rna8748, rna8748 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8748
Unique Name	rna8748
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1718
Alignment location	KK037250.1:68427..69042 +

Link to JBrowse

Properties


Property Name	Value
Product	TLDc
Orig transcript id	gnl\|cribi\|Naga_102444g1.5585.mrna
Orig protein id	gnl\|cribi\|Naga_102444g1.5585
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:68427..69042 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102444g1	gene8480	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8748	rna8748-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21955.1	cds8718	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:68427..69042+
coding sequence from alignment at KK037250.1:68427..69042+

mRNA sequence

>rna8748 ID=rna8748|Name=rna8748|organism=Nannochloropsis gaditana|type=mRNA|length=1718bp
CTTTCCAGTTTATAAAAGGCACCCGGGCCGGCACCGATCCTTTTTCTGAA
CGAGAAACAGTGTTTCAAATGCGTGGTGGATGCGGGTTGGGTTTTGGGTT
TGAGAGGATCCGTTGCATGGCCTTATGTGCCATTTTTTTTATTTTTCCCC
TGTAACCCTCCTTCCTGCTTGAGCTGTCTCGAGCGATTTGATTAAACCAC
CTCGCAGGATAATCGTACGCACACCTATGGCTTGCGCGTAGCAGTGTCTG
CATGCCCGTGGCTGCTCATGGACACTCAGACCTGAGGGTTCTGTCCGTCT
TTGTGGCGTATGTAGGCCTCATGTATTTGTACCCATGGTGTGACGGTTAT
CTGCTCGTTGTGTAGGAATGCCGCCAAGGGTGCGCGGGCCCAAAAATCCA
TCCGTAGGGACACGCGCACTCCTCTTTCGCTGCGTCAGCGCGTTCGAATG
ACTCCGGTCCTCCTCGACCCGCTTATAGCCCCCCCTTTCTGCCTCCCCAC
ATCCCTTCCCCTCTCCCCTCCTTCCTCCTCCTTTCCTCCCGGCCCATCCC
AGTCCATGGGCGCCACTGCCAGCGCACCTACAGCCAGCGGAGGGGACACT
CCCGTGCATCACACGGGTCACTTGTTCCAGGGATTCGGGCACCGGGCGAT
TCCCGTGAATACGGGGCCGTTCACAGACGCGGAGTACGCGCATTTGAAGC
AAGTCTTCGCCCGGTATGCCCGGGGCGGTGGAGAAGTGAAGAAGAAGCAG
GCAGGAAGGATGGGGATGGAAGGATTTGTGGCCCTCTTTGACGTGAGGAG
CGAGAAAAAATTCGCGCCCGCGTTGTACGCCGTGTTCAAGGACATGGCGG
TGACGGCCGCCGCCCTGGCATCCGCGTTGGGGGAGGAAGGGGTAGGAGGG
AGCGTAGCGGAGGAGAAGGAAGAGGACGGGCTGGGCTTCGAGGATTTCTT
CCGGGGCGTGTGCGCGTGTTCCCGGGCCTCGGACCGGTCTGTCCTGCAGG
TGGTTTATCGGGTCATGTGTCGCCTGGAACCCCCGGGGGCGGCCGGCGGG
AAGGAGGAGGCTCTCTGTCCCTACACTGGCCTCAAAGAGGTGATCCGTCT
CGCTTACCAATGCCACCAACTCGCCACCCAGCCTCTCTCCTCTTCCTCGT
CCTCCATGTCTTCGGCCACCACCTCCGCCGCCTCCTCCTCCTCCTCCTTG
GCCTCCGCCCCTCCCTCCCCTCCCTCCCCACCCCCCCCGTGGACCTGAGC
TTCGACACCTCCCTCTTCAGCCACCCCTACATCCGGGACCACGACATTCC
GCCCGCCCTCCCGTCCTTCCTCCCGCCCTCCCTCCCTTCCTCGAACCCTT
CATCCACCAGCCTCTCCTCGGAATTCGCCCTGTCGGAGGAAGAGGAGCCC
CCGCTCCCCTTCGACGAGTTCTATGCCTGGGCCACTGATTGCTTTCCCCT
CCTCTATCAGCCCTTCGCCGCCTTCTTCTACGCCTCCCTCTTCCTCCGGG
GCCCTTCCCCCACCGCCTTCGCCCTTCCCCCCTCCCTCCGCCTCGCCCTC
CCCCGCCTCCTCGCTCCTTCCTCCCTCCTCACGGCCCCACAATCCGTCTT
CGGCCTGGCCCTTGCCTCCCCTTCCTTGCAAGGGGCATGGACGCGGCTCT
ACACGAGCGACGAGAACGGCCTATCCTTCAACCGCATCTGTCACCACATC
CTCGGGTACCGCGGTACG

protein sequence of rna8748

>rna8748-protein ID=rna8748-protein|Name=rna8748|organism=Nannochloropsis gaditana|type=polypeptide|length=135bp
MYLNLKGFSLPHGLGVGGSVDTGFRLWIPESLEGCVAGDRDASFAWGPLA
GKTGGGKGGREGEFEMEGLEVWGVGGEEAIEAACNAQGEARQMMADNIAR
ARRVDKSKFVDNDFDKEFLLGKTFGQGKRERRGRD

mRNA from alignment at KK037250.1:68427..69042+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8748 ID=rna8748|Name=rna8748|organism=Nannochloropsis gaditana|type=mRNA|length=616bp|location=Sequence derived from alignment at KK037250.1:68427..69042+ (Nannochloropsis gaditana)
ccacggccccACCGTGCTCCTGGTCCGCGACACCACGGGCGCCGTCTTTG
GGTTCTTCACGACGGAAGCCTGGCGGGAGAGCAACGGCTTCTTCGGCTCT
TCGGagtgcttcctctttcgcctctgcccttccttcATCGAGTCCCGGcc
caaggcagggaggggagggctggacggagggcgggagggagggggagcgc
gGCACTTCATGTACCTGAATCTGAAGGGTTTCTCCTTGCCGCATGGCCTC
GGGGTGGGCGGCAGCGTGGATACAGGCTTCCGGCTCTGGATCCCCGAGAG
CCTGGAAGGCTGTGTGGCCGGCGACCGGGACGCTTCTTTCGCCTGGGGGC
CGTTGGCTGGCAAaacgggcggggggaagggcgggagggagggggagttc
GAGATGGAAGGGCTGGAGGtgtggggggtgggaggggaggaggcgatcga
GGCGGCCTGCAACGCCCAGGGAGAGGCTCGGCAGATGATGGCGGACAACA
TCGCCCGGGCCCGGCGCGTGGACAAGAGCAAGTTTGTCGATAACGACTTT
GACAAGGAATTCTTGCTGGGGAAGACGTTTGGGCAAGGGAAgcgggagcg
gagggggagggattga

Coding sequence (CDS) from alignment at KK037250.1:68427..69042+

>rna8748 ID=rna8748|Name=rna8748|organism=Nannochloropsis gaditana|type=CDS|length=408bp|location=Sequence derived from alignment at KK037250.1:68427..69042+ (Nannochloropsis gaditana)
ATGTACCTGAATCTGAAGGGTTTCTCCTTGCCGCATGGCCTCGGGGTGGG
CGGCAGCGTGGATACAGGCTTCCGGCTCTGGATCCCCGAGAGCCTGGAAG
GCTGTGTGGCCGGCGACCGGGACGCTTCTTTCGCCTGGGGGCCGTTGGCT
GGCAAaacgggcggggggaagggcgggagggagggggagttcGAGATGGA
AGGGCTGGAGGtgtggggggtgggaggggaggaggcgatcgaGGCGGCCT
GCAACGCCCAGGGAGAGGCTCGGCAGATGATGGCGGACAACATCGCCCGG
GCCCGGCGCGTGGACAAGAGCAAGTTTGTCGATAACGACTTTGACAAGGA
ATTCTTGCTGGGGAAGACGTTTGGGCAAGGGAAgcgggagcggaggggga
gggattga

Synonyms

Publications