EWM22019.1, cds8657 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|585102425|gb|EWM22019.1| (rna binding protein [Nannochloropsis gaditana]) HSP 1 Score: 654.44 bits (1687), Expect = 0.000e+0 Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query: 1 MPPTPSSRREECPKIMRARILHSCHAKMTWGNAKDSGSKESMDKLDVSLDELVKEGSKGRGAPRRGSAGKGLGRSATRGLPPKTNGGKGLPGPIRTQHKGTPSMRYNPLSRNAAPSSFQPAAAPVSVPAKQVVSLNREMLSQNHAGVLGRSNGGQVKVGGGGRGLLDRLGPKAGQQRAGTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMAPREGGREGGREGGGEGGKGGGREGDRGGGREGGKGVGMARERSEERQAGGNVKMGLFGSALEEEGGGDGRGSRRSR 332
MPPTPSSRREECPKIMRARILHSCHAKMTWGNAKDSGSKESMDKLDVSLDELVKEGSKGRGAPRRGSAGKGLGRSATRGLPPKTNGGKGLPGPIRTQHKGTPSMRYNPLSRNAAPSSFQPAAAPVSVPAKQVVSLNREMLSQNHAGVLGRSNGGQVKVGGGGRGLLDRLGPKAGQQRAGTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMAPREGGREGGREGGGEGGKGGGREGDRGGGREGGKGVGMARERSEERQAGGNVKMGLFGSALEEEGGGDGRGSRRSR
Sbjct: 1 MPPTPSSRREECPKIMRARILHSCHAKMTWGNAKDSGSKESMDKLDVSLDELVKEGSKGRGAPRRGSAGKGLGRSATRGLPPKTNGGKGLPGPIRTQHKGTPSMRYNPLSRNAAPSSFQPAAAPVSVPAKQVVSLNREMLSQNHAGVLGRSNGGQVKVGGGGRGLLDRLGPKAGQQRAGTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMAPREGGREGGREGGGEGGKGGGREGDRGGGREGGKGVGMARERSEERQAGGNVKMGLFGSALEEEGGGDGRGSRRSR 332
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|567177012|ref|XP_006400896.1| (hypothetical protein EUTSA_v10014531mg [Eutrema salsugineum] >gi|557101986|gb|ESQ42349.1| hypothetical protein EUTSA_v10014531mg [Eutrema salsugineum]) HSP 1 Score: 69.3218 bits (168), Expect = 4.285e-10 Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 0
Query: 179 GTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKM 255
GTK+ ISNL V +E+++ELFA VGE+ + F R GRS G AEV FT+ +AL AV+K++ LDG PM +++
Sbjct: 88 GTKLYISNLDYGVM-NEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVFTRRGDALAAVKKYNDVQLDGKPMKIEI 163
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|9757916|dbj|BAB08363.1| (RNA and export factor binding protein 2-I-like protein [Arabidopsis thaliana]) HSP 1 Score: 68.1662 bits (165), Expect = 1.103e-9 Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 0
Query: 179 GTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMA 256
GTK+ ISNL V +E+++ELFA VGE+ + F R GRS G AEV +++ +AL AV+K++ LDG PM +++
Sbjct: 87 GTKLYISNLDYGVM-NEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIV 163
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|565430514|ref|XP_006279678.1| (hypothetical protein CARUB_v10026991mg [Capsella rubella] >gi|482548382|gb|EOA12576.1| hypothetical protein CARUB_v10026991mg [Capsella rubella]) HSP 1 Score: 67.781 bits (164), Expect = 2.065e-9 Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 0
Query: 179 GTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMA 256
GTK+ ISNL V +++++ELFA VGE+ + F R GRS G AEV F++ +AL AV+K++ LDG PM +++
Sbjct: 92 GTKLYISNLDYGVM-NDDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVFSRRGDALAAVKKYNDVQLDGKPMKIEIV 168
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|727532373|ref|XP_010440882.1| (PREDICTED: THO complex subunit 4D isoform X1 [Camelina sativa]) HSP 1 Score: 65.4698 bits (158), Expect = 1.954e-8 Identity = 31/78 (39.74%), Postives = 56/78 (71.79%), Query Frame = 0
Query: 178 AGTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKM 255
AGT++ ++NL VT +E++RELF+ +GEV I + ++GR +G AEV + + S+A++A++K++ LDG PM +++
Sbjct: 102 AGTRLHVTNLDQGVT-NEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAIQALKKYNNVLLDGRPMRLEI 178
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|727518455|ref|XP_010435610.1| (PREDICTED: THO complex subunit 4D-like [Camelina sativa]) HSP 1 Score: 65.0846 bits (157), Expect = 2.527e-8 Identity = 31/78 (39.74%), Postives = 56/78 (71.79%), Query Frame = 0
Query: 178 AGTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKM 255
AGT++ ++NL VT +E++RELF+ +GEV I + ++GR +G AEV + + S+A++A++K++ LDG PM +++
Sbjct: 107 AGTRLHVTNLDQGVT-NEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAIQALKKYNNVLLDGRPMRLEI 183
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|554816994|ref|XP_005919280.1| (PREDICTED: THO complex subunit 4 [Haplochromis burtoni]) HSP 1 Score: 61.6178 bits (148), Expect = 2.649e-7 Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 0
Query: 181 KIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMAPREGGREGGREGGGEGGKGGGR 278
K+ ISNL V++S+ +RELFA G + A I + R GRS G A+V+F ++ALKA++ ++ LDG PM ++ A E + + G KG R
Sbjct: 108 KLLISNLDFGVSDSD-IRELFAEFGALKKASIHYDRSGRSKGTADVHFVNKADALKAMKHYNGVPLDGRPMKIQQATSEFDTQNTQNTQG-SNKGFDR 203
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|939298587|ref|XP_014267449.1| (PREDICTED: THO complex subunit 4 [Maylandia zebra]) HSP 1 Score: 61.2326 bits (147), Expect = 3.713e-7 Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 0
Query: 181 KIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMAPREGGREGGREGGGEGGKGGGR 278
K+ ISNL V++S+ +RELFA G + A I + R GRS G A+V+F ++ALKA++ ++ LDG PM ++ A E + + G KG R
Sbjct: 106 KLLISNLDFGVSDSD-IRELFAEFGALKKASIHYDRSGRSKGTADVHFVNKADALKAMKHYNGVPLDGRPMKIQQATLEFDTQNTQNTQG-SNKGFDR 201
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|584009490|ref|XP_006799689.1| (PREDICTED: THO complex subunit 4-like [Neolamprologus brichardi]) HSP 1 Score: 61.2326 bits (147), Expect = 4.040e-7 Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 0
Query: 181 KIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMAPREGGREGGREGGGEGGKGGGR 278
K+ ISNL V++S+ +RELFA G + A I + R GRS G A+V+F ++ALKA++ ++ LDG PM ++ A E + + G KG R
Sbjct: 106 KLLISNLDFGVSDSD-IRELFAEFGALKKASIHYDRSGRSKGTADVHFVNKADALKAMKHYNGVPLDGRPMKIQQATSEFDTQNRQNTQG-SNKGFDR 201 The following BLAST results are available for this feature:
BLAST of EWM22019.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 9
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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