLGVGGSVDTGFRLWIPESLEGCVAGDRDASFAWGPLAGKTGGGKGGREGEFEMEGLEVWGVGGEEAIEAACNAQGEARQMMADNIARARRVDKSKFVDNDFDKEFLLGKTFGQGKRERRGRD 135
            MYLNLKGFSLPHGLGVGGSVDTGFRLWIPESLEGCVAGDRDASFAWGPLAGKTGGGKGGREGEFEMEGLEVWGVGGEEAIEAACNAQGEARQMMADNIARARRVDKSKFVDNDFDKEFLLGKTFGQGKRERRGRD
Sbjct:    1 MYLNLKGFSLPHGLGVGGSVDTGFRLWIPESLEGCVAGDRDASFAWGPLAGKTGGGKGGREGEFEMEGLEVWGVGGEEAIEAACNAQGEARQMMADNIARARRVDKSKFVDNDFDKEFLLGKTFGQGKRERRGRD 135          
BLAST of EWM21955.1 vs. NCBI_GenBank
Match: gi|325180354|emb|CCA14756.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 114.005 bits (284), Expect = 2.900e-27
Identity = 63/133 (47.37%), Postives = 81/133 (60.90%), Query Frame = 0
Query:    1 MYLNLKGFSLPHGLGVGGSVDTGFRLWIPESL-EGCVAGDRDASFAWGPLAGKTGGGKGGREGEFEMEGLEVWGVGGEEAIEAACNAQGEARQMMADNIARARRVDKSKFVDNDFDKEFLLGKTFGQGKRERR 132
            MYLN KGFSLP GLG+GG + T FR+++ E   E C +  R  S+  GPL+ +T         +F +  LEVWG GGEE+       Q   RQ  AD IA AR+VDK++F+ NDFDKE  LG+TFG G  + R
Sbjct:  318 MYLNTKGFSLPRGLGLGGDL-TEFRVYLNEDFDENCYSTMRCLSYESGPLSSQT---------QFSIASLEVWGCGGEESKLD----QKAHRQDTADMIAHARKVDKAQFIGNDFDKEMFLGRTFGHGANQAR 436          
BLAST of EWM21955.1 vs. NCBI_GenBank
Match: gi|635362296|emb|CCI48958.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 112.849 bits (281), Expect = 9.127e-27
Identity = 62/133 (46.62%), Postives = 79/133 (59.40%), Query Frame = 0
Query:    1 MYLNLKGFSLPHGLGVGGSVDTGFRLWIPESL-EGCVAGDRDASFAWGPLAGKTGGGKGGREGEFEMEGLEVWGVGGEEAIEAACNAQGEARQMMADNIARARRVDKSKFVDNDFDKEFLLGKTFGQGKRERR 132
            MYLN KGFSLP GLGVGG + T FR+++ E   E C    R  S+  GPL+ +           F +  LE+WG GGE+++      Q   RQ  AD IA AR+VDK++FV NDFDKE  LG+TFG G  + R
Sbjct:  321 MYLNTKGFSLPRGLGVGGDL-TEFRMFLSEDFDENCYTTTRCLSYEPGPLSSRK---------RFSIALLEIWGCGGEKSMLK----QKAHRQDTADMIAHARKVDKAQFVGNDFDKEMFLGRTFGHGTNQAR 439          
BLAST of EWM21955.1 vs. NCBI_GenBank
Match: gi|970653089|gb|KUF91628.1| (hypothetical protein AM588_10003200 [Phytophthora nicotianae])

HSP 1 Score: 101.679 bits (252), Expect = 7.723e-24
Identity = 64/136 (47.06%), Postives = 80/136 (58.82%), Query Frame = 0
Query:    1 MYLNLKGFSLPHGLGVGGSVDTGFRLWIPESL-EGCVAGDRDASFAWGPLAGKTGGGKGGREGEFEMEGLEVWGVGGEEAIEAACNAQGEARQMMADNIARARRVDKSKFVDNDFDKEFLLGKTFGQGKRERRGRD 135
            MYLN KGF+LP GLG+GGS D  FRL++ E L E      +  SF  G L+            +F ++ +EVWG GGEE+  +    Q   RQ  AD I RAR+VDK++FV NDFDKE  LGKTFG G  + R  D
Sbjct:  132 MYLNSKGFALPRGLGMGGSTDK-FRLFLSEDLDENSYTTAKCLSFEPGRLSSSE---------QFVIDAMEVWGCGGEESELS----QKAHRQETADLINRARKVDKAQFVGNDFDKEMFLGKTFGHGTDKARIAD 253          
BLAST of EWM21955.1 vs. NCBI_GenBank
Match: gi|970640091|gb|KUF82813.1| (TLD domain-containing protein 1 [Phytophthora nicotianae])

HSP 1 Score: 102.064 bits (253), Expect = 8.268e-24
Identity = 64/136 (47.06%), Postives = 80/136 (58.82%), Query Frame = 0
Query:    1 MYLNLKGFSLPHGLGVGGSVDTGFRLWIPESL-EGCVAGDRDASFAWGPLAGKTGGGKGGREGEFEMEGLEVWGVGGEEAIEAACNAQGEARQMMADNIARARRVDKSKFVDNDFDKEFLLGKTFGQGKRERRGRD 135
            MYLN KGF+LP GLG+GGS D  FRL++ E L E      +  SF  G L+            +F ++ +EVWG GGEE+  +    Q   RQ  AD I RAR+VDK++FV NDFDKE  LGKTFG G  + R  D
Sbjct:  143 MYLNSKGFALPRGLGMGGSTDK-FRLFLSEDLDENSYTTAKCLSFEPGRLSSSE---------QFVIDAMEVWGCGGEESELS----QKAHRQETADLINRARKVDKAQFVGNDFDKEMFLGKTFGHGTDKARIAD 264          
BLAST of EWM21955.1 vs. NCBI_GenBank
Match: gi|970624890|gb|KUF72812.1| (TLD domain-containing protein 1 [Phytophthora nicotianae])

HSP 1 Score: 102.064 bits (253), Expect = 4.461e-23
Identity = 64/136 (47.06%), Postives = 80/136 (58.82%), Query Frame = 0
Query:    1 MYLNLKGFSLPHGLGVGGSVDTGFRLWIPESL-EGCVAGDRDASFAWGPLAGKTGGGKGGREGEFEMEGLEVWGVGGEEAIEAACNAQGEARQMMADNIARARRVDKSKFVDNDFDKEFLLGKTFGQGKRERRGRD 135
            MYLN KGF+LP GLG+GGS D  FRL++ E L E      +  SF  G L+            +F ++ +EVWG GGEE+  +    Q   RQ  AD I RAR+VDK++FV NDFDKE  LGKTFG G  + R  D
Sbjct:  272 MYLNSKGFALPRGLGMGGSTDK-FRLFLSEDLDENSYTTAKCLSFEPGRLSSSE---------QFVIDAMEVWGCGGEESELS----QKAHRQETADLINRARKVDKAQFVGNDFDKEMFLGKTFGHGTDKARIAD 393          
BLAST of EWM21955.1 vs. NCBI_GenBank
Match: gi|568021849|gb|ETL95932.1| (hypothetical protein L917_06383 [Phytophthora parasitica])

HSP 1 Score: 102.449 bits (254), Expect = 6.510e-23
Identity = 64/136 (47.06%), Postives = 80/136 (58.82%), Query Frame = 0
Query:    1 MYLNLKGFSLPHGLGVGGSVDTGFRLWIPESL-EGCVAGDRDASFAWGPLAGKTGGGKGGREGEFEMEGLEVWGVGGEEAIEAACNAQGEARQMMADNIARARRVDKSKFVDNDFDKEFLLGKTFGQGKRERRGRD 135
            MYLN KGF+LP GLG+GGS D  FRL++ E L E      +  SF  G L+            +F ++ +EVWG GGEE+  +    Q   RQ  AD I RAR+VDK++FV NDFDKE  LGKTFG G  + R  D
Sbjct:  329 MYLNSKGFALPRGLGMGGSTDK-FRLFLSEDLDENSYTTAKCLSFEPGRLSSSE---------QFVIDAMEVWGCGGEESELS----QKAHRQETADLINRARKVDKAQFVGNDFDKEMFLGKTFGHGTDKARIAD 450          
BLAST of EWM21955.1 vs. NCBI_GenBank
Match: gi|567963861|gb|ETK89353.1| (hypothetical protein L915_06574 [Phytophthora parasitica] >gi|568052245|gb|ETM49126.1| hypothetical protein L914_06486 [Phytophthora parasitica] >gi|570330140|gb|ETO78088.1| hypothetical protein F444_06769 [Phytophthora parasitica P1976] >gi|570988887|gb|ETP47187.1| hypothetical protein F442_06737 [Phytophthora parasitica P10297])

HSP 1 Score: 102.064 bits (253), Expect = 6.642e-23
Identity = 64/136 (47.06%), Postives = 80/136 (58.82%), Query Frame = 0
Query:    1 MYLNLKGFSLPHGLGVGGSVDTGFRLWIPESL-EGCVAGDRDASFAWGPLAGKTGGGKGGREGEFEMEGLEVWGVGGEEAIEAACNAQGEARQMMADNIARARRVDKSKFVDNDFDKEFLLGKTFGQGKRERRGRD 135
            MYLN KGF+LP GLG+GGS D  FRL++ E L E      +  SF  G L+            +F ++ +EVWG GGEE+  +    Q   RQ  AD I RAR+VDK++FV NDFDKE  LGKTFG G  + R  D
Sbjct:  329 MYLNSKGFALPRGLGMGGSTDK-FRLFLSEDLDENSYTTAKCLSFEPGRLSSSE---------QFVIDAMEVWGCGGEESELS----QKAHRQETADLINRARKVDKAQFVGNDFDKEMFLGKTFGHGTDKARIAD 450          
BLAST of EWM21955.1 vs. NCBI_GenBank
Match: gi|675166841|ref|XP_008892305.1| (hypothetical protein PPTG_02791 [Phytophthora parasitica INRA-310] >gi|568108483|gb|ETN23107.1| hypothetical protein PPTG_02791 [Phytophthora parasitica INRA-310])

HSP 1 Score: 102.064 bits (253), Expect = 6.916e-23
Identity = 64/136 (47.06%), Postives = 80/136 (58.82%), Query Frame = 0
Query:    1 MYLNLKGFSLPHGLGVGGSVDTGFRLWIPESL-EGCVAGDRDASFAWGPLAGKTGGGKGGREGEFEMEGLEVWGVGGEEAIEAACNAQGEARQMMADNIARARRVDKSKFVDNDFDKEFLLGKTFGQGKRERRGRD 135
            MYLN KGF+LP GLG+GGS D  FRL++ E L E      +  SF  G L+            +F ++ +EVWG GGEE+  +    Q   RQ  AD I RAR+VDK++FV NDFDKE  LGKTFG G  + R  D
Sbjct:  329 MYLNSKGFALPRGLGMGGSTDK-FRLFLSEDLDENSYTTAKCLSFEPGRLSSSE---------QFVIDAMEVWGCGGEESELS----QKAHRQETADLINRARKVDKAQFVGNDFDKEMFLGKTFGHGTDKARIAD 450          
BLAST of EWM21955.1 vs. NCBI_GenBank
Match: gi|567992494|gb|ETL42684.1| (hypothetical protein L916_06513 [Phytophthora parasitica] >gi|570953871|gb|ETP19128.1| hypothetical protein F441_06705 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 102.064 bits (253), Expect = 7.128e-23
Identity = 64/136 (47.06%), Postives = 80/136 (58.82%), Query Frame = 0
Query:    1 MYLNLKGFSLPHGLGVGGSVDTGFRLWIPESL-EGCVAGDRDASFAWGPLAGKTGGGKGGREGEFEMEGLEVWGVGGEEAIEAACNAQGEARQMMADNIARARRVDKSKFVDNDFDKEFLLGKTFGQGKRERRGRD 135
            MYLN KGF+LP GLG+GGS D  FRL++ E L E      +  SF  G L+            +F ++ +EVWG GGEE+  +    Q   RQ  AD I RAR+VDK++FV NDFDKE  LGKTFG G  + R  D
Sbjct:  329 MYLNSKGFALPRGLGMGGSTDK-FRLFLSEDLDENSYTTAKCLSFEPGRLSSSE---------QFVIDAMEVWGCGGEESELS----QKAHRQETADLINRARKVDKAQFVGNDFDKEMFLGKTFGHGTDKARIAD 450          
The following BLAST results are available for this feature:
BLAST of EWM21955.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102308|gb|EWM21955.1|1.525e-91100.00TLDc [Nannochloropsis gaditana][more]
gi|325180354|emb|CCA14756.1|2.900e-2747.37conserved hypothetical protein [Albugo laibachii N... [more]
gi|635362296|emb|CCI48958.1|9.127e-2746.62unnamed protein product [Albugo candida][more]
gi|970653089|gb|KUF91628.1|7.723e-2447.06hypothetical protein AM588_10003200 [Phytophthora ... [more]
gi|970640091|gb|KUF82813.1|8.268e-2447.06TLD domain-containing protein 1 [Phytophthora nico... [more]
gi|970624890|gb|KUF72812.1|4.461e-2347.06TLD domain-containing protein 1 [Phytophthora nico... [more]
gi|568021849|gb|ETL95932.1|6.510e-2347.06hypothetical protein L917_06383 [Phytophthora para... [more]
gi|567963861|gb|ETK89353.1|6.642e-2347.06hypothetical protein L915_06574 [Phytophthora para... [more]
gi|675166841|ref|XP_008892305.1|6.916e-2347.06hypothetical protein PPTG_02791 [Phytophthora para... [more]
gi|567992494|gb|ETL42684.1|7.128e-2347.06hypothetical protein L916_06513 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8748rna8748Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications