rna8689, rna8689 (mRNA) Nannochloropsis gaditana

Overview
Namerna8689
Unique Namerna8689
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length243
Alignment locationKK037249.1:595506..596603 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101922g2.3520.mrna
Orig protein idgnl|cribi|Naga_101922g2.3520
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:595506..596603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101922g2gene8422Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8689rna8689-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22013.1cds8660Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8689 ID=rna8689|Name=rna8689|organism=Nannochloropsis gaditana|type=mRNA|length=243bp
ATGGACTTCTTCGACCCCGACTTCATCCCCAACGGGAGCGACAACGGAGG
GCGATACACTTACGTCAAGCAGCCTGAGATTTGCAAGTGGAATTTGGAAA
AATTTGCGGAAGCTCTCTCCCTCCTCCTCCCCCTCGACCGCTCCCTTCCC
CTCCTCTCTTCCCTTTACGATGACGAGAGGAGGAGGAGCTGGTGGAGAAG
CTTTTCAAGACGATGGAGGAGACGGCGGCGGATTTCACGATGA
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protein sequence of rna8689

>rna8689-protein ID=rna8689-protein|Name=rna8689|organism=Nannochloropsis gaditana|type=polypeptide|length=107bp
SPPPPPRPSGQTQQLWALAQQDRGKIAEIFGAENVEAVLRELEGEMAKMR
ALEKTAGRIDRCRAQGEGEKRGEDELAWRAWVEGHYLPRLKREKEGGGGE
RGRRRSV
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mRNA from alignment at KK037249.1:595506..596603+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8689 ID=rna8689|Name=rna8689|organism=Nannochloropsis gaditana|type=mRNA|length=1098bp|location=Sequence derived from alignment at KK037249.1:595506..596603+ (Nannochloropsis gaditana)
tccccccctcctccccccaggcCCTCGGGCCAGACTCAGCAGCTGTGGGC
GCTAGCGCAACAGGACAGGGGCAAGATCGCCGAAATCTTCGGGGCCGAGA
AcgtggaggcggtgctgcgggagctggagggggagatggcgAAGATGAGG
GCCTTGGAGAAGACGGCGGGGCGGATTGACCGGTGTCGGgcccaggggga
gggggagaagaggggggaggacgagctggcgtggcgggcgtgggTGGAGG
GCCACTACCTCCCGCGGCttaagagggagaaggaagggggggggggggag
agggggaggaggaggagcgtgtGAAGgtgcgaggggggaagagggggtcg
ggggggggatggggacggaAACCGAGCCTAGTTAAGCCAACtgcttctct
cctctcttcctccccccctcccttccctccctccctccctcccctccctc
cctccctcccgtaGTCCATGCGCCAGGCCAATCCGTCCTTCATCCTCAGG
AACTGGATCGCCCAAGACGCCAtcgaggcggcggagaagggcgaTTTCTC
CCgcgtccgcctcgtcctctcccttctccaggaCCCTTTTTACTACCCGG
Aggacagggcgggaggggccgagggaggggaggagggagggggggaggga
gagtcaTTGGAGCTGACGAGGAGATACCGTGGGATGACTCCGGCATGGGC
CGCGGACTTGGTGTGCACGTGCTCgtcgtgagggagggagggagggaggg
agggagggagggagggagggagggagatgaggagggagggaaggagggga
agagggcgtggcgaAATGTCGCGAGATgcaagagagagaagagaggcatg
agaggcaagagagagaagagaggcgcggtggagggaggggacggaaggCG
TTGAGAGGGTGGATGCGGGTGGGGGCGGCGCAGTGgtgagggcaagggag
gatgAATGAGCTAGAGAGGCAAATTGTTTCAAAAATTGATGAGAGTGGAG
GGCGCCCGGGGCCTGGACGACGAGCAAAGGAGGCAGTCGGGTGTGGAAAA
TGCACGAAATTtgcagggggaaaagaaggaaggacagaCAAAGCGGAC
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Coding sequence (CDS) from alignment at KK037249.1:595506..596603+

>rna8689 ID=rna8689|Name=rna8689|organism=Nannochloropsis gaditana|type=CDS|length=324bp|location=Sequence derived from alignment at KK037249.1:595506..596603+ (Nannochloropsis gaditana)
tccccccctcctccccccaggcCCTCGGGCCAGACTCAGCAGCTGTGGGC
GCTAGCGCAACAGGACAGGGGCAAGATCGCCGAAATCTTCGGGGCCGAGA
AcgtggaggcggtgctgcgggagctggagggggagatggcgAAGATGAGG
GCCTTGGAGAAGACGGCGGGGCGGATTGACCGGTGTCGGgcccaggggga
gggggagaagaggggggaggacgagctggcgtggcgggcgtgggTGGAGG
GCCACTACCTCCCGCGGCttaagagggagaaggaagggggggggggggag
agggggaggaggaggagcgtgtGA
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Synonyms
Publications