rna8686, rna8686 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8686
Unique Name	rna8686
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1312
Alignment location	KK037249.1:589640..591678 +

Link to JBrowse

Properties


Property Name	Value
Product	rna binding protein
Orig transcript id	gnl\|cribi\|Naga_100361g5.4772.mrna
Orig protein id	gnl\|cribi\|Naga_100361g5.4772
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:589640..591678 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100361g5	gene8419	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8686	rna8686-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22019.1	cds8657	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:589640..591678+
coding sequence from alignment at KK037249.1:589640..591678+

mRNA sequence

>rna8686 ID=rna8686|Name=rna8686|organism=Nannochloropsis gaditana|type=mRNA|length=1312bp
ATGGCCGCAAGCTCTCCCTGGTCCTGCCCGGGGCCTGCGCATGCTTTCTC
GCAGTCGTCGCAAGCATTATTCTTGAAGCCTCCCGCTGCAGGAGAGTCAA
CTCAATCTGCCTTTGCCAACAACGTCAAACCCGAGAACGGCACCCTTTCC
CCCTACCATGTCCCATCCGAGCGACTTCCCTTCCTCCGATCCACGACTCC
CGCCCTCTCGTCACCGCCCTCGACACCCTCCCTCCCCCGGGCAGTCGTCA
TCATCCCCGGGTATGCCTCTGACGCCTCCCTGTACAAGCGACTGGAAAAT
TCCCTGAGGGCACGGGGCTTTCCATGCTGGACTGTCCCGATCTCCGCCTA
CATGTGGGTGCCTACCTTCGGCGGCCGCTCGATTCGGCCCATCCTAGACC
GCATCCACGAAACGGTCCTGGACGTGGCCCTGTCGGACCGGCCCCTGCCG
TCGCCGCCCTTCCCCGCGCCTGCCTCGGAGGCAGAAGCCGAGAAGGCCGC
CGCCCCCCCCGCTCCCCCCGCGCCACCTGGGACCTCCTCAAGTGCCCCAG
GCAGCAGTGCGGCTCCCGCCAAGACCTTCGCCCTCCTCAACTTTCTCCGG
GAGCTTCTGGACCCCGCCAAGGGCCTCCAACCTCCTCCCCTCCCCTCCCC
TTCCTCCGTCCCACCCTCCGCCCGCCGATACGACGTTGCCTTGGTCGGTC
ACTCGGCGGGAGGCTGGGTGGCGCGCATCTACCTTTCCTCTGTGCCTTAC
GACGGGCGAGCCTACCAGGGGAGTCGCTTCGTCTCCACCCTCATCACCCT
CGGCAGCCCCCACGTCTTTCCCAGCCGTTACCGGGACAGGGCGGTGGGCA
AGGTACCCTACGCCCTCCGGAACTTGAAGTTTGTGGAGGAGTCCTGCGGG
AGGGATGGCGGGGGGGGCGTGCGCATGGTGTGTGTGGGGAGTAGGGCGGT
GCGGGGACGCTCCTGGCTGGGGGGCCGGGTCAGGGACTGGGCGGCTAGCA
GCTACGCTCTGTGTGGGTACGAGGAGGAGGTCGGGGGGGAGGTCGGGGGG
AAGGGCGGGGTGGAGGGCGACGGGATCACGCCCGTGGAGAGCGCGCTGGG
CCTCCCGGGGGCGGTGCGGGTGGAGCTGGAGGGAGAGGTGTTGCATGGAC
CGGAGGTGGAGAGGCGGGGGCGCCGGTGGTATGGCACTGACCCCTGGCCG
CTGGAGCGATGGGTGTCGTACCTGCGTGAGGACGGGAAGGGGGAGGGGGA
GGGGGAGGGGGAAAACAGATGGAGAGAAAGAGACGTGGGCGTGGGGGCGG
GATGAGGTGCGC

protein sequence of rna8686

>rna8686-protein ID=rna8686-protein|Name=rna8686|organism=Nannochloropsis gaditana|type=polypeptide|length=332bp
MPPTPSSRREECPKIMRARILHSCHAKMTWGNAKDSGSKESMDKLDVSLD
ELVKEGSKGRGAPRRGSAGKGLGRSATRGLPPKTNGGKGLPGPIRTQHKG
TPSMRYNPLSRNAAPSSFQPAAAPVSVPAKQVVSLNREMLSQNHAGVLGR
SNGGQVKVGGGGRGLLDRLGPKAGQQRAGTKIEISNLLPDVTESEELREL
FATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVP
MHVKMAPREGGREGGREGGGEGGKGGGREGDRGGGREGGKGVGMARERSE
ERQAGGNVKMGLFGSALEEEGGGDGRGSRRSR

mRNA from alignment at KK037249.1:589640..591678+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8686 ID=rna8686|Name=rna8686|organism=Nannochloropsis gaditana|type=mRNA|length=2039bp|location=Sequence derived from alignment at KK037249.1:589640..591678+ (Nannochloropsis gaditana)
GGGGGGATAAAACATGTCGGGGAGATCCCTCGTGCCGGCAGAAACATGAG
GCActcaaggaaaaggagataCTGGGACATGGtagggggaaagggtgccG
TTCTCGGGTTTGACGTTGTTGGCAAAGGCAGATTGAGTTGACTCTCCTGC
AGCGGGAGGCTTCAAGAATAATGCTTGCGACGACTGCGAGAAAGCATGCG
CAGGCCCCGGGCAGGACCAGGGAGAGCTGTGAAAATGCAAAAGATGTGAG
CAGTGTTCAGTAAAAGAGAGTCTTTGGCCGTTGCTATTTATCAACGTTCA
AAAGGGGCTCGCAGGCCTCGGGTTGTGAGAGTCGCCTCGCGCTATCCCTC
CCGCTGCTTCTTGTTCGTGATACAACATATCACAGACCTTGCGGCCATCT
TCGCTGATGCCACCGACTCCGTCTTCCCGCCGAGAAGAGTGTCCCAAAAT
CATGCGGGCACGGATTCTGCACTCGTGCCATGCCAAAATGACTTGGGGAA
ACGCAAAGGTCTGCGACGTCTTTTTCTCACGACGCGCGACCGCTGCAGCA
TGacagcctccttcctccccttctccttcctttgcttcttccctcgtccc
acgcccttttccatccGCATGGCAGGACTCGGGCAGCAAGGAAAGCATGG
ACAAGCTGGATGTGTCGTTGGATGAATTGGTCAAGGAAGGCAgcaagggc
cggggggctCCGAGACGTGGGTCTGCAGGCAAGGGCCTCGGACGAAGCGC
AACGCGTGGGCTCCCCCCCAAAACGAACGGGGGAAAAGGGCTGCCGGGAC
CGATACGCACGCAGCACAAAGGCACGCCCTCAATGCGGTACAACCCCTTG
AGCCGAAATGcggcgccttcttccttccaacCCGCCGCGGCCCCTGTCTC
GGTCCCCGCCAAGCAGGTGGTGTCACTGAACAGGGGTAagtggaggggag
cagaGACGGGGAGGATAGCTTTCCGCTTCTCTTGGCTGTTAGACTGAAGA
TCTTTGCTCGCGTGCACCTTGCCCGgacctttcttccttcgaGGGACCAC
TTAGGTCCGCCAGGCCTCTCAAACTCcacctccgtccctccctccctccc
tccctcctctcggcAGAAATGCTCAGTCAGAACCACGCCGGCGTCCTAGG
CCGCAGTAACGGCGGGCAggtgaaggtgggaggagggggacggggcctCT
TGGATCGGCTGGGGCCCAAGGCGGGCCAGCAGAGGGCGGGCACCAAGATC
GAGATcagcaacctcctccccgacgtgacggagagcgaggagctTCGGGA
GCTCTTTGCCACCGTGGGGGAGGTTCTGTACGccgaggtggggagggagg
gagggagggagggagggagaagggggagggcgcgccGATGCGTCGCTTTG
AGGATTCGCGGCCAgcaccctcatcctccctttcctaccctctttcccct
ccttccccccctccctcccacagaTCAAGTTCGGGCGGGACGGACGGTCG
ACAGGCCAAGCAGAGGTACcaaccctccttttcccctcccgtgcctccct
ctcctgcttccttTATCTcactcctcttctctcccttcctcccttcctcc
ctctttccctccctccctccctgccccactccctccctccctccctccct
caggtctACTTCACCAAGTTCTCGGAGGCGCtcaaggcggtggagaagtT
CCACACGCGGACATTGGACGGTGTCCCCATGCACGTGAAGATGGcgccca
gggaggggggcagggagggggggagggagggagggggggaggggggcaag
ggggggggcagggagggggacaggggggggggaagggagggagggaaggg
cgtgggaatggcgcgggaaaggagcgaagagaggcaggcaggagggaatg
TGAAGATGGGGCTCTTCGGATcggctctggaggaggagggggggggggat
ggaagggggagccGACGTTCTCGGTAATTATCAGCGATGATGCGGATGGA
CGAGGTGGTGACGGTGGTGGGGttgggagaaggggagga

Coding sequence (CDS) from alignment at KK037249.1:589640..591678+

>rna8686 ID=rna8686|Name=rna8686|organism=Nannochloropsis gaditana|type=CDS|length=4995bp|location=Sequence derived from alignment at KK037249.1:589640..591678+ (Nannochloropsis gaditana)
ATGCCACCGACTCCGTCTTCCCGCCGAGAAGAGTGTCCCAAAATCATGCG
GGCACGGATTCTGCACTCGTGCCATGCCAAAATGACTTGGGGAAACGCAA
AGGACTCGGGCAGCAAGGAAAGCATGGACAAGCTGGATGTGTCGTTGGAT
GAATTGGTCAAGGAAGGCAgcaagggccggggggctCCGAGACGTGGGTC
TGCAGGCAAGGGCCTCGGACGAAGCGCAACGCGTGGGCTCCCCCCCAAAA
CGAACGGGGGAAAAGGGCTGCCGGGACCGATACGCACGCAGCACAAAGGC
ACGCCCTCAATGCGGTACAACCCCTTGAGCCGAAATGcggcgccttcttc
cttccaacCCGCCGCGGCCCCTGTCTCGGTCCCCGCCAAGCAGGTGGTGT
CACTGAACAGGGAAATGCTCAGTCAGAACCACGCCGGCGTCCTAGGCCGC
AGTAACGGCGGGCAggtgaaggtgggaggagggggacggggcctCTTGGA
TCGGCTGGGGCCCAAGGCGGGCCAGCAGAGGGCGGGCACCAAGATCGAGA
TcagcaacctcctccccgacgtgacggagagcgaggagctTCGGGAGCTC
TTTGCCACCGTGGGGGAGGTTCTGTACGccgagaTCAAGTTCGGGCGGGA
CGGACGGTCGACAGGCCAAGCAGAGgtctACTTCACCAAGTTCTCGGAGG
CGCtcaaggcggtggagaagtTCCACACGCGGACATTGGACGGTGTCCCC
ATGCACGTGAAGATGGcgcccagggaggggggcagggagggggggaggga
gggagggggggaggggggcaagggggggggcagggagggggacagggggg
ggggaagggagggagggaagggcgtgggaatggcgcgggaaaggagcgaa
gagaggcaggcaggagggaatgTGAAGATGGGGCTCTTCGGATcggctct
ggaggaggagggggggggggatggaagggggagccGACGTTCTCGGTAAA
TGCCACCGACTCCGTCTTCCCGCCGAGAAGAGTGTCCCAAAATCATGCGG
GCACGGATTCTGCACTCGTGCCATGCCAAAATGACTTGGGGAAACGCAAA
GGACTCGGGCAGCAAGGAAAGCATGGACAAGCTGGATGTGTCGTTGGATG
AATTGGTCAAGGAAGGCAgcaagggccggggggctCCGAGACGTGGGTCT
GCAGGCAAGGGCCTCGGACGAAGCGCAACGCGTGGGCTCCCCCCCAAAAC
GAACGGGGGAAAAGGGCTGCCGGGACCGATACGCACGCAGCACAAAGGCA
CGCCCTCAATGCGGTACAACCCCTTGAGCCGAAATGcggcgccttcttcc
ttccaacCCGCCGCGGCCCCTGTCTCGGTCCCCGCCAAGCAGGTGGTGTC
ACTGAACAGGGAAATGCTCAGTCAGAACCACGCCGGCGTCCTAGGCCGCA
GTAACGGCGGGCAggtgaaggtgggaggagggggacggggcctCTTGGAT
CGGCTGGGGCCCAAGGCGGGCCAGCAGAGGGCGGGCACCAAGATCGAGAT
cagcaacctcctccccgacgtgacggagagcgaggagctTCGGGAGCTCT
TTGCCACCGTGGGGGAGGTTCTGTACGccgagaTCAAGTTCGGGCGGGAC
GGACGGTCGACAGGCCAAGCAGAGgtctACTTCACCAAGTTCTCGGAGGC
GCtcaaggcggtggagaagtTCCACACGCGGACATTGGACGGTGTCCCCA
TGCACGTGAAGATGGcgcccagggaggggggcagggagggggggagggag
ggagggggggaggggggcaagggggggggcagggagggggacaggggggg
gggaagggagggagggaagggcgtgggaatggcgcgggaaaggagcgaag
agaggcaggcaggagggaatgTGAAGATGGGGCTCTTCGGATcggctctg
gaggaggagggggggggggatggaagggggagccGACGTTCTCGGTAAAT
GCCACCGACTCCGTCTTCCCGCCGAGAAGAGTGTCCCAAAATCATGCGGG
CACGGATTCTGCACTCGTGCCATGCCAAAATGACTTGGGGAAACGCAAAG
GACTCGGGCAGCAAGGAAAGCATGGACAAGCTGGATGTGTCGTTGGATGA
ATTGGTCAAGGAAGGCAgcaagggccggggggctCCGAGACGTGGGTCTG
CAGGCAAGGGCCTCGGACGAAGCGCAACGCGTGGGCTCCCCCCCAAAACG
AACGGGGGAAAAGGGCTGCCGGGACCGATACGCACGCAGCACAAAGGCAC
GCCCTCAATGCGGTACAACCCCTTGAGCCGAAATGcggcgccttcttcct
tccaacCCGCCGCGGCCCCTGTCTCGGTCCCCGCCAAGCAGGTGGTGTCA
CTGAACAGGGAAATGCTCAGTCAGAACCACGCCGGCGTCCTAGGCCGCAG
TAACGGCGGGCAggtgaaggtgggaggagggggacggggcctCTTGGATC
GGCTGGGGCCCAAGGCGGGCCAGCAGAGGGCGGGCACCAAGATCGAGATc
agcaacctcctccccgacgtgacggagagcgaggagctTCGGGAGCTCTT
TGCCACCGTGGGGGAGGTTCTGTACGccgagaTCAAGTTCGGGCGGGACG
GACGGTCGACAGGCCAAGCAGAGgtctACTTCACCAAGTTCTCGGAGGCG
CtcaaggcggtggagaagtTCCACACGCGGACATTGGACGGTGTCCCCAT
GCACGTGAAGATGGcgcccagggaggggggcagggagggggggagggagg
gagggggggaggggggcaagggggggggcagggagggggacagggggggg
ggaagggagggagggaagggcgtgggaatggcgcgggaaaggagcgaaga
gaggcaggcaggagggaatgTGAAGATGGGGCTCTTCGGATcggctctgg
aggaggagggggggggggatggaagggggagccGACGTTCTCGGTAAATG
CCACCGACTCCGTCTTCCCGCCGAGAAGAGTGTCCCAAAATCATGCGGGC
ACGGATTCTGCACTCGTGCCATGCCAAAATGACTTGGGGAAACGCAAAGG
ACTCGGGCAGCAAGGAAAGCATGGACAAGCTGGATGTGTCGTTGGATGAA
TTGGTCAAGGAAGGCAgcaagggccggggggctCCGAGACGTGGGTCTGC
AGGCAAGGGCCTCGGACGAAGCGCAACGCGTGGGCTCCCCCCCAAAACGA
ACGGGGGAAAAGGGCTGCCGGGACCGATACGCACGCAGCACAAAGGCACG
CCCTCAATGCGGTACAACCCCTTGAGCCGAAATGcggcgccttcttcctt
ccaacCCGCCGCGGCCCCTGTCTCGGTCCCCGCCAAGCAGGTGGTGTCAC
TGAACAGGGAAATGCTCAGTCAGAACCACGCCGGCGTCCTAGGCCGCAGT
AACGGCGGGCAggtgaaggtgggaggagggggacggggcctCTTGGATCG
GCTGGGGCCCAAGGCGGGCCAGCAGAGGGCGGGCACCAAGATCGAGATca
gcaacctcctccccgacgtgacggagagcgaggagctTCGGGAGCTCTTT
GCCACCGTGGGGGAGGTTCTGTACGccgagaTCAAGTTCGGGCGGGACGG
ACGGTCGACAGGCCAAGCAGAGgtctACTTCACCAAGTTCTCGGAGGCGC
tcaaggcggtggagaagtTCCACACGCGGACATTGGACGGTGTCCCCATG
CACGTGAAGATGGcgcccagggaggggggcagggagggggggagggaggg
agggggggaggggggcaagggggggggcagggagggggacaggggggggg
gaagggagggagggaagggcgtgggaatggcgcgggaaaggagcgaagag
aggcaggcaggagggaatgTGAAGATGGGGCTCTTCGGATcggctctgga
ggaggagggggggggggatggaagggggagccGACGTTCTCGGTAAATGC
CACCGACTCCGTCTTCCCGCCGAGAAGAGTGTCCCAAAATCATGCGGGCA
CGGATTCTGCACTCGTGCCATGCCAAAATGACTTGGGGAAACGCAAAGGA
CTCGGGCAGCAAGGAAAGCATGGACAAGCTGGATGTGTCGTTGGATGAAT
TGGTCAAGGAAGGCAgcaagggccggggggctCCGAGACGTGGGTCTGCA
GGCAAGGGCCTCGGACGAAGCGCAACGCGTGGGCTCCCCCCCAAAACGAA
CGGGGGAAAAGGGCTGCCGGGACCGATACGCACGCAGCACAAAGGCACGC
CCTCAATGCGGTACAACCCCTTGAGCCGAAATGcggcgccttcttccttc
caacCCGCCGCGGCCCCTGTCTCGGTCCCCGCCAAGCAGGTGGTGTCACT
GAACAGGGAAATGCTCAGTCAGAACCACGCCGGCGTCCTAGGCCGCAGTA
ACGGCGGGCAggtgaaggtgggaggagggggacggggcctCTTGGATCGG
CTGGGGCCCAAGGCGGGCCAGCAGAGGGCGGGCACCAAGATCGAGATcag
caacctcctccccgacgtgacggagagcgaggagctTCGGGAGCTCTTTG
CCACCGTGGGGGAGGTTCTGTACGccgagaTCAAGTTCGGGCGGGACGGA
CGGTCGACAGGCCAAGCAGAGgtctACTTCACCAAGTTCTCGGAGGCGCt
caaggcggtggagaagtTCCACACGCGGACATTGGACGGTGTCCCCATGC
ACGTGAAGATGGcgcccagggaggggggcagggagggggggagggaggga
gggggggaggggggcaagggggggggcagggagggggacagggggggggg
aagggagggagggaagggcgtgggaatggcgcgggaaaggagcgaagaga
ggcaggcaggagggaatgTGAAGATGGGGCTCTTCGGATcggctctggag
gaggagggggggggggatggaagggggagccGACGTTCTCGGTAA

Synonyms

Publications