EWM22021.1, cds8652 (CDS) Nannochloropsis gaditana

Overview
NameEWM22021.1
Unique Namecds8652
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:579888..580116 -
Alignment locationKK037249.1:579724..579791 -
Alignment locationKK037249.1:579102..579359 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22021.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100959g1.5981.mrna
GbkeyCDS
End range.
End range580116
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:579888..580116 -
KK037249.1supercontigKK037249.1:579724..579791 -
KK037249.1supercontigKK037249.1:579102..579359 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Homology
[Close]
BLAST of EWM22021.1 vs. NCBI_GenBank
Match: gi|585102429|gb|EWM22021.1| (hypothetical protein Naga_100959g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 374.785 bits (961), Expect = 2.062e-131
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 
Query:    1 RGSKRGQGAGTLEVCSAAASWQWAPGFTLLHPLSFPAPLPYRQVFDSDDNKFIDPAEFKKTLQSLGFTGEGRPALTDEEIEFLFSTTDKDSNQMIDFKEFVDRFWELDLYQKEDGNFVPYLPRKDEEPPTLEAGASPFAPYPRRDDDYLFFGKSTPLDNVRTMKVGPPSACDTSFLPGTPEGAI 184
            RGSKRGQGAGTLEVCSAAASWQWAPGFTLLHPLSFPAPLPYRQVFDSDDNKFIDPAEFKKTLQSLGFTGEGRPALTDEEIEFLFSTTDKDSNQMIDFKEFVDRFWELDLYQKEDGNFVPYLPRKDEEPPTLEAGASPFAPYPRRDDDYLFFGKSTPLDNVRTMKVGPPSACDTSFLPGTPEGAI
Sbjct:    1 RGSKRGQGAGTLEVCSAAASWQWAPGFTLLHPLSFPAPLPYRQVFDSDDNKFIDPAEFKKTLQSLGFTGEGRPALTDEEIEFLFSTTDKDSNQMIDFKEFVDRFWELDLYQKEDGNFVPYLPRKDEEPPTLEAGASPFAPYPRRDDDYLFFGKSTPLDNVRTMKVGPPSACDTSFLPGTPEGAI 184
The following BLAST results are available for this feature:
BLAST of EWM22021.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585102429|gb|EWM22021.1|2.062e-131100.00hypothetical protein Naga_100959g1, partial [Nanno... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8681rna8681Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications