EWM22064.1, cds8604 (CDS) Nannochloropsis gaditana

Overview
NameEWM22064.1
Unique Namecds8604
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:467251..468414 +
Alignment locationKK037249.1:468551..468697 +
Alignment locationKK037249.1:468878..468981 +
Alignment locationKK037249.1:469158..469710 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22064.1
Productnucleosome-remodeling factor subunit, putative
Orig transcript idgnl|cribi|Naga_100244g3.1329.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:467251..468414 +
KK037249.1supercontigKK037249.1:468551..468697 +
KK037249.1supercontigKK037249.1:468878..468981 +
KK037249.1supercontigKK037249.1:469158..469710 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0140110transcription regulator activity
GO:0003677DNA binding
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR017884SANT_dom
IPR019786Zinc_finger_PHD-type_CS
IPR009057Homeodomain-like
IPR019787Znf_PHD-finger
IPR013083Znf_RING/FYVE/PHD
IPR001965Znf_PHD
IPR001005SANT/Myb
Homology
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|585102480|gb|EWM22064.1| (nucleosome-remodeling factor subunit, putative [Nannochloropsis gaditana])

HSP 1 Score: 1327 bits (3433), Expect = 0.000e+0
Identity = 655/655 (100.00%), Postives = 655/655 (100.00%), Query Frame = 0
Query:    1 MAADGAEAATIILRSLPGRERTSLIPSPTRKRKGTHSSTRVPYTGTASFPSSSSPSSPSSSPSTAVAASFSSSSSQGSDQSVISSSRSASGSCTSCSSGSGGEEEEEHQGDASFPPHHETRAGPTVPRATQPNACIPSGTSRSRKSTSVPMEAPTMEAQGLARVEVKEEHRNGSTDGEARDNGGVRVRSVRRSQTRGMLEGTGEVLVKDGNNGRGEGGGDGGGRVPEGGEEGDGLPSIPAPAKAPREGAMYQVEEGKIPPVRPWARLAPADVAAVAKAGLAWSPEDVDPGQARALASALAALRDRDGRLEADDKQGDGVGKGKAKAEESGLRGEAMELGWMVLRATGNVVRAVETAVDANRRMAWSQEEEALFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAWKADRPLQYLEHAIPDYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPEDFSCSQCQAQYLTTSERERAKRWVESKVRKVQTLREKEMQRLSGAPAGYIGRRRTKGTREGGREGGRRGGQKREESSLKSGTHSRKPGSPSLRDLRGLYLTQRARVNGAGSASVRTVLPRLSRQPPARALALASSPPPRQPHCLPLPSPSFHPPHASCPPPRNLLVPFVNPWAPAPPGLEKADAFD 655
            MAADGAEAATIILRSLPGRERTSLIPSPTRKRKGTHSSTRVPYTGTASFPSSSSPSSPSSSPSTAVAASFSSSSSQGSDQSVISSSRSASGSCTSCSSGSGGEEEEEHQGDASFPPHHETRAGPTVPRATQPNACIPSGTSRSRKSTSVPMEAPTMEAQGLARVEVKEEHRNGSTDGEARDNGGVRVRSVRRSQTRGMLEGTGEVLVKDGNNGRGEGGGDGGGRVPEGGEEGDGLPSIPAPAKAPREGAMYQVEEGKIPPVRPWARLAPADVAAVAKAGLAWSPEDVDPGQARALASALAALRDRDGRLEADDKQGDGVGKGKAKAEESGLRGEAMELGWMVLRATGNVVRAVETAVDANRRMAWSQEEEALFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAWKADRPLQYLEHAIPDYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPEDFSCSQCQAQYLTTSERERAKRWVESKVRKVQTLREKEMQRLSGAPAGYIGRRRTKGTREGGREGGRRGGQKREESSLKSGTHSRKPGSPSLRDLRGLYLTQRARVNGAGSASVRTVLPRLSRQPPARALALASSPPPRQPHCLPLPSPSFHPPHASCPPPRNLLVPFVNPWAPAPPGLEKADAFD
Sbjct:    1 MAADGAEAATIILRSLPGRERTSLIPSPTRKRKGTHSSTRVPYTGTASFPSSSSPSSPSSSPSTAVAASFSSSSSQGSDQSVISSSRSASGSCTSCSSGSGGEEEEEHQGDASFPPHHETRAGPTVPRATQPNACIPSGTSRSRKSTSVPMEAPTMEAQGLARVEVKEEHRNGSTDGEARDNGGVRVRSVRRSQTRGMLEGTGEVLVKDGNNGRGEGGGDGGGRVPEGGEEGDGLPSIPAPAKAPREGAMYQVEEGKIPPVRPWARLAPADVAAVAKAGLAWSPEDVDPGQARALASALAALRDRDGRLEADDKQGDGVGKGKAKAEESGLRGEAMELGWMVLRATGNVVRAVETAVDANRRMAWSQEEEALFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAWKADRPLQYLEHAIPDYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPEDFSCSQCQAQYLTTSERERAKRWVESKVRKVQTLREKEMQRLSGAPAGYIGRRRTKGTREGGREGGRRGGQKREESSLKSGTHSRKPGSPSLRDLRGLYLTQRARVNGAGSASVRTVLPRLSRQPPARALALASSPPPRQPHCLPLPSPSFHPPHASCPPPRNLLVPFVNPWAPAPPGLEKADAFD 655          
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|567947769|gb|ETK73542.1| (hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-12
Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0
Query:  342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477
            +  A  +V +AVE   +A       + EEA       F   M+ + K F  +K   P  + +++V+ FY WK+  +Y  W       K  R  + +    P  D H + C +C + G LLCCD C  A+H+ C+     DVPE D+ CS C+
Sbjct:   13 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKITFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 164          
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|568005940|gb|ETL80217.1| (hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 80.4925 bits (197), Expect = 1.232e-12
Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0
Query:  342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477
            +  A  +V +AVE   +A       + EEA       F   M+ + K F  +K   P  + +++V+ FY WK+  +Y  W       K  R  + +    P  D H + C +C + G LLCCD C  A+H+ C+     DVPE D+ CS C+
Sbjct:   13 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKITFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 164          
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|570937781|gb|ETP03038.1| (hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 80.4925 bits (197), Expect = 1.266e-12
Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0
Query:  342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477
            +  A  +V +AVE   +A       + EEA       F   M+ + K F  +K   P  + +++V+ FY WK+  +Y  W       K  R  + +    P  D H + C +C + G LLCCD C  A+H+ C+     DVPE D+ CS C+
Sbjct:   13 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKITFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 164          
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|675210605|ref|XP_008914187.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|568085612|gb|ETN00516.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570314001|gb|ETO61949.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570968096|gb|ETP31215.1| hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 80.4925 bits (197), Expect = 1.289e-12
Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0
Query:  342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477
            +  A  +V +AVE   +A       + EEA       F   M+ + K F  +K   P  + +++V+ FY WK+  +Y  W       K  R  + +    P  D H + C +C + G LLCCD C  A+H+ C+     DVPE D+ CS C+
Sbjct:   13 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKLTFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 164          
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|566010334|gb|ETI33245.1| (hypothetical protein, variant [Phytophthora parasitica P1569])

HSP 1 Score: 80.4925 bits (197), Expect = 1.399e-12
Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0
Query:  342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477
            +  A  +V +AVE   +A       + EEA       F   M+ + K F  +K   P  + +++V+ FY WK+  +Y  W       K  R  + +    P  D H + C +C + G LLCCD C  A+H+ C+     DVPE D+ CS C+
Sbjct:   13 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKITFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 164          
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|568035845|gb|ETM33472.1| (hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 80.4925 bits (197), Expect = 1.478e-12
Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0
Query:  342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477
            +  A  +V +AVE   +A       + EEA       F   M+ + K F  +K   P  + +++V+ FY WK+  +Y  W       K  R  + +    P  D H + C +C + G LLCCD C  A+H+ C+     DVPE D+ CS C+
Sbjct:   13 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKLTFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 164          
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|567976451|gb|ETL26974.1| (hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 80.1073 bits (196), Expect = 1.519e-12
Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0
Query:  342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477
            +  A  +V +AVE   +A       + EEA       F   M+ + K F  +K   P  + +++V+ FY WK+  +Y  W       K  R  + +    P  D H + C +C + G LLCCD C  A+H+ C+     DVPE D+ CS C+
Sbjct:   13 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKLTFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 164          
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|567947768|gb|ETK73541.1| (hypothetical protein L915_19563 [Phytophthora parasitica])

HSP 1 Score: 80.4925 bits (197), Expect = 1.950e-12
Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0
Query:  342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477
            +  A  +V +AVE   +A       + EEA       F   M+ + K F  +K   P  + +++V+ FY WK+  +Y  W       K  R  + +    P  D H + C +C + G LLCCD C  A+H+ C+     DVPE D+ CS C+
Sbjct:   73 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKITFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 224          
BLAST of EWM22064.1 vs. NCBI_GenBank
Match: gi|675210603|ref|XP_008914186.1| (hypothetical protein PPTG_17966 [Phytophthora parasitica INRA-310] >gi|568085611|gb|ETN00515.1| hypothetical protein PPTG_17966 [Phytophthora parasitica INRA-310] >gi|570314000|gb|ETO61948.1| hypothetical protein F444_20113 [Phytophthora parasitica P1976] >gi|570968095|gb|ETP31214.1| hypothetical protein F442_19925 [Phytophthora parasitica P10297])

HSP 1 Score: 80.4925 bits (197), Expect = 2.003e-12
Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0
Query:  342 VLRATGNVVRAVETAVDANRRMAWSQEEEA------LFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWKQRADYRAW-------KADRPLQYLEHAIP--DYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPE-DFSCSQCQ 477
            +  A  +V +AVE   +A       + EEA       F   M+ + K F  +K   P  + +++V+ FY WK+  +Y  W       K  R  + +    P  D H + C +C + G LLCCD C  A+H+ C+     DVPE D+ CS C+
Sbjct:   73 LFEANYDVPKAVEIIHNARHAKLKLKREEAERIQKLTFERAMDRHGKKFHLVKRRFPTVATRELVSKFYLWKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHCR 224          
The following BLAST results are available for this feature:
BLAST of EWM22064.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102480|gb|EWM22064.1|0.000e+0100.00nucleosome-remodeling factor subunit, putative [Na... [more]
gi|567947769|gb|ETK73542.1|1.155e-1230.92hypothetical protein, variant [Phytophthora parasi... [more]
gi|568005940|gb|ETL80217.1|1.232e-1230.92hypothetical protein, variant [Phytophthora parasi... [more]
gi|570937781|gb|ETP03038.1|1.266e-1230.92hypothetical protein, variant [Phytophthora parasi... [more]
gi|675210605|ref|XP_008914187.1|1.289e-1230.92hypothetical protein, variant [Phytophthora parasi... [more]
gi|566010334|gb|ETI33245.1|1.399e-1230.92hypothetical protein, variant [Phytophthora parasi... [more]
gi|568035845|gb|ETM33472.1|1.478e-1230.92hypothetical protein, variant [Phytophthora parasi... [more]
gi|567976451|gb|ETL26974.1|1.519e-1230.92hypothetical protein, variant [Phytophthora parasi... [more]
gi|567947768|gb|ETK73541.1|1.950e-1230.92hypothetical protein L915_19563 [Phytophthora para... [more]
gi|675210603|ref|XP_008914186.1|2.003e-1230.92hypothetical protein PPTG_17966 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8631rna8631Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications