rna8659, rna8659 (mRNA) Nannochloropsis gaditana

Overview
Namerna8659
Unique Namerna8659
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1261
Alignment locationKK037249.1:527483..528745 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100052g23.1166.mrna
Orig protein idgnl|cribi|Naga_100052g23.1166
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:527483..528745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100052g23gene8392Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8659rna8659-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22041.1cds8632Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8659 ID=rna8659|Name=rna8659|organism=Nannochloropsis gaditana|type=mRNA|length=1261bp
ACTCGGCTCGATGCCTAATCTTCAACATCCTCCCCTGCACCACCTTTCAA
GGTCTTCAAGATGTGGCAGGAGGGTGCGCAGGCTGGAAAAGCTCGGTGGC
TGTGGACTCTCCTTCTCATATTGCTTACGACGACCAGCCTACAGAGCACT
AGGCTCGAAGCCCCTCAGCAACCTCCCTCCAAATTGTCTTTGAAACGACG
ATCCCCGTGCCGAAGCGAAGCAACAAAGCGTCTTAAAAATCGATCCTATG
CGTCCTCATGCGGTTATGTGTTCGATAGTCATCAATCTTTTGGGCCGCCG
GGAAAAAATGGAGGGCAGACGAATCCAGTTCGGTGGCTGGCGCGAGCAAG
AGGCGGAGTGCAGCCTGCCCAAAAAAAAAGCAAGGTCAAGGCGAATGGTC
CAGCTGCGCAGGGCAATAAAATTAGATACGCGAAAGAGGCGAGCACAAAG
CAGAAGGTCAAGGAGTGGTATCAGGCAACGCCGCTCGTCACTCGCCTGCA
CCTCACTGCCTCCCTGGTACTCACTGGCCTCGGCATCATCATCCTAGACC
CCGCCTACTTCCTACTCGATCCCGTCCGTACCATTACCAAGGCTCAGATT
TGGCGACCTTTCACGGCCGCTGCCTTTCTAGGGCCCCCGTCCATGAGCTG
GGTCTCCAACCTCTACTTCCTGCACCAGTACGGAACTGCATTAGAGAAAT
CACAAGGGACTGCACAGCAGCTAGTGTTCCTCTTATTCAATATCGGCGTG
CTGAGCGTCCTGGGGTCATTGATGGGTCTGCCTATTACAAGCAATGCCCT
GATAACCGCAGCCTTGCACTGTCTCGGTCGTCAGGATCCCCTGCGAGATG
TGAACTGGATGTTTTCGATCAAGATCAAGTATTGGATGCTGCCCTTCTGC
CTAGCCCTCGTGGACATGCTGCAGGCACAAAATCCTTTGGCCGCCCTTCC
GGCGGCTCTGGGTATTCTTAGTGGTCACATGTACTATTTCTTACGGCAAG
TGTGGCCCAAGATGGGGCACAGAGAGTTGCTGTTGGCGCCAGAGTGGTTA
TGCAAGGTATTAAATCGCCACAACGATGATGTCATTTTCCAGAGAAGAAA
CAAGCCTCTCGTTACCACCGGCGCCAGTAGCTCGGAGGGGGAGAGCGGGG
TATTGCCGAACCTATCATCAGTCTTGAAAAAGAAGAGCAAGGTTTACAAA
ATGAAAAAGACGCCATCCTAAATCATTAAGCACAAATGAAAAGTATACGA
CTAAGAGACGG
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protein sequence of rna8659

>rna8659-protein ID=rna8659-protein|Name=rna8659|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MPPEEGTTGISAAGPPTASSEGPHQTEPAQSRSSATLNAVQAFVALSLNA
PLSGSLGHNMRTSVRQIEQPRPNQRLQTQTSPTHRTLPLNEAVPSTRAHT
PPPLTHLCMATIADNCSGLVSVNGLAEELCIRILREILLRGKLDYRLCRV
FIESGHEELSKAVSSLNLFDALGCGRPSGGAGLGSDCRR
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mRNA from alignment at KK037249.1:527483..528745+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8659 ID=rna8659|Name=rna8659|organism=Nannochloropsis gaditana|type=mRNA|length=1263bp|location=Sequence derived from alignment at KK037249.1:527483..528745+ (Nannochloropsis gaditana)
AGCAATATGAGAAGGAGAGTCCACAGCCACCGAGCTTTTCCAGCCTGCGC
ACCCTCCTGCCACATCTTGAAGACCTTGAAAGGTGGTGCAGGGGAGGATG
TTGAAGATTAGGCATCGAGCCGAGTTACCAGCCCGGTGAGGTCGAGGGCC
GTCGAGGAGGCCCACCATCCTGCGATATCCTcgctcatcatcatcatcgc
caCACTCCCATGCGGCCCACGGCCTGGTCGACGCGAAGGCTTGAGACGCA
CAGCCGGTGTCACATAAATATAGAGGGGCACGAGGCTGTGCCTTTACCAA
GTGTTCGAtacttctcctttctcggcCATGCATATCatgtttcctcttct
ttgcatcGCAGGAGagggcccgccctccccctccatgcggGGAATTGAGC
CTCAAGCACAGCAAGACTCATTCTGAACTCCCGAAATCCAGCTATCGACT
CTGTTCACTCTTCCGTCATGCctccggaggaggggacgacggGGATCTCT
GCGGCAGGACCACCAACTGCAAGTTCTGAGGGCCCACACCAAACTGAACC
GGCGCAATCGAGGAGCAGTGCCACTCTAAATGCTGTCCAAGCTTTCGTTG
CGTTGAGTCTAAATGCTCCTCTATCGGGTAGCCTTGGACACAACATGAGG
ACAAGCGTCCGCCAAATTGAGCAGCCAAGACCAAATCAGCGGCTCCAGAC
ACAGACCTCGCCTACACATCGTACCTTGCCTCTAAACGAAGCTGTCCCCT
CCACGCGCGCACATACCCCGCCCCCTCTTACTCACTTATGCATGGCCACC
ATTGCTGATAATTGCTCGGGATTGGTTTCTGTGAATGGTTTGGCCGAGGA
ACTCTGCATACGCATATTACGAGAGATCCTGCTCCGGGGCAAGCTAGATT
ACCGCTTGTGCCGTGTCTTCATCGAAAGCGGCCATGAAGAGCTTAGCAAG
GCTGTGTCTAGCCTCAATCTCTTCGACGCGCTGGGATGTGGCAGGCCAtc
gggaggagcaggccttggATCAGATTGTCGGCGTTGAAACTGTGGTCAAC
GTCGCGGTGTTGTGTGATGTAAATAGAGTGCAAAGGCCCCAAGACGGAGG
TCTTCAGCACGCGGAGCGACAAACACATGGAGCAGATCATctcaagcagg
agggagcatTCATTTGCTTGAAGAGCTGAAACACTCGGTACTACCACATG
CGCTAACGGGTGAGGTATAATCAGAAGCGAAGTAAAATAATATATCGAat
tgatttttttttg
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Coding sequence (CDS) from alignment at KK037249.1:527483..528745+

>rna8659 ID=rna8659|Name=rna8659|organism=Nannochloropsis gaditana|type=CDS|length=570bp|location=Sequence derived from alignment at KK037249.1:527483..528745+ (Nannochloropsis gaditana)
ATGCctccggaggaggggacgacggGGATCTCTGCGGCAGGACCACCAAC
TGCAAGTTCTGAGGGCCCACACCAAACTGAACCGGCGCAATCGAGGAGCA
GTGCCACTCTAAATGCTGTCCAAGCTTTCGTTGCGTTGAGTCTAAATGCT
CCTCTATCGGGTAGCCTTGGACACAACATGAGGACAAGCGTCCGCCAAAT
TGAGCAGCCAAGACCAAATCAGCGGCTCCAGACACAGACCTCGCCTACAC
ATCGTACCTTGCCTCTAAACGAAGCTGTCCCCTCCACGCGCGCACATACC
CCGCCCCCTCTTACTCACTTATGCATGGCCACCATTGCTGATAATTGCTC
GGGATTGGTTTCTGTGAATGGTTTGGCCGAGGAACTCTGCATACGCATAT
TACGAGAGATCCTGCTCCGGGGCAAGCTAGATTACCGCTTGTGCCGTGTC
TTCATCGAAAGCGGCCATGAAGAGCTTAGCAAGGCTGTGTCTAGCCTCAA
TCTCTTCGACGCGCTGGGATGTGGCAGGCCAtcgggaggagcaggccttg
gATCAGATTGTCGGCGTTGA
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Synonyms
Publications