rna8670, rna8670 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8670
Unique Name	rna8670
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	885
Alignment location	KK037249.1:553624..555468 +

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Properties


Property Name	Value
Product	Endonuclease/exonuclease/phosphatase
Orig transcript id	gnl\|cribi\|Naga_100052g35.1161.mrna
Orig protein id	gnl\|cribi\|Naga_100052g35.1161
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:553624..555468 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100052g35	gene8403	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8670	rna8670-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22036.1	cds8643	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:553624..555468+
coding sequence from alignment at KK037249.1:553624..555468+

mRNA sequence

>rna8670 ID=rna8670|Name=rna8670|organism=Nannochloropsis gaditana|type=mRNA|length=885bp
ACAACTTTCGCACGACGGAAACGTGAGGAATTAAGAGTGGTTTTGCATTG
ATAAGTAGCATGCGAGTTTCTAATTTTTACACCTTCTGTAGACATGTATG
TCTCGACTTGGTAGCCTACGGCAACTAGCCTGCTGCCCACCTGTCCTCAC
AGCCTCAGGGTGACGGAGGCGGGATAACCTTGGGGAAAGGTTTGCGAAAC
GGGACAGAAGCTGTGGTGCTAGGCTTACCAAGAATACAATTAGAGGCCGA
CTCAACAGGATCGGACGGGAAATTGGTGTGTGCTGGTTTACTGTTTCAAC
TGACCGGCAGACGTTCATCCCATTTCAACAGATTGTAATCGACGTCTCAA
TGTATGGTGCCTCGTTATGTTATGCTCGTGGTATGACCTGGCGGACAATA
AACACGATCGCGCCCCAACAAACTACGAAAGCGGGGACCCTGTCAGTTCC
AAGAAGGCGCTTAGATACTGCCTTGTATGCTTACCGACTATTCTCTGAGG
CTCGATACAACTCTCCACGCCCTGATACGGCCACGCCTCAGTCCACGTTG
CGGCATGCCACACTTTCGCTTTTGAACGAGGCAGAAGGCAAACCCCTGCA
CAACCGTGATATCTACAAAGGCCTGCAAGACTCCTTGCCCGCCGAGTCAC
ATCTTAAGGAGCGACTTACTCTGACCTATTTGAAGACAAAAATTTTACGG
CATTTGCGGGAAAAAAAGTACATACGATCTGTAGCCGTGTGGACGGAAGG
TAAGAAGAGGGCATCGTACGGCTACGTCGTAAGCAGGCTACCGAAAGACT
TCAAGGAATCAAAGTCAGAAATGAAAGACGAAGAGTAACACTTCATAAAT
AAAAGCAAGATGTTTTGAAAGAGCAAAAATCGATT

protein sequence of rna8670

>rna8670-protein ID=rna8670-protein|Name=rna8670|organism=Nannochloropsis gaditana|type=polypeptide|length=411bp
MPVKYCSPQQTRARPVAKLWSGLGRLRCVFLFMLTTFLSRGRQSARACRV
VGLLTMSTSTSSSSFAPPKKLRMVTYNILTPSYSTPKSLPAHPSIYLNEQ
ERLEKILEKLEPEIAQGAVIALQEVSRAWAGHLHVFFSRAGYHFVHSEYG
RPSSGFMGVGLAWPQSTLEAVDIEISRLADAKPWPAAPSPGPLSSFSHRL
FRPFRKIWGLQAGREEDVLASARDRSNVVIVANLRSKQASPQDMDFFVAC
YHMPCEFRRPSIMTVHAALLVQRMQALAGSKPHIVAGDFNFQPSWPQYRI
ITEGDIEAAHPHYPPLPPSDPWLPHVDQPLRSALRVKWGKEPDFTCYSYA
DRESGERFCAPLDYIFVSSEWKVEDAIKLQSKDEALKMPCPFPNQDEPSD
HVLLWADLSLP

mRNA from alignment at KK037249.1:553624..555468+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8670 ID=rna8670|Name=rna8670|organism=Nannochloropsis gaditana|type=mRNA|length=1845bp|location=Sequence derived from alignment at KK037249.1:553624..555468+ (Nannochloropsis gaditana)
TGACACAGCAGGACCACTTGCGAATCAAATGCGGCTGGCGCGACAATCTC
TTGCTTGATGCCCGTGAAGTATTGCTCTCCACAGCAAACCCGTGCAAGGC
CAGTCGCAAAACTCTGGTCAGGCCTTGGCCGTTTGCGCTgcgtcttcctt
ttcatgtTGACAACATTTTTGAGTCGAGGCAGGCAAAGTGCTCGAGCGTG
TCGCGTCGTCGGTCTTCTCACCATGTCCACgtctacctcctcgtcttcct
ttgCTCCGCCCAAGAAGCTCCGAATGGTTACGTACAACATCCTGACGCCA
AGCTATTCGACGCCAAAGAGTTTACCGGTGTGTATTCTtcaatttctttt
cttcttatCTCTACTTTGCCGTCTCGCGCTATGGCTAAAAATCAATGTCG
GGAGAAGACCGGAATGCTGAATAAAGGTTGCCTTCGACCCCCCTCTGTGA
CTCTCAATCTTGCTCCGTATTCCGATCTCTTTTCAGGCTCACCCATCCAT
CTATCTAAATGAACAAGAGCGACTGGAAAAGATCCTGGAGAAGCTCGAAC
CAGAAATCGCGCAAGGAGCAGTCATCGCGCTCCAAGAGGTGTcgagggcc
tgggcgggcCATTTacatgtttttttttcgcGGGCTGGATACCACTTTGT
GCACTCAGAGTACGGGCGGCCTTCGAGTGGCTTCATGGGCGTGGGATTGG
CCTGGCCGCAAAGCACCCTGGAGGCAGTCGACATTGAAATATCTCGCCTT
GCCGACGCCAAGCCCTGGCCTGCCGCACCGTcgcccggccccctctcctc
cttctcccaccggCTCTTTCGCCCGTTTCGAAAGATTTGGGGATTGCAGG
CGGGtcgcgaggaggacgtgttGGCCTCAGCGCGGGATCGGTCCAACGTG
GTCATCGTTGCCAACCTCCGAAGCAAGCAAGCATCGCCGCAGGACATGGA
CTTCTTCGTTGCGTGCTACCACATGCCATGCGAGTTTCGGCGACCGTCAA
TCATGACAGTGCACGCCGCACTGCTGGTGCAGCGGATGCAGGCTCTGGCA
GGGTCGAAACCCCACATCGTGGCGGTAAGTTCCATCGGCAGAGGAATATG
GAGTGATAGGTCATGATCACCTGCCGCGACCCGCAGGGCCTCTGTTTTCT
CACGTCGCATGTGAATGCTACAGGGTGACTTCAATTTCCAGCCTTCCTGG
CCGCAGTATCGAATTATTACAGAGGGGGATATTGAAGCCGCCCATCCTCA
CTATCCCCCACTGCCTCCGAGTGACCCATGGCTTCCGCACGTCGACCAAC
CTCTTCGCTCTGCCTTGAGGGTCAAGTGGGGCAAGGAGCCGGACTTTACC
TGCTATTCTTACGCGGACAGGGTAGGGCGTGGAGATTGCGTGAAGCCCCG
GGAGCCTtggggggcggtggcaaTAAAATACCAAAAGCTCATTTATTCTG
GCACACAGGAGTCTGGTGAGCGGTTTTGCGCCCCGTTGGATTACATATTT
GTGTCGTCGGAATGGAAGGTCGAGGACGCAATCAAGCTTCAGTCCAAGGA
CGAGGCGTTGAAGATGccatgccccttccccaacCAGGTAAGTAAACAGA
AGGAATTGAATCAACAGCAACAGTCATGAAGAGCAGATCTTAAAATGAAT
CGCGAATTTATGAATAGGAATAATGACACATTTCTCGTTGAATATCTCAC
ACAGGACGAGCCGTCCGATCACGTGTTGCTATGGGCCGACTTGAGTCTCC
CGTAGTACAACCCTGTGAAATTGTGTCTGGCATTGAACGACGAAAACATG
AAATttgaaagaaaagcaaagtTAGACCTAGTGTCAAGCCGCATA

Coding sequence (CDS) from alignment at KK037249.1:553624..555468+

>rna8670 ID=rna8670|Name=rna8670|organism=Nannochloropsis gaditana|type=CDS|length=6180bp|location=Sequence derived from alignment at KK037249.1:553624..555468+ (Nannochloropsis gaditana)
ATGCCCGTGAAGTATTGCTCTCCACAGCAAACCCGTGCAAGGCCAGTCGC
AAAACTCTGGTCAGGCCTTGGCCGTTTGCGCTgcgtcttccttttcatgt
TGACAACATTTTTGAGTCGAGGCAGGCAAAGTGCTCGAGCGTGTCGCGTC
GTCGGTCTTCTCACCATGTCCACgtctacctcctcgtcttcctttgCTCC
GCCCAAGAAGCTCCGAATGGTTACGTACAACATCCTGACGCCAAGCTATT
CGACGCCAAAGAGTTTACCGGCTCACCCATCCATCTATCTAAATGAACAA
GAGCGACTGGAAAAGATCCTGGAGAAGCTCGAACCAGAAATCGCGCAAGG
AGCAGTCATCGCGCTCCAAGAGGTGTcgagggcctgggcgggcCATTTac
atgtttttttttcgcGGGCTGGATACCACTTTGTGCACTCAGAGTACGGG
CGGCCTTCGAGTGGCTTCATGGGCGTGGGATTGGCCTGGCCGCAAAGCAC
CCTGGAGGCAGTCGACATTGAAATATCTCGCCTTGCCGACGCCAAGCCCT
GGCCTGCCGCACCGTcgcccggccccctctcctccttctcccaccggCTC
TTTCGCCCGTTTCGAAAGATTTGGGGATTGCAGGCGGGtcgcgaggagga
cgtgttGGCCTCAGCGCGGGATCGGTCCAACGTGGTCATCGTTGCCAACC
TCCGAAGCAAGCAAGCATCGCCGCAGGACATGGACTTCTTCGTTGCGTGC
TACCACATGCCATGCGAGTTTCGGCGACCGTCAATCATGACAGTGCACGC
CGCACTGCTGGTGCAGCGGATGCAGGCTCTGGCAGGGTCGAAACCCCACA
TCGTGGCGGGTGACTTCAATTTCCAGCCTTCCTGGCCGCAGTATCGAATT
ATTACAGAGGGGGATATTGAAGCCGCCCATCCTCACTATCCCCCACTGCC
TCCGAGTGACCCATGGCTTCCGCACGTCGACCAACCTCTTCGCTCTGCCT
TGAGGGTCAAGTGGGGCAAGGAGCCGGACTTTACCTGCTATTCTTACGCG
GACAGGGAGTCTGGTGAGCGGTTTTGCGCCCCGTTGGATTACATATTTGT
GTCGTCGGAATGGAAGGTCGAGGACGCAATCAAGCTTCAGTCCAAGGACG
AGGCGTTGAAGATGccatgccccttccccaacCAGGACGAGCCGTCCGAT
CACGTGTTGCTATGGGCCGACTTGAGTCTCCCGTAGATGCCCGTGAAGTA
TTGCTCTCCACAGCAAACCCGTGCAAGGCCAGTCGCAAAACTCTGGTCAG
GCCTTGGCCGTTTGCGCTgcgtcttccttttcatgtTGACAACATTTTTG
AGTCGAGGCAGGCAAAGTGCTCGAGCGTGTCGCGTCGTCGGTCTTCTCAC
CATGTCCACgtctacctcctcgtcttcctttgCTCCGCCCAAGAAGCTCC
GAATGGTTACGTACAACATCCTGACGCCAAGCTATTCGACGCCAAAGAGT
TTACCGGCTCACCCATCCATCTATCTAAATGAACAAGAGCGACTGGAAAA
GATCCTGGAGAAGCTCGAACCAGAAATCGCGCAAGGAGCAGTCATCGCGC
TCCAAGAGGTGTcgagggcctgggcgggcCATTTacatgtttttttttcg
cGGGCTGGATACCACTTTGTGCACTCAGAGTACGGGCGGCCTTCGAGTGG
CTTCATGGGCGTGGGATTGGCCTGGCCGCAAAGCACCCTGGAGGCAGTCG
ACATTGAAATATCTCGCCTTGCCGACGCCAAGCCCTGGCCTGCCGCACCG
TcgcccggccccctctcctccttctcccaccggCTCTTTCGCCCGTTTCG
AAAGATTTGGGGATTGCAGGCGGGtcgcgaggaggacgtgttGGCCTCAG
CGCGGGATCGGTCCAACGTGGTCATCGTTGCCAACCTCCGAAGCAAGCAA
GCATCGCCGCAGGACATGGACTTCTTCGTTGCGTGCTACCACATGCCATG
CGAGTTTCGGCGACCGTCAATCATGACAGTGCACGCCGCACTGCTGGTGC
AGCGGATGCAGGCTCTGGCAGGGTCGAAACCCCACATCGTGGCGGGTGAC
TTCAATTTCCAGCCTTCCTGGCCGCAGTATCGAATTATTACAGAGGGGGA
TATTGAAGCCGCCCATCCTCACTATCCCCCACTGCCTCCGAGTGACCCAT
GGCTTCCGCACGTCGACCAACCTCTTCGCTCTGCCTTGAGGGTCAAGTGG
GGCAAGGAGCCGGACTTTACCTGCTATTCTTACGCGGACAGGGAGTCTGG
TGAGCGGTTTTGCGCCCCGTTGGATTACATATTTGTGTCGTCGGAATGGA
AGGTCGAGGACGCAATCAAGCTTCAGTCCAAGGACGAGGCGTTGAAGATG
ccatgccccttccccaacCAGGACGAGCCGTCCGATCACGTGTTGCTATG
GGCCGACTTGAGTCTCCCGTAGATGCCCGTGAAGTATTGCTCTCCACAGC
AAACCCGTGCAAGGCCAGTCGCAAAACTCTGGTCAGGCCTTGGCCGTTTG
CGCTgcgtcttccttttcatgtTGACAACATTTTTGAGTCGAGGCAGGCA
AAGTGCTCGAGCGTGTCGCGTCGTCGGTCTTCTCACCATGTCCACgtcta
cctcctcgtcttcctttgCTCCGCCCAAGAAGCTCCGAATGGTTACGTAC
AACATCCTGACGCCAAGCTATTCGACGCCAAAGAGTTTACCGGCTCACCC
ATCCATCTATCTAAATGAACAAGAGCGACTGGAAAAGATCCTGGAGAAGC
TCGAACCAGAAATCGCGCAAGGAGCAGTCATCGCGCTCCAAGAGGTGTcg
agggcctgggcgggcCATTTacatgtttttttttcgcGGGCTGGATACCA
CTTTGTGCACTCAGAGTACGGGCGGCCTTCGAGTGGCTTCATGGGCGTGG
GATTGGCCTGGCCGCAAAGCACCCTGGAGGCAGTCGACATTGAAATATCT
CGCCTTGCCGACGCCAAGCCCTGGCCTGCCGCACCGTcgcccggccccct
ctcctccttctcccaccggCTCTTTCGCCCGTTTCGAAAGATTTGGGGAT
TGCAGGCGGGtcgcgaggaggacgtgttGGCCTCAGCGCGGGATCGGTCC
AACGTGGTCATCGTTGCCAACCTCCGAAGCAAGCAAGCATCGCCGCAGGA
CATGGACTTCTTCGTTGCGTGCTACCACATGCCATGCGAGTTTCGGCGAC
CGTCAATCATGACAGTGCACGCCGCACTGCTGGTGCAGCGGATGCAGGCT
CTGGCAGGGTCGAAACCCCACATCGTGGCGGGTGACTTCAATTTCCAGCC
TTCCTGGCCGCAGTATCGAATTATTACAGAGGGGGATATTGAAGCCGCCC
ATCCTCACTATCCCCCACTGCCTCCGAGTGACCCATGGCTTCCGCACGTC
GACCAACCTCTTCGCTCTGCCTTGAGGGTCAAGTGGGGCAAGGAGCCGGA
CTTTACCTGCTATTCTTACGCGGACAGGGAGTCTGGTGAGCGGTTTTGCG
CCCCGTTGGATTACATATTTGTGTCGTCGGAATGGAAGGTCGAGGACGCA
ATCAAGCTTCAGTCCAAGGACGAGGCGTTGAAGATGccatgccccttccc
caacCAGGACGAGCCGTCCGATCACGTGTTGCTATGGGCCGACTTGAGTC
TCCCGTAGATGCCCGTGAAGTATTGCTCTCCACAGCAAACCCGTGCAAGG
CCAGTCGCAAAACTCTGGTCAGGCCTTGGCCGTTTGCGCTgcgtcttcct
tttcatgtTGACAACATTTTTGAGTCGAGGCAGGCAAAGTGCTCGAGCGT
GTCGCGTCGTCGGTCTTCTCACCATGTCCACgtctacctcctcgtcttcc
tttgCTCCGCCCAAGAAGCTCCGAATGGTTACGTACAACATCCTGACGCC
AAGCTATTCGACGCCAAAGAGTTTACCGGCTCACCCATCCATCTATCTAA
ATGAACAAGAGCGACTGGAAAAGATCCTGGAGAAGCTCGAACCAGAAATC
GCGCAAGGAGCAGTCATCGCGCTCCAAGAGGTGTcgagggcctgggcggg
cCATTTacatgtttttttttcgcGGGCTGGATACCACTTTGTGCACTCAG
AGTACGGGCGGCCTTCGAGTGGCTTCATGGGCGTGGGATTGGCCTGGCCG
CAAAGCACCCTGGAGGCAGTCGACATTGAAATATCTCGCCTTGCCGACGC
CAAGCCCTGGCCTGCCGCACCGTcgcccggccccctctcctccttctccc
accggCTCTTTCGCCCGTTTCGAAAGATTTGGGGATTGCAGGCGGGtcgc
gaggaggacgtgttGGCCTCAGCGCGGGATCGGTCCAACGTGGTCATCGT
TGCCAACCTCCGAAGCAAGCAAGCATCGCCGCAGGACATGGACTTCTTCG
TTGCGTGCTACCACATGCCATGCGAGTTTCGGCGACCGTCAATCATGACA
GTGCACGCCGCACTGCTGGTGCAGCGGATGCAGGCTCTGGCAGGGTCGAA
ACCCCACATCGTGGCGGGTGACTTCAATTTCCAGCCTTCCTGGCCGCAGT
ATCGAATTATTACAGAGGGGGATATTGAAGCCGCCCATCCTCACTATCCC
CCACTGCCTCCGAGTGACCCATGGCTTCCGCACGTCGACCAACCTCTTCG
CTCTGCCTTGAGGGTCAAGTGGGGCAAGGAGCCGGACTTTACCTGCTATT
CTTACGCGGACAGGGAGTCTGGTGAGCGGTTTTGCGCCCCGTTGGATTAC
ATATTTGTGTCGTCGGAATGGAAGGTCGAGGACGCAATCAAGCTTCAGTC
CAAGGACGAGGCGTTGAAGATGccatgccccttccccaacCAGGACGAGC
CGTCCGATCACGTGTTGCTATGGGCCGACTTGAGTCTCCCGTAGATGCCC
GTGAAGTATTGCTCTCCACAGCAAACCCGTGCAAGGCCAGTCGCAAAACT
CTGGTCAGGCCTTGGCCGTTTGCGCTgcgtcttccttttcatgtTGACAA
CATTTTTGAGTCGAGGCAGGCAAAGTGCTCGAGCGTGTCGCGTCGTCGGT
CTTCTCACCATGTCCACgtctacctcctcgtcttcctttgCTCCGCCCAA
GAAGCTCCGAATGGTTACGTACAACATCCTGACGCCAAGCTATTCGACGC
CAAAGAGTTTACCGGCTCACCCATCCATCTATCTAAATGAACAAGAGCGA
CTGGAAAAGATCCTGGAGAAGCTCGAACCAGAAATCGCGCAAGGAGCAGT
CATCGCGCTCCAAGAGGTGTcgagggcctgggcgggcCATTTacatgttt
ttttttcgcGGGCTGGATACCACTTTGTGCACTCAGAGTACGGGCGGCCT
TCGAGTGGCTTCATGGGCGTGGGATTGGCCTGGCCGCAAAGCACCCTGGA
GGCAGTCGACATTGAAATATCTCGCCTTGCCGACGCCAAGCCCTGGCCTG
CCGCACCGTcgcccggccccctctcctccttctcccaccggCTCTTTCGC
CCGTTTCGAAAGATTTGGGGATTGCAGGCGGGtcgcgaggaggacgtgtt
GGCCTCAGCGCGGGATCGGTCCAACGTGGTCATCGTTGCCAACCTCCGAA
GCAAGCAAGCATCGCCGCAGGACATGGACTTCTTCGTTGCGTGCTACCAC
ATGCCATGCGAGTTTCGGCGACCGTCAATCATGACAGTGCACGCCGCACT
GCTGGTGCAGCGGATGCAGGCTCTGGCAGGGTCGAAACCCCACATCGTGG
CGGGTGACTTCAATTTCCAGCCTTCCTGGCCGCAGTATCGAATTATTACA
GAGGGGGATATTGAAGCCGCCCATCCTCACTATCCCCCACTGCCTCCGAG
TGACCCATGGCTTCCGCACGTCGACCAACCTCTTCGCTCTGCCTTGAGGG
TCAAGTGGGGCAAGGAGCCGGACTTTACCTGCTATTCTTACGCGGACAGG
GAGTCTGGTGAGCGGTTTTGCGCCCCGTTGGATTACATATTTGTGTCGTC
GGAATGGAAGGTCGAGGACGCAATCAAGCTTCAGTCCAAGGACGAGGCGT
TGAAGATGccatgccccttccccaacCAGGACGAGCCGTCCGATCACGTG
TTGCTATGGGCCGACTTGAGTCTCCCGTAG

Synonyms

Publications