rna8599, rna8599 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8599
Unique Name	rna8599
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1056
Alignment location	KK037249.1:372691..374110 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100039g38.4442.mrna
Orig protein id	gnl\|cribi\|Naga_100039g38.4442
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:372691..374110 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100039g38	gene8334	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22104.1	cds8572	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8599	rna8599-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:372691..374110-
coding sequence from alignment at KK037249.1:372691..374110-

mRNA sequence

>rna8599 ID=rna8599|Name=rna8599|organism=Nannochloropsis gaditana|type=mRNA|length=1056bp
TTGTTCCTGAGGCATAATACTCTTTGGAATGAATTGCTCATCTCGGTGTC
GTCTATCCCATGCACAGGCTCTACCCTATGAAAGAGGAGACGGAGCTGGC
CCGCGCGCGACTTTTCTTCTTCGCTTGAAGGTGAAGGTCCTTCTGGACAT
TCTTCTTTTTGAGATCAAGGACGCCAAGCATCCTTTCATCCACTACGATT
GCACGTATGCCTGTCTTCCACTACCCTGCTGACTCTCAGACGAATGGCAC
GGCCATTTCCTACATTCCTGTGAGCAGCCAGAGCCATCCCCAAGAGTCGG
GAGGCCCTTCCTCTTCACCTACACGCCAGCCAAGAGGTCATGCCACGGAT
CCAGATTGCAACGATCTCGATCATGAGGCGCTCCCGACCAAAATGGATGA
AGATGAGGACGAGGACGAGGAGGAGGAAGAGGAGGAGGGCTGGGAGGATG
AGGAGTCTAAACGGCAAAAACGCTTGGAGCAAAATCGCAAGGCAGCACAT
GAAAGCCGACAGCGGAAAAAAATCAAATACCAACAACTTTCTGAGGCTCT
GGAAGCTCTTCGGGCAGAAAGCCTCCAGCTGTCGCAGCAATCTCAAAGCA
TGCGGGAGCAACTCGCCGCGACTCGACCCACCAGGCACAGCCAGGAAAGA
GCGCGTCTCGAGGAGGAGAACCAGCGCTTGCGTCAGGCGCTTTTGCTGGC
CTTGCAAGGACTGGCCGAGGACGAGGAAGAGGAGCCGATAGAGGAAGAGA
GGGAGGGTGGGCAGGGGGAGGGTCACAGCGCTCTAAGAGAAGAGGAGGAG
AGCAAAGAGGGGAACACCTCTGTGACGCGGGCGCCCATGCTGGAATAAGG
CTTTGGATGCTTGTGTCGTCTTCACTGTGCATAGCCGTGGATGTGTTTTT
CCGGGGGCCGGGCTCGGCCGAACCAGCATCCTAGGAGCGATTCTTTTGGC
CTCAAACGCAAATTAAATGTCTTTACTCATGCAATGAAACAAATAGCATC
AATTTGTCCACGAACATGCGTACCACTTTGCTTTCTGTTGATACTTTCGC
AGGAGC

protein sequence of rna8599

>rna8599-protein ID=rna8599-protein|Name=rna8599|organism=Nannochloropsis gaditana|type=polypeptide|length=234bp
MASGSISTSGQSESDVVIFLLVTLVIAVFVAGYLQKSTTTDIPRQRGREI
TTKKSTNVPTRTISVRAKALQKELALKLGSPVTLATEGILFRANNSSTTS
TDTPASTYDFVPQALDALTLLLEFADVFLLAEAQEGRSGEATQRRVLASL
ERERLVRKDATRDQEHGGQDGGTVAVHVGSFDVGRGDGCDGRPRMTQSSA
CAASSISLCWQQLPRCAQVLPHLSCIIACTLFGR

mRNA from alignment at KK037249.1:372691..374110-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8599 ID=rna8599|Name=rna8599|organism=Nannochloropsis gaditana|type=mRNA|length=1420bp|location=Sequence derived from alignment at KK037249.1:372691..374110- (Nannochloropsis gaditana)
TCAGCACTTTTCCCTTCGCCGCATGGCTTCTCATAAATGGCCAGAGGCCA
GTGTTCTTCTTGCTCTATGCATGAGGAGTCTGACAACGCTATTTTGAGAT
GAATTGCTACTCAGCGATGACGATAGCATTTGGTTGCAGGAACTTTGGTC
GTCACACGCTAGGGTTTAATCCGGCGCAGAGCCTTTAACACCTACGTCGA
TACATATACAGACAGGAGGCAAGGGACAAAAAGCTCTTCAGATATGGCAA
GTGGGAGCATCAGCACCAGTGGGCAGTCCGAAAGCGATGTGGTCATCTTC
CTCTTGGTGACTCTTGTAATAGCCGTTTTTGTGGCCGGCTATTTACAAAA
ATCAACCACGACAGACATCCCCAGACAGCGTGGAAGAGAGATCACCACGA
AAAAGAGCACAAATGTACCTACTCGAACCATTTCAGTCCGGGCGAAGGCC
CTTCAAAAGGAGTTGGCCCTGAAGTTGGGCAGTCCCGTCACATTGGCCAC
AGAAGGCATTTTGTTCAGAGCAAATAACAGCTCAACGACGTCAACAGATA
CACCAGCCTCAACATATGATTTTGTACCTCAAGCTCTGGATGCGTTGACG
CTGTTGTTGGAGTTTGCCGATGTCTTCCTCTTGGCCGAGGCCCAAGAAGG
GCGGTCAGGCGAGGCGACCCAACGTAGGGTCCTGGCCTCGCTGGAAAGGG
AGAGATTGGTACGCAAGGACGCGACAAGGGACCAAGAGCATGGAGGACAG
GATGGCGGCACCGTGGCAGTACATGTAGGGAGCTTTGATGTCGGGAGGGG
AGACGGGTGTGACGGACGGCCGCGCATGACGCAGAGTAGCGCGTGCGCTG
CCTCCTCCATCTCACTTTGCTGGCAGCAATTGCCTCGATGTGCACAGGTC
TTACCACATCTTTCCTGCATCATTGCTTGCACTCTTTTTGGGCGCTGAAT
GTACATGAGCAAACCCCGGCTCCATCTTCCTTGAGCCTCCCTATCTCTTA
CCCCGTCCTCTTTCCCTCCCGCTTTCCCCTACCTTCCAGAAAATTCTATT
TCACTCCACTTCGATCGGGAAGCAAGCCATCGTCCGCCACCTCAAACCCT
GCCTCCACATTGATCATGACCTAGGCGTGTTGATCCACCTTCGTGCCTTC
CTCCCTCGGCTTCTCCACGTCGCGTCCACCCCCGAGACATCTCCCACTCC
GCTTCCCGAGACGTCCGGGCATGTTCGAAGCCTCTCCTGCCTGGGCTCGT
TGCTGGCGCTCCTGCCGCCCCCGCCCGCGCCTCCACTAAGACCTCCTGCC
TCGTTGTCACCCCTCGAGAGAGAGAAGGCCGGGCAAGAACAGCCACGAGG
GTAGAAAGTGACGAGGGCAGCTCCTGCGAAAGTATCAACAGAAAGCAAAG
TGGTACGCATGTTCGTGGAC

Coding sequence (CDS) from alignment at KK037249.1:372691..374110-

>rna8599 ID=rna8599|Name=rna8599|organism=Nannochloropsis gaditana|type=CDS|length=705bp|location=Sequence derived from alignment at KK037249.1:372691..374110- (Nannochloropsis gaditana)
ATGGCAAGTGGGAGCATCAGCACCAGTGGGCAGTCCGAAAGCGATGTGGT
CATCTTCCTCTTGGTGACTCTTGTAATAGCCGTTTTTGTGGCCGGCTATT
TACAAAAATCAACCACGACAGACATCCCCAGACAGCGTGGAAGAGAGATC
ACCACGAAAAAGAGCACAAATGTACCTACTCGAACCATTTCAGTCCGGGC
GAAGGCCCTTCAAAAGGAGTTGGCCCTGAAGTTGGGCAGTCCCGTCACAT
TGGCCACAGAAGGCATTTTGTTCAGAGCAAATAACAGCTCAACGACGTCA
ACAGATACACCAGCCTCAACATATGATTTTGTACCTCAAGCTCTGGATGC
GTTGACGCTGTTGTTGGAGTTTGCCGATGTCTTCCTCTTGGCCGAGGCCC
AAGAAGGGCGGTCAGGCGAGGCGACCCAACGTAGGGTCCTGGCCTCGCTG
GAAAGGGAGAGATTGGTACGCAAGGACGCGACAAGGGACCAAGAGCATGG
AGGACAGGATGGCGGCACCGTGGCAGTACATGTAGGGAGCTTTGATGTCG
GGAGGGGAGACGGGTGTGACGGACGGCCGCGCATGACGCAGAGTAGCGCG
TGCGCTGCCTCCTCCATCTCACTTTGCTGGCAGCAATTGCCTCGATGTGC
ACAGGTCTTACCACATCTTTCCTGCATCATTGCTTGCACTCTTTTTGGGC
GCTGA

Synonyms

Publications