EWM22017.1, cds8655 (CDS) Nannochloropsis gaditana

Overview
NameEWM22017.1
Unique Namecds8655
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:586634..586718 +
Alignment locationKK037249.1:586890..587494 +
Alignment locationKK037249.1:587808..587933 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22017.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100361g3.4770.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:586634..586718 +
KK037249.1supercontigKK037249.1:586890..587494 +
KK037249.1supercontigKK037249.1:587808..587933 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM22017.1 vs. NCBI_GenBank
Match: gi|553178916|ref|XP_005852621.1| (hypothetical protein NGA_0713600 [Nannochloropsis gaditana CCMP526] >gi|422295912|gb|EKU23211.1| hypothetical protein NGA_0713600 [Nannochloropsis gaditana CCMP526] >gi|585102423|gb|EWM22017.1| hypothetical protein Naga_100361g3 [Nannochloropsis gaditana])

HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0 
Query:    1 MRSHGLSFIGALVVAGLLPLSVLGNKPQAPLESRPGPNRTTECPYFFNPKPSALTGIGNATTFGPLVDSVDYSLTFQKIRWGRNTWIQGRFYSNVQDLPIEDVTFCNMLYNYTPGGLEYSPLYQGRVRFSPRVKGPQPQPVVYPNVSTPYTTGDGFETVCVTVPYVKARGRQKVRFLYSSNICSTQVTFKGWVEFKNPFASLYPATAPATCEAAEVNSAPNTFNKVRTYGSDNRNIPVSCGTCTPGRNCKGNRAAHTNRKDNRAERKAGKV 271
            MRSHGLSFIGALVVAGLLPLSVLGNKPQAPLESRPGPNRTTECPYFFNPKPSALTGIGNATTFGPLVDSVDYSLTFQKIRWGRNTWIQGRFYSNVQDLPIEDVTFCNMLYNYTPGGLEYSPLYQGRVRFSPRVKGPQPQPVVYPNVSTPYTTGDGFETVCVTVPYVKARGRQKVRFLYSSNICSTQVTFKGWVEFKNPFASLYPATAPATCEAAEVNSAPNTFNKVRTYGSDNRNIPVSCGTCTPGRNCKGNRAAHTNRKDNRAERKAGKV
Sbjct:    1 MRSHGLSFIGALVVAGLLPLSVLGNKPQAPLESRPGPNRTTECPYFFNPKPSALTGIGNATTFGPLVDSVDYSLTFQKIRWGRNTWIQGRFYSNVQDLPIEDVTFCNMLYNYTPGGLEYSPLYQGRVRFSPRVKGPQPQPVVYPNVSTPYTTGDGFETVCVTVPYVKARGRQKVRFLYSSNICSTQVTFKGWVEFKNPFASLYPATAPATCEAAEVNSAPNTFNKVRTYGSDNRNIPVSCGTCTPGRNCKGNRAAHTNRKDNRAERKAGKV 271
The following BLAST results are available for this feature:
BLAST of EWM22017.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|553178916|ref|XP_005852621.1|0.000e+0100.00hypothetical protein NGA_0713600 [Nannochloropsis ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8684rna8684Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications