rna8681, rna8681 (mRNA) Nannochloropsis gaditana

Overview
Namerna8681
Unique Namerna8681
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1730
Alignment locationKK037249.1:578772..580116 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100959g1.5981.mrna
Orig protein idgnl|cribi|Naga_100959g1.5981
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:578772..580116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100959g1gene8414Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8681rna8681-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22021.1cds8652Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8681 ID=rna8681|Name=rna8681|organism=Nannochloropsis gaditana|type=mRNA|length=1730bp
CACAGGCATCACTCACAATGGTCTTCGCAAAGTGCCATCGTCCCTCACTA
CTCCCACGCGCCTGCGGCTGTGTTGAGGGGTCGCAGCCCCCGACGGGGAT
CGGAGCTTCTAGAAGTTGAAGTTGAGGATCGGCCGTTTCGGTGGGGAGGT
TAAAGCGTTTCCGCTTCTGGAATTTTCAGGCGCGTACATATGGTGTTCTC
TTTTGCATGTCTCCTGTGTTCTGTGCATGTATTTCGTGGATGTGCCGGGA
GCTTTTTTAATACGAACGATATGGCAATTCTTTAAGTGTGTTGACCGCTT
CGCTTTACGCACGAATGTGAACATTTTCCTTCTGTTGTTCTGTCTGCTTT
TTCTTGGAGTTCCGCATGCTATGTTCAACTTTCGCATGTTGGTATGTCTC
ATTCTCCCAAAGTTTGTTTCTCCATAATGTCTCTTTGCGGATAATGCCTA
GGTTAAGTGCTATCCTCTGCATCACATGCATATCGGGCGCGTAACTGTAT
GCTTGTAGGTGACTAGGAAGCCGGAAACTTGTAAATATTTTCACACGCGT
GCCAAACGAGTGTTCGCTACGTGTATCGTTTCTATGAGCTTACGAGATCA
GTGAGATGCGCGTTCGTGAGAGGCTGAGACGTCTCTTTTTCATCCAGACA
TTCCATTATCGCGGTCACATTTTCTTCTTATCTAAAAACATCGCTTCCAT
TCTATCTTCAATTATACACAGCAAAAAGCAAGCTTTCGCTACCTAACATA
CTTTCAAGCAACATGGCACTTTCTCGCTACTGGCGTGACGACCCCCTCGG
CTCCAACCTCATCGAGCGTGACCCTTTTGCCGACTTCTTCAGCACTGGAG
GCGGTTGGCTCACACCCAGTGTCGGTGGAGCTCTCAGCACGGGAACCAGC
CGCGGCCAGCCCGTTGTCCCCTCCTTGAACTTGGACGTGAAGGAGAAGAA
TAATGAGTTCCAGGTGGCCATCGACGCGCCAGGCATGAAAAAGGAAGACT
TTGACGTGACCTTCGACAACAATGTGCTGCGCGTGGCCTGTGAGCGCAAG
GAGGAGAAGGAGGAGGAGGACGCACGTTGGCACATTTCGGAGCGACGCTG
GGGATCCTCCTCCCGCTCAGTGCGCCTGCCCCGCACAGCGAACGGGGACG
GCATCACGGCGGAGTACGACTCCGGCGTTCTGAAGATCCACGTCCCCAAG
ACGCAAGAGAGTGAGACGCGCAAGACCATCCGCGTTTCTTAAACGGAAGG
AAGCCTCAGAAGCGTCGCTCCGGCAATTTGGTGTGCTTCATGCCTCGATA
TCAGATTAGGTGAAGATTAGACATAAGTAGGAGAATGAAATTGCACGTTA
CACAAGTTGTCGTATCCGATCAGCGAATTTGAAGACTTTCTAGAAGATTC
GAATGTGGTGTGATTTTGTCAAGGACGTGTGAGTTCACAGGAGGGCCGGA
TGTAGGAGACCCCGGGGATGACAGGAGATTAACGTTCGAAAAAGCATCAG
ACGGCAATACCGCCTGCGGGTGTGACAATCAGTAAAGAGGCATAGACACA
CTGAAATGCAATGCAAGACATCCATGGAGGGCTCACGTTGACAAGATTGC
GTATTTTGTTCTTTTGTGTTTCAAGTTGCCTCCGTTCATCACAGTCAATG
TTCACTCTATACAAGCCTTCGCCTTGACCTTCTGATCGTCTGGCCACCTG
TCCGCGCCCCTATCCCTTCAAGAGGTACTG
back to top

protein sequence of rna8681

>rna8681-protein ID=rna8681-protein|Name=rna8681|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
RGSKRGQGAGTLEVCSAAASWQWAPGFTLLHPLSFPAPLPYRQVFDSDDN
KFIDPAEFKKTLQSLGFTGEGRPALTDEEIEFLFSTTDKDSNQMIDFKEF
VDRFWELDLYQKEDGNFVPYLPRKDEEPPTLEAGASPFAPYPRRDDDYLF
FGKSTPLDNVRTMKVGPPSACDTSFLPGTPEGAI
back to top

mRNA from alignment at KK037249.1:578772..580116-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8681 ID=rna8681|Name=rna8681|organism=Nannochloropsis gaditana|type=mRNA|length=1345bp|location=Sequence derived from alignment at KK037249.1:578772..580116- (Nannochloropsis gaditana)
CGGGGAAGTAAGAGAGGTCAGGGCGCCGGGACCCTGGAAGTGTGCTCGGC
GGCAGCGTCTTGGCAATGGGCGCCGGGCTTCACCCTTCTTCATCCTCTTT
CATTCCCCGCGCCTCTACCCTACCGCCAGGTCTTCGACTCGGACGACAAC
AAGTTCATCGACCCCGCCGAGTTCAAAAAAACCTTACAGAGCCTCGGCTT
CACCGGGGAGGGACGGCCTGCGCTCACCGGTAAGGCGCCTGCCCCTCAGT
CTCACCGATTCCTCCCCCCTCCCTCCGTCTGTCCCTCCCGCCCTCCGACC
CCGTTCCTTCCCCTCCCTCCCCCAGACGAAGAGATCGAGTTTCTCTTCTC
GACCACGGACAAGGACTCGAATCAGATGATCGATTTCAAGGAGGTATAGA
GGGAGGGCGGGTGGGAATGTGGAGAGGGAGGCGGGCCGGCTGTGAACACG
CCGTAACAGCCTAGGGGGACGCTCCTACCGCCCGTCGTGACTCCCCTTAC
GCCTTCGTCCTCCCTCCCTCCCTTCCCTCCCCCCTCCTCTGGCTCTGCCA
TTGAATGGTCGCCCTCGAAGGAGGTATTGCTGTGGGACAGGGGGGAAAGC
CTCGCCCTCCTCTTGCGCCCGTGCCTTCCTCCCTGCATGGCCCATGGCAT
CCTTTCTCACCTTATGGCTCAGGTCCTTCCTGCCTCTCACGGGTTATCTG
ACTCGTGCTTGTCGATTCTCTCCCTCCCTCCCTCCCTCCCTCCCTTTCCC
CCTCCAGTTTGTGGACCGCTTCTGGGAGCTGGATCTCTACCAGAAGGAGG
ACGGGAACTTCGTTCCTTACCTCCCTCGCAAGGACGAGGAACCCCCCACC
TTGGAGGCTGGGGCCTCTCCATTTGCCCCCTACCCCCGCCGGGACGATGA
CTACCTCTTTTTTGGGAAGAGCACGCCCTTGGACAACGTCAGGACTATGA
AGGTGGGTCCTCCCTCTGCCTGCGACACCTCTTTCCTCCCCGGGACGCCA
GAGGGCGCGATTTGACTCATACACCTTGCCCTCCCCCGCAGGTCGTGGAC
GCTTTCATCGAGCCCCGGGAGATGGAGGAAGGTCGCTGGCCTGAGGAGTT
CGACCTCTCTGACCACGGCTTCCTGACTGCCCAGTACCTCTTGAAGGGAT
AGGGGCGCGGACAGGTGGCCAGACGATCAGAAGGTCAAGGCGAAGGCTTG
TATAGAGTGAACATTGACTGTGATGAACGGAGGCAACTTGAAACACAAAA
GAACAAAATACGCAATCTTGTCAACGTGAGCCCTCCATGGATGTCTTGCA
TTGCATTTCAGTGTGTCTATGCCTCTTTACTGATTGTCACACCCG
back to top

Coding sequence (CDS) from alignment at KK037249.1:578772..580116-

>rna8681 ID=rna8681|Name=rna8681|organism=Nannochloropsis gaditana|type=CDS|length=1665bp|location=Sequence derived from alignment at KK037249.1:578772..580116- (Nannochloropsis gaditana)
TTTGTGGACCGCTTCTGGGAGCTGGATCTCTACCAGAAGGAGGACGGGAA
CTTCGTTCCTTACCTCCCTCGCAAGGACGAGGAACCCCCCACCTTGGAGG
CTGGGGCCTCTCCATTTGCCCCCTACCCCCGCCGGGACGATGACTACCTC
TTTTTTGGGAAGAGCACGCCCTTGGACAACGTCAGGACTATGAAGGTGGG
TCCTCCCTCTGCCTGCGACACCTCTTTCCTCCCCGGGACGCCAGAGGGCG
CGATTTGAACGAAGAGATCGAGTTTCTCTTCTCGACCACGGACAAGGACT
CGAATCAGATGATCGATTTCAAGGAGCGGGGAAGTAAGAGAGGTCAGGGC
GCCGGGACCCTGGAAGTGTGCTCGGCGGCAGCGTCTTGGCAATGGGCGCC
GGGCTTCACCCTTCTTCATCCTCTTTCATTCCCCGCGCCTCTACCCTACC
GCCAGGTCTTCGACTCGGACGACAACAAGTTCATCGACCCCGCCGAGTTC
AAAAAAACCTTACAGAGCCTCGGCTTCACCGGGGAGGGACGGCCTGCGCT
CACCGTTTGTGGACCGCTTCTGGGAGCTGGATCTCTACCAGAAGGAGGAC
GGGAACTTCGTTCCTTACCTCCCTCGCAAGGACGAGGAACCCCCCACCTT
GGAGGCTGGGGCCTCTCCATTTGCCCCCTACCCCCGCCGGGACGATGACT
ACCTCTTTTTTGGGAAGAGCACGCCCTTGGACAACGTCAGGACTATGAAG
GTGGGTCCTCCCTCTGCCTGCGACACCTCTTTCCTCCCCGGGACGCCAGA
GGGCGCGATTTGAACGAAGAGATCGAGTTTCTCTTCTCGACCACGGACAA
GGACTCGAATCAGATGATCGATTTCAAGGAGCGGGGAAGTAAGAGAGGTC
AGGGCGCCGGGACCCTGGAAGTGTGCTCGGCGGCAGCGTCTTGGCAATGG
GCGCCGGGCTTCACCCTTCTTCATCCTCTTTCATTCCCCGCGCCTCTACC
CTACCGCCAGGTCTTCGACTCGGACGACAACAAGTTCATCGACCCCGCCG
AGTTCAAAAAAACCTTACAGAGCCTCGGCTTCACCGGGGAGGGACGGCCT
GCGCTCACCGTTTGTGGACCGCTTCTGGGAGCTGGATCTCTACCAGAAGG
AGGACGGGAACTTCGTTCCTTACCTCCCTCGCAAGGACGAGGAACCCCCC
ACCTTGGAGGCTGGGGCCTCTCCATTTGCCCCCTACCCCCGCCGGGACGA
TGACTACCTCTTTTTTGGGAAGAGCACGCCCTTGGACAACGTCAGGACTA
TGAAGGTGGGTCCTCCCTCTGCCTGCGACACCTCTTTCCTCCCCGGGACG
CCAGAGGGCGCGATTTGAACGAAGAGATCGAGTTTCTCTTCTCGACCACG
GACAAGGACTCGAATCAGATGATCGATTTCAAGGAGCGGGGAAGTAAGAG
AGGTCAGGGCGCCGGGACCCTGGAAGTGTGCTCGGCGGCAGCGTCTTGGC
AATGGGCGCCGGGCTTCACCCTTCTTCATCCTCTTTCATTCCCCGCGCCT
CTACCCTACCGCCAGGTCTTCGACTCGGACGACAACAAGTTCATCGACCC
CGCCGAGTTCAAAAAAACCTTACAGAGCCTCGGCTTCACCGGGGAGGGAC
GGCCTGCGCTCACCG
back to top
Synonyms
Publications