EWM22064.1, cds8604 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|585102480|gb|EWM22064.1| (nucleosome-remodeling factor subunit, putative [Nannochloropsis gaditana]) HSP 1 Score: 1327 bits (3433), Expect = 0.000e+0 Identity = 655/655 (100.00%), Postives = 655/655 (100.00%), Query Frame = 0 Query: 1 MAADGAEAATIILRSLPGRERTSLIPSPTRKRKGTHSSTRVPYTGTASFPSSSSPSSPSSSPSTAVAASFSSSSSQGSDQSVISSSRSASGSCTSCSSGSGGEEEEEHQGDASFPPHHETRAGPTVPRATQPNACIPSGTSRSRKSTSVPMEAPTMEAQGLARVEVKEEHRNGSTDGEARDNGGVRVRSVRRSQTRGMLEGTGEVLVKDGNNGRGEGGGDGGGRVPEGGEEGDGLPSIPAPAKAPREGAMYQVEEGKIPPVRPWARLAPADVAAVAKAGLAWSPEDVDPGQARALASALAALRDRDGRLEADDKQGDGVGKGKAKAEESGLRGEAMELGWMVLRATGNVVRAVETAVDANRRMAWSQEEEALFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAWKADRPLQYLEHAIPDYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPEDFSCSQCQAQYLTTSERERAKRWVESKVRKVQTLREKEMQRLSGAPAGYIGRRRTKGTREGGREGGRRGGQKREESSLKSGTHSRKPGSPSLRDLRGLYLTQRARVNGAGSASVRTVLPRLSRQPPARALALASSPPPRQPHCLPLPSPSFHPPHASCPPPRNLLVPFVNPWAPAPPGLEKADAFD 655 MAADGAEAATIILRSLPGRERTSLIPSPTRKRKGTHSSTRVPYTGTASFPSSSSPSSPSSSPSTAVAASFSSSSSQGSDQSVISSSRSASGSCTSCSSGSGGEEEEEHQGDASFPPHHETRAGPTVPRATQPNACIPSGTSRSRKSTSVPMEAPTMEAQGLARVEVKEEHRNGSTDGEARDNGGVRVRSVRRSQTRGMLEGTGEVLVKDGNNGRGEGGGDGGGRVPEGGEEGDGLPSIPAPAKAPREGAMYQVEEGKIPPVRPWARLAPADVAAVAKAGLAWSPEDVDPGQARALASALAALRDRDGRLEADDKQGDGVGKGKAKAEESGLRGEAMELGWMVLRATGNVVRAVETAVDANRRMAWSQEEEALFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAWKADRPLQYLEHAIPDYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPEDFSCSQCQAQYLTTSERERAKRWVESKVRKVQTLREKEMQRLSGAPAGYIGRRRTKGTREGGREGGRRGGQKREESSLKSGTHSRKPGSPSLRDLRGLYLTQRARVNGAGSASVRTVLPRLSRQPPARALALASSPPPRQPHCLPLPSPSFHPPHASCPPPRNLLVPFVNPWAPAPPGLEKADAFD Sbjct: 1 MAADGAEAATIILRSLPGRERTSLIPSPTRKRKGTHSSTRVPYTGTASFPSSSSPSSPSSSPSTAVAASFSSSSSQGSDQSVISSSRSASGSCTSCSSGSGGEEEEEHQGDASFPPHHETRAGPTVPRATQPNACIPSGTSRSRKSTSVPMEAPTMEAQGLARVEVKEEHRNGSTDGEARDNGGVRVRSVRRSQTRGMLEGTGEVLVKDGNNGRGEGGGDGGGRVPEGGEEGDGLPSIPAPAKAPREGAMYQVEEGKIPPVRPWARLAPADVAAVAKAGLAWSPEDVDPGQARALASALAALRDRDGRLEADDKQGDGVGKGKAKAEESGLRGEAMELGWMVLRATGNVVRAVETAVDANRRMAWSQEEEALFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAWKADRPLQYLEHAIPDYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPEDFSCSQCQAQYLTTSERERAKRWVESKVRKVQTLREKEMQRLSGAPAGYIGRRRTKGTREGGREGGRRGGQKREESSLKSGTHSRKPGSPSLRDLRGLYLTQRARVNGAGSASVRTVLPRLSRQPPARALALASSPPPRQPHCLPLPSPSFHPPHASCPPPRNLLVPFVNPWAPAPPGLEKADAFD 655
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|567947769|gb|ETK73542.1| (hypothetical protein, variant [Phytophthora parasitica]) HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-12 Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0 Query: 342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477 + A +V +AVE +A + EEA F M+ + K F +K P + +++V+ FY WK+ +Y W K R + + P D H + C +C + G LLCCD C A+H+ C+ DVPE D+ CS C+ Sbjct: 13 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKITFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 164
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|568005940|gb|ETL80217.1| (hypothetical protein, variant [Phytophthora parasitica]) HSP 1 Score: 80.4925 bits (197), Expect = 1.232e-12 Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0 Query: 342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477 + A +V +AVE +A + EEA F M+ + K F +K P + +++V+ FY WK+ +Y W K R + + P D H + C +C + G LLCCD C A+H+ C+ DVPE D+ CS C+ Sbjct: 13 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKITFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 164
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|570937781|gb|ETP03038.1| (hypothetical protein, variant [Phytophthora parasitica CJ01A1]) HSP 1 Score: 80.4925 bits (197), Expect = 1.266e-12 Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0 Query: 342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477 + A +V +AVE +A + EEA F M+ + K F +K P + +++V+ FY WK+ +Y W K R + + P D H + C +C + G LLCCD C A+H+ C+ DVPE D+ CS C+ Sbjct: 13 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKITFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 164
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|675210605|ref|XP_008914187.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|568085612|gb|ETN00516.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570314001|gb|ETO61949.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570968096|gb|ETP31215.1| hypothetical protein, variant [Phytophthora parasitica P10297]) HSP 1 Score: 80.4925 bits (197), Expect = 1.289e-12 Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0 Query: 342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477 + A +V +AVE +A + EEA F M+ + K F +K P + +++V+ FY WK+ +Y W K R + + P D H + C +C + G LLCCD C A+H+ C+ DVPE D+ CS C+ Sbjct: 13 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKLTFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 164
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|566010334|gb|ETI33245.1| (hypothetical protein, variant [Phytophthora parasitica P1569]) HSP 1 Score: 80.4925 bits (197), Expect = 1.399e-12 Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0 Query: 342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477 + A +V +AVE +A + EEA F M+ + K F +K P + +++V+ FY WK+ +Y W K R + + P D H + C +C + G LLCCD C A+H+ C+ DVPE D+ CS C+ Sbjct: 13 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKITFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 164
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|568035845|gb|ETM33472.1| (hypothetical protein, variant [Phytophthora parasitica]) HSP 1 Score: 80.4925 bits (197), Expect = 1.478e-12 Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0 Query: 342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477 + A +V +AVE +A + EEA F M+ + K F +K P + +++V+ FY WK+ +Y W K R + + P D H + C +C + G LLCCD C A+H+ C+ DVPE D+ CS C+ Sbjct: 13 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKLTFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 164
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|567976451|gb|ETL26974.1| (hypothetical protein, variant [Phytophthora parasitica]) HSP 1 Score: 80.1073 bits (196), Expect = 1.519e-12 Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0 Query: 342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477 + A +V +AVE +A + EEA F M+ + K F +K P + +++V+ FY WK+ +Y W K R + + P D H + C +C + G LLCCD C A+H+ C+ DVPE D+ CS C+ Sbjct: 13 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKLTFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 164
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|567947768|gb|ETK73541.1| (hypothetical protein L915_19563 [Phytophthora parasitica]) HSP 1 Score: 80.4925 bits (197), Expect = 1.950e-12 Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0 Query: 342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477 + A +V +AVE +A + EEA F M+ + K F +K P + +++V+ FY WK+ +Y W K R + + P D H + C +C + G LLCCD C A+H+ C+ DVPE D+ CS C+ Sbjct: 73 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKITFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 224
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|675210603|ref|XP_008914186.1| (hypothetical protein PPTG_17966 [Phytophthora parasitica INRA-310] >gi|568085611|gb|ETN00515.1| hypothetical protein PPTG_17966 [Phytophthora parasitica INRA-310] >gi|570314000|gb|ETO61948.1| hypothetical protein F444_20113 [Phytophthora parasitica P1976] >gi|570968095|gb|ETP31214.1| hypothetical protein F442_19925 [Phytophthora parasitica P10297]) HSP 1 Score: 80.4925 bits (197), Expect = 2.003e-12 Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0 Query: 342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477 + A +V +AVE +A + EEA F M+ + K F +K P + +++V+ FY WK+ +Y W K R + + P D H + C +C + G LLCCD C A+H+ C+ DVPE D+ CS C+ Sbjct: 73 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKLTFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 224 The following BLAST results are available for this feature:
BLAST of EWM22064.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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