EWM22019.1, cds8657 (CDS) Nannochloropsis gaditana

Overview
NameEWM22019.1
Unique Namecds8657
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:590046..590147 +
Alignment locationKK037249.1:590265..590574 +
Alignment locationKK037249.1:590756..590976 +
Alignment locationKK037249.1:591113..591154 +
Alignment locationKK037249.1:591293..591616 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22019.1
Productrna binding protein
Orig transcript idgnl|cribi|Naga_100361g5.4772.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:590046..590147 +
KK037249.1supercontigKK037249.1:590265..590574 +
KK037249.1supercontigKK037249.1:590756..590976 +
KK037249.1supercontigKK037249.1:591113..591154 +
KK037249.1supercontigKK037249.1:591293..591616 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|585102425|gb|EWM22019.1| (rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 654.44 bits (1687), Expect = 0.000e+0
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query:    1 MPPTPSSRREECPKIMRARILHSCHAKMTWGNAKDSGSKESMDKLDVSLDELVKEGSKGRGAPRRGSAGKGLGRSATRGLPPKTNGGKGLPGPIRTQHKGTPSMRYNPLSRNAAPSSFQPAAAPVSVPAKQVVSLNREMLSQNHAGVLGRSNGGQVKVGGGGRGLLDRLGPKAGQQRAGTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMAPREGGREGGREGGGEGGKGGGREGDRGGGREGGKGVGMARERSEERQAGGNVKMGLFGSALEEEGGGDGRGSRRSR 332
            MPPTPSSRREECPKIMRARILHSCHAKMTWGNAKDSGSKESMDKLDVSLDELVKEGSKGRGAPRRGSAGKGLGRSATRGLPPKTNGGKGLPGPIRTQHKGTPSMRYNPLSRNAAPSSFQPAAAPVSVPAKQVVSLNREMLSQNHAGVLGRSNGGQVKVGGGGRGLLDRLGPKAGQQRAGTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMAPREGGREGGREGGGEGGKGGGREGDRGGGREGGKGVGMARERSEERQAGGNVKMGLFGSALEEEGGGDGRGSRRSR
Sbjct:    1 MPPTPSSRREECPKIMRARILHSCHAKMTWGNAKDSGSKESMDKLDVSLDELVKEGSKGRGAPRRGSAGKGLGRSATRGLPPKTNGGKGLPGPIRTQHKGTPSMRYNPLSRNAAPSSFQPAAAPVSVPAKQVVSLNREMLSQNHAGVLGRSNGGQVKVGGGGRGLLDRLGPKAGQQRAGTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMAPREGGREGGREGGGEGGKGGGREGDRGGGREGGKGVGMARERSEERQAGGNVKMGLFGSALEEEGGGDGRGSRRSR 332          
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|567177012|ref|XP_006400896.1| (hypothetical protein EUTSA_v10014531mg [Eutrema salsugineum] >gi|557101986|gb|ESQ42349.1| hypothetical protein EUTSA_v10014531mg [Eutrema salsugineum])

HSP 1 Score: 69.3218 bits (168), Expect = 4.285e-10
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 0
Query:  179 GTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKM 255
            GTK+ ISNL   V  +E+++ELFA VGE+    + F R GRS G AEV FT+  +AL AV+K++   LDG PM +++
Sbjct:   88 GTKLYISNLDYGVM-NEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVFTRRGDALAAVKKYNDVQLDGKPMKIEI 163          
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|9757916|dbj|BAB08363.1| (RNA and export factor binding protein 2-I-like protein [Arabidopsis thaliana])

HSP 1 Score: 68.1662 bits (165), Expect = 1.103e-9
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 0
Query:  179 GTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMA 256
            GTK+ ISNL   V  +E+++ELFA VGE+    + F R GRS G AEV +++  +AL AV+K++   LDG PM +++ 
Sbjct:   87 GTKLYISNLDYGVM-NEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIV 163          
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|565430514|ref|XP_006279678.1| (hypothetical protein CARUB_v10026991mg [Capsella rubella] >gi|482548382|gb|EOA12576.1| hypothetical protein CARUB_v10026991mg [Capsella rubella])

HSP 1 Score: 67.781 bits (164), Expect = 2.065e-9
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 0
Query:  179 GTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMA 256
            GTK+ ISNL   V  +++++ELFA VGE+    + F R GRS G AEV F++  +AL AV+K++   LDG PM +++ 
Sbjct:   92 GTKLYISNLDYGVM-NDDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVFSRRGDALAAVKKYNDVQLDGKPMKIEIV 168          
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|727532373|ref|XP_010440882.1| (PREDICTED: THO complex subunit 4D isoform X1 [Camelina sativa])

HSP 1 Score: 65.4698 bits (158), Expect = 1.954e-8
Identity = 31/78 (39.74%), Postives = 56/78 (71.79%), Query Frame = 0
Query:  178 AGTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKM 255
            AGT++ ++NL   VT +E++RELF+ +GEV    I + ++GR +G AEV + + S+A++A++K++   LDG PM +++
Sbjct:  102 AGTRLHVTNLDQGVT-NEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAIQALKKYNNVLLDGRPMRLEI 178          
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|727518455|ref|XP_010435610.1| (PREDICTED: THO complex subunit 4D-like [Camelina sativa])

HSP 1 Score: 65.0846 bits (157), Expect = 2.527e-8
Identity = 31/78 (39.74%), Postives = 56/78 (71.79%), Query Frame = 0
Query:  178 AGTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKM 255
            AGT++ ++NL   VT +E++RELF+ +GEV    I + ++GR +G AEV + + S+A++A++K++   LDG PM +++
Sbjct:  107 AGTRLHVTNLDQGVT-NEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAIQALKKYNNVLLDGRPMRLEI 183          
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|554816994|ref|XP_005919280.1| (PREDICTED: THO complex subunit 4 [Haplochromis burtoni])

HSP 1 Score: 61.6178 bits (148), Expect = 2.649e-7
Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 0
Query:  181 KIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMAPREGGREGGREGGGEGGKGGGR 278
            K+ ISNL   V++S+ +RELFA  G +  A I + R GRS G A+V+F   ++ALKA++ ++   LDG PM ++ A  E   +  +   G   KG  R
Sbjct:  108 KLLISNLDFGVSDSD-IRELFAEFGALKKASIHYDRSGRSKGTADVHFVNKADALKAMKHYNGVPLDGRPMKIQQATSEFDTQNTQNTQG-SNKGFDR 203          
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|939298587|ref|XP_014267449.1| (PREDICTED: THO complex subunit 4 [Maylandia zebra])

HSP 1 Score: 61.2326 bits (147), Expect = 3.713e-7
Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 0
Query:  181 KIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMAPREGGREGGREGGGEGGKGGGR 278
            K+ ISNL   V++S+ +RELFA  G +  A I + R GRS G A+V+F   ++ALKA++ ++   LDG PM ++ A  E   +  +   G   KG  R
Sbjct:  106 KLLISNLDFGVSDSD-IRELFAEFGALKKASIHYDRSGRSKGTADVHFVNKADALKAMKHYNGVPLDGRPMKIQQATLEFDTQNTQNTQG-SNKGFDR 201          
BLAST of EWM22019.1 vs. NCBI_GenBank
Match: gi|584009490|ref|XP_006799689.1| (PREDICTED: THO complex subunit 4-like [Neolamprologus brichardi])

HSP 1 Score: 61.2326 bits (147), Expect = 4.040e-7
Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 0
Query:  181 KIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMAPREGGREGGREGGGEGGKGGGR 278
            K+ ISNL   V++S+ +RELFA  G +  A I + R GRS G A+V+F   ++ALKA++ ++   LDG PM ++ A  E   +  +   G   KG  R
Sbjct:  106 KLLISNLDFGVSDSD-IRELFAEFGALKKASIHYDRSGRSKGTADVHFVNKADALKAMKHYNGVPLDGRPMKIQQATSEFDTQNRQNTQG-SNKGFDR 201          
The following BLAST results are available for this feature:
BLAST of EWM22019.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585102425|gb|EWM22019.1|0.000e+0100.00rna binding protein [Nannochloropsis gaditana][more]
gi|567177012|ref|XP_006400896.1|4.285e-1048.05hypothetical protein EUTSA_v10014531mg [Eutrema sa... [more]
gi|9757916|dbj|BAB08363.1|1.103e-944.87RNA and export factor binding protein 2-I-like pro... [more]
gi|565430514|ref|XP_006279678.1|2.065e-944.87hypothetical protein CARUB_v10026991mg [Capsella r... [more]
gi|727532373|ref|XP_010440882.1|1.954e-839.74PREDICTED: THO complex subunit 4D isoform X1 [Came... [more]
gi|727518455|ref|XP_010435610.1|2.527e-839.74PREDICTED: THO complex subunit 4D-like [Camelina s... [more]
gi|554816994|ref|XP_005919280.1|2.649e-738.78PREDICTED: THO complex subunit 4 [Haplochromis bur... [more]
gi|939298587|ref|XP_014267449.1|3.713e-738.78PREDICTED: THO complex subunit 4 [Maylandia zebra][more]
gi|584009490|ref|XP_006799689.1|4.040e-738.78PREDICTED: THO complex subunit 4-like [Neolamprolo... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8686rna8686Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications