rna8705, rna8705 (mRNA) Nannochloropsis gaditana

Overview
Namerna8705
Unique Namerna8705
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length567
Alignment locationKK037249.1:631881..632344 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100909g1.3160.mrna
Orig protein idgnl|cribi|Naga_100909g1.3160
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:631881..632344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100909g1gene8438Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8705rna8705-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21997.1cds8676Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8705 ID=rna8705|Name=rna8705|organism=Nannochloropsis gaditana|type=mRNA|length=567bp
ATGCCAAGAGGACCGTCCGACGCAGTGCACGCAGTGGTTAGGCAACGAGC
AGGAGGCGTAGAGACAGTGTTAGCAGTCAATTGTGGCTTTTTGGTTCACT
CTTTCATGCCCTTTTCTGCGCCGCACCGCCACCCTTTGTCTTTTTGCCTC
GTGCTTTGGATGCTGATCTCGTGTTCTATGCGCCTCCGCCCCAGTGTGGC
CTTCACCATCCGGGCACTACGACCCAAACCCAAACACCACCCCGGCGTTC
CAACTTTTTCCATCGCGCGTGTCCACCCCGTCAAACTTACATTTCTCCAC
ACATATCGACCTGCTACCGCGGGGGGCACGTCGGTGGAAAGGACATCGTG
GAGGTCGACAGCTATTCGCCTCATGGCTTCCACGAGCACCACGCCTCCTG
ACCCCCGGGTGAAAGTGAGGGCGGCGCATATCTTGGTCAAAAGCGAGGAG
GAAGCCGACGCCCTCATGGCCGTCCTTGAGAACGGCGCAGACTTCGCCGA
GTTGGCCATGGTGGAGAGCGACTGTCCTTCCCGAAAACAGGGCGGGGACC
TGGGATGGTTCGGGTAG
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protein sequence of rna8705

>rna8705-protein ID=rna8705-protein|Name=rna8705|organism=Nannochloropsis gaditana|type=polypeptide|length=96bp
MNLQMIFIYPISAPSPTTPHPHSFMTTYTASFAADAATPSVHVVPHANVP
DGVDALWLVGFALLSALTTEGIIDMYTYTRRLSLSGSMALRKRWVD
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mRNA from alignment at KK037249.1:631881..632344+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8705 ID=rna8705|Name=rna8705|organism=Nannochloropsis gaditana|type=mRNA|length=464bp|location=Sequence derived from alignment at KK037249.1:631881..632344+ (Nannochloropsis gaditana)
GACATGAACTATGCATTTAAGATCTTTCTCATCTCCGGGCTCGTGGCTTG
GCACGTGCGTCGAAAAACGCGGCGTGAGGGCAAGACAACCTTTATAATAT
GAATCTACAAATGATATTTATTTATCCAATATCTGCCCCATCACCAACGA
CACCCCATCCTCACAGCTTCATGACCACATACACCGCGTCCTTCGCCGCC
GATGCCGCGACCCCAAGCGTGCACGTGGTCCCGCACGCCAACGTCCCCGA
CGGGGTGGATGCTCTGTGGTTGGTGGGCTTTGCTTTGCTTTCGGCCTTGA
CCACGGAAGGTATTATAGATATGTACACATATACGAGGAGGTTATCATTA
TCTGGGAGCATGGCTTTGAGGAAGCGTTGGGTAGATTGACGTGAATATTC
TCCAGCACTTCGGGTGTCAGGAGCCTGTCTCAACCCCAACATCGcttctc
gcttccctccctcc
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Coding sequence (CDS) from alignment at KK037249.1:631881..632344+

>rna8705 ID=rna8705|Name=rna8705|organism=Nannochloropsis gaditana|type=CDS|length=291bp|location=Sequence derived from alignment at KK037249.1:631881..632344+ (Nannochloropsis gaditana)
ATGAATCTACAAATGATATTTATTTATCCAATATCTGCCCCATCACCAAC
GACACCCCATCCTCACAGCTTCATGACCACATACACCGCGTCCTTCGCCG
CCGATGCCGCGACCCCAAGCGTGCACGTGGTCCCGCACGCCAACGTCCCC
GACGGGGTGGATGCTCTGTGGTTGGTGGGCTTTGCTTTGCTTTCGGCCTT
GACCACGGAAGGTATTATAGATATGTACACATATACGAGGAGGTTATCAT
TATCTGGGAGCATGGCTTTGAGGAAGCGTTGGGTAGATTGA
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Synonyms
Publications