rna8684, rna8684 (mRNA) Nannochloropsis gaditana

Overview
Namerna8684
Unique Namerna8684
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1526
Alignment locationKK037249.1:586421..588216 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100361g3.4770.mrna
Orig protein idgnl|cribi|Naga_100361g3.4770
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:586421..588216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100361g3gene8417Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8684rna8684-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22017.1cds8655Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8684 ID=rna8684|Name=rna8684|organism=Nannochloropsis gaditana|type=mRNA|length=1526bp
CGTTGTGTCTTAAGGCAGACGTCCTGACTACGGCTCAGAGGCTGCATGCC
AAGGTCGTATACTCGCTATTCGACAGCGAGAGGTGAAGGACGCATACGTA
TCGCTTGCCGACACTCACAAGCCAGAAACTTGCCGCAAGCTCTTTTTCAC
GCGAAAACACATGCACATTGTGCAGGCGACACTGCTAGGGTATCACTGGA
CATAAAGATGCGTTCGTTTTGGGCTTGTGTTCGGAGGCAAGATATCTTCG
AGAAGCGGTGCCACCGAAATGTGTGCCACATTTCAAGTCGCTCGATTGGT
AGCACTGGCCACATAGGCTCGGGCGGCACCAATGCCCAAGGTCCCCAACT
CTTCGCGTTCGACGAGGCCGTGGCCCTGCGCGAAGTCTCGCCGTCCTCGC
CGCTTTCCTCCCATCTGCCCTCCAGACCACGAGTTTTCCAGGGATACCTC
GATGAAAGGTGGTCCTACGGGGATGCCCCGAACGGCGGCATCCTCACCTC
CATGGCCATCACGGCTGCCCGCCGCCTGAGCAGTCCCGCTCGCCCGGACC
CTTTGTCTGTGTCCACCTACTTCGTCAAGAAGGCCCTCGAAAAGACACCG
GTCTTCCTCCACGTGACGCCCCTTGCTGCCTCCCGCTCGCAGGAAACCCT
TCAGGTGACCCTCGTGCAGGAAAATGAGGCACGGGCCCATTTTCTCGCCA
CCTTTGGCGCTCTCGAGTCCTTCAAGGGTTTGGACATGAACCACCTGCTT
CCCCCCGTCCTTCCCCCCAGAGCCCACTGCCTGGACCTGATGGCGCTCCT
CCACGAGGAACAGCCCGCGAACCATAAGATAGGGGACAGGATCGAGCTCT
GGGTACCGGAGGAGTCCGCGTTTATCAAGGGCATTGTCAGGGGGGAACCG
ATCAACTCGATGGAAGAGCCCTGTGTGCTGGAGGGTTGGGGGGCTTTCCG
GGCCGAGCGTGCTCCCGATGGCGAATATGGAAGGGATGGGGCGCCTGCAT
CGGGCCTGGAGGGTCTCAGCGGGTCCTGGCGACGCCGGCCATGCCTGACG
TCATTGGCCTTCTTCAACGATGCCTACCCTGCCCCTGTCCAGACCTATCG
AGGGGGCAGCTCTAGACGAGATGGGGGGGAAATGAGCCAAGGATTGGGCG
GGGGAACAGGGAACGAGGGGATAGAAAAGGAGGCAGGGGAACTGGGAAGA
GAGAACTCAGGAAGAGAGCCATGGGCATGGATTCCATCACTGGAGCTGAC
GACGCACTTCTGGGAGAGCATTCCTGGGCCGCCAACGTGCGAAAAGAAGG
GAGAGAAGGCGCGCTCCCAGATTGCTTCTACACATGTTCCTTATCTACGG
CTGCGTTTTTCCACGCGCTTCGCCCGGCGGGGCCTCCTCTTCTGTGACAG
TGAAGTATGGGCGGAGGACGCTTCTACCCTTTATTCCACTTCACGGCAGC
TGGCAAGGGTGTTAAATCCAAGATAAAAGTTGTCAAATATCCTGAAAGAA
AACATGGAAGAAAAAGTTGTCAACCT
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protein sequence of rna8684

>rna8684-protein ID=rna8684-protein|Name=rna8684|organism=Nannochloropsis gaditana|type=polypeptide|length=271bp
MRSHGLSFIGALVVAGLLPLSVLGNKPQAPLESRPGPNRTTECPYFFNPK
PSALTGIGNATTFGPLVDSVDYSLTFQKIRWGRNTWIQGRFYSNVQDLPI
EDVTFCNMLYNYTPGGLEYSPLYQGRVRFSPRVKGPQPQPVVYPNVSTPY
TTGDGFETVCVTVPYVKARGRQKVRFLYSSNICSTQVTFKGWVEFKNPFA
SLYPATAPATCEAAEVNSAPNTFNKVRTYGSDNRNIPVSCGTCTPGRNCK
GNRAAHTNRKDNRAERKAGKV
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mRNA from alignment at KK037249.1:586421..588216+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8684 ID=rna8684|Name=rna8684|organism=Nannochloropsis gaditana|type=mRNA|length=1796bp|location=Sequence derived from alignment at KK037249.1:586421..588216+ (Nannochloropsis gaditana)
CTACTATATTTCAGAGGTTGTCATTGCTTCTTGGTAACCACGCAAATCTC
TGTGCGGGCAAAACATCCACCACGGCATTCCTCGTTCtattcccttccct
ctctttctttcacaaGGTGACTTGGACACTTATTCTGATTAGATAGCATC
AAAATTAAAGTTATTCGCTCTGTCTTTTTGTCCGCTTTTTTGTCTAACAG
TTAGCTTCAAACGATGCGCTCTCACGGCCTCTCTTTCATCGGCgccctgg
tggtggcgggtcTGCTGCCTCTGTCCGTCCTGGGGAACAAACCGCAAGGT
AGACGTACAAGCCTTTCAAGCCACTCAGCGTGCAGGATGTCGCCCGTCAA
TACCGGCATTGCATTTTTGTCCTGTCTGGATGCATGCATGGGCCTGCGTA
CTGTCGATCAATGGCCTTTCCCTTaatctcttccctccccctctttcgca
CCCCCTCTGCCCTTCGCAGCCCCCCTTGAGTCCCGTCCCGGGCCCAACCG
CACCACGGAGTGTCCGTACTTCTTCAATCCCAAACCCAGCGCCTTGACTG
GCATCGGGAACGCCACCACGTTCGGGCCCCTGGTCGATTCGGTGGACTAC
TCACTCACGTTCCAGAAGATTCGGTGGGGCCGCAACACCTGGATCCAAGG
CCGCTTCTACAGCAATGTCCAAGACCTGCCCATCGAGGACGTGACCTTCT
GCAACATGCTGTACAACTACACGCCCGGGGGCCTCGAGTACAGCCCCCTG
TACCAGGGTCGTGTCCGATTCTCCCCGCGCGTGAAAGGCCCGCAGCCCCA
GCCCGTGGTCTACCCTAATGTGAGCACGCCGTACACCACGGGTGATGGCT
TCGAGACGGTCTGCGTCACCGTCCCCTACGTCAAGGCCCGTGGCAGGCAA
AAAGTCCGCTTTCTCTACTCGTCCAACATCTGCTCGACTCAGGTCACGTT
CAAGGGGTGGGTGGAGTTCAAGAACCCCTTCGCGTCCTTGTaccccgcca
ccgccccagCTACCTGCGAGGCTGCCGAGGTCAACTCTGCGCCCAATACC
TTCAACAAAGTCCGCACATACGGGGTAagtctttctctttcctgtccCTC
GGCAGCCCCTTCCCGGTTCGAGTCCGCGCGTgttccctcccaaccccccT
GTGCCCATTGAAAATGCGTCTGTGGTTAGCCGGAAGAAGGACCCCTTTCT
TGCTCGCCTTTCCCATTTGGACGGCGCATTCTTGTTGCACCATGTCCAAG
AACGGGAGGCTCAGGTCGCGCCTTCCACCCTGTCCTACAtagcccccccg
ccccccgccagTCGAACCAGTGCTTGTCAGAACGTTGCCCCGTGACCTAT
CTCatgaccctccccctcccccgctacCTCCCCCCAGTCCGACAACAGGA
ACATCCCTGTTAGCTGCGGGACCTGCACACCGGGCCGCAATTGCAAGGGG
AACCGGGCGGCGCACACGAACAGGAAGGACAACAGAGCCGAGCGCAAGGC
GGGCAAGGTCTAGGGCCCcggcctggaggggggggcaaggacacAAGACT
GTACTCTAGCATGTATTTCCTCCGGTAGCGCCAAGGGTCTAGAACCGAGG
AACGAAAGGGAGGTTTCTTTTGAGAGATAAGTACTAATAGGGCGATTGAG
TGAGGAGGCGACCAAGGGAGCCGTGGCGTCTCGGACCCGCTCAAGTCTAT
GATGGCGGTGTTTCCGCGCCGAATATGTTATTATGTTATTAAAGCAACAA
TCGATCGGGAGAAAAGATTCGGAAGGATAGGCCTAATCTCGCCACA
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Coding sequence (CDS) from alignment at KK037249.1:586421..588216+

>rna8684 ID=rna8684|Name=rna8684|organism=Nannochloropsis gaditana|type=CDS|length=2448bp|location=Sequence derived from alignment at KK037249.1:586421..588216+ (Nannochloropsis gaditana)
ATGCGCTCTCACGGCCTCTCTTTCATCGGCgccctggtggtggcgggtcT
GCTGCCTCTGTCCGTCCTGGGGAACAAACCGCAAGCCCCCCTTGAGTCCC
GTCCCGGGCCCAACCGCACCACGGAGTGTCCGTACTTCTTCAATCCCAAA
CCCAGCGCCTTGACTGGCATCGGGAACGCCACCACGTTCGGGCCCCTGGT
CGATTCGGTGGACTACTCACTCACGTTCCAGAAGATTCGGTGGGGCCGCA
ACACCTGGATCCAAGGCCGCTTCTACAGCAATGTCCAAGACCTGCCCATC
GAGGACGTGACCTTCTGCAACATGCTGTACAACTACACGCCCGGGGGCCT
CGAGTACAGCCCCCTGTACCAGGGTCGTGTCCGATTCTCCCCGCGCGTGA
AAGGCCCGCAGCCCCAGCCCGTGGTCTACCCTAATGTGAGCACGCCGTAC
ACCACGGGTGATGGCTTCGAGACGGTCTGCGTCACCGTCCCCTACGTCAA
GGCCCGTGGCAGGCAAAAAGTCCGCTTTCTCTACTCGTCCAACATCTGCT
CGACTCAGGTCACGTTCAAGGGGTGGGTGGAGTTCAAGAACCCCTTCGCG
TCCTTGTaccccgccaccgccccagCTACCTGCGAGGCTGCCGAGGTCAA
CTCTGCGCCCAATACCTTCAACAAAGTCCGCACATACGGGTCCGACAACA
GGAACATCCCTGTTAGCTGCGGGACCTGCACACCGGGCCGCAATTGCAAG
GGGAACCGGGCGGCGCACACGAACAGGAAGGACAACAGAGCCGAGCGCAA
GGCGGGCAAGGTCTAGATGCGCTCTCACGGCCTCTCTTTCATCGGCgccc
tggtggtggcgggtcTGCTGCCTCTGTCCGTCCTGGGGAACAAACCGCAA
GCCCCCCTTGAGTCCCGTCCCGGGCCCAACCGCACCACGGAGTGTCCGTA
CTTCTTCAATCCCAAACCCAGCGCCTTGACTGGCATCGGGAACGCCACCA
CGTTCGGGCCCCTGGTCGATTCGGTGGACTACTCACTCACGTTCCAGAAG
ATTCGGTGGGGCCGCAACACCTGGATCCAAGGCCGCTTCTACAGCAATGT
CCAAGACCTGCCCATCGAGGACGTGACCTTCTGCAACATGCTGTACAACT
ACACGCCCGGGGGCCTCGAGTACAGCCCCCTGTACCAGGGTCGTGTCCGA
TTCTCCCCGCGCGTGAAAGGCCCGCAGCCCCAGCCCGTGGTCTACCCTAA
TGTGAGCACGCCGTACACCACGGGTGATGGCTTCGAGACGGTCTGCGTCA
CCGTCCCCTACGTCAAGGCCCGTGGCAGGCAAAAAGTCCGCTTTCTCTAC
TCGTCCAACATCTGCTCGACTCAGGTCACGTTCAAGGGGTGGGTGGAGTT
CAAGAACCCCTTCGCGTCCTTGTaccccgccaccgccccagCTACCTGCG
AGGCTGCCGAGGTCAACTCTGCGCCCAATACCTTCAACAAAGTCCGCACA
TACGGGTCCGACAACAGGAACATCCCTGTTAGCTGCGGGACCTGCACACC
GGGCCGCAATTGCAAGGGGAACCGGGCGGCGCACACGAACAGGAAGGACA
ACAGAGCCGAGCGCAAGGCGGGCAAGGTCTAGATGCGCTCTCACGGCCTC
TCTTTCATCGGCgccctggtggtggcgggtcTGCTGCCTCTGTCCGTCCT
GGGGAACAAACCGCAAGCCCCCCTTGAGTCCCGTCCCGGGCCCAACCGCA
CCACGGAGTGTCCGTACTTCTTCAATCCCAAACCCAGCGCCTTGACTGGC
ATCGGGAACGCCACCACGTTCGGGCCCCTGGTCGATTCGGTGGACTACTC
ACTCACGTTCCAGAAGATTCGGTGGGGCCGCAACACCTGGATCCAAGGCC
GCTTCTACAGCAATGTCCAAGACCTGCCCATCGAGGACGTGACCTTCTGC
AACATGCTGTACAACTACACGCCCGGGGGCCTCGAGTACAGCCCCCTGTA
CCAGGGTCGTGTCCGATTCTCCCCGCGCGTGAAAGGCCCGCAGCCCCAGC
CCGTGGTCTACCCTAATGTGAGCACGCCGTACACCACGGGTGATGGCTTC
GAGACGGTCTGCGTCACCGTCCCCTACGTCAAGGCCCGTGGCAGGCAAAA
AGTCCGCTTTCTCTACTCGTCCAACATCTGCTCGACTCAGGTCACGTTCA
AGGGGTGGGTGGAGTTCAAGAACCCCTTCGCGTCCTTGTaccccgccacc
gccccagCTACCTGCGAGGCTGCCGAGGTCAACTCTGCGCCCAATACCTT
CAACAAAGTCCGCACATACGGGTCCGACAACAGGAACATCCCTGTTAGCT
GCGGGACCTGCACACCGGGCCGCAATTGCAAGGGGAACCGGGCGGCGCAC
ACGAACAGGAAGGACAACAGAGCCGAGCGCAAGGCGGGCAAGGTCTAG
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Synonyms
Publications