EWM22084.1, cds8569 (CDS) Nannochloropsis gaditana

Overview
NameEWM22084.1
Unique Namecds8569
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:363121..363340 +
Alignment locationKK037249.1:363626..364239 +

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Properties
Property NameValue
Protein idEWM22084.1
ProductrRNA processing
Orig transcript idgnl|cribi|Naga_100039g41.4422.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:363121..363340 +
KK037249.1supercontigKK037249.1:363626..364239 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR013730Fyv7/TAP26
Homology
[Close]
BLAST of EWM22084.1 vs. NCBI_GenBank
Match: gi|585102501|gb|EWM22084.1| (rRNA processing [Nannochloropsis gaditana])

HSP 1 Score: 535.413 bits (1378), Expect = 0.000e+0
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0 
Query:    1 MHDSRGQGRKRGPPWSTDRLPGDHGSAKAGGGRGGGQGRGEGGRVRGSGRTGGISVEHFAAGKRWTKSQKVTRKEKEFIHKKALLKSYRKLLKKEGFGPSLSTAQESGPGGMSLVPEGPLGEVSGGKRRLPPEIEKIGTEDEGLERCDTGPGRGELRKRTRMEAEESDGDSGGPPAAYRGDGGSSPQPGPARLRKGLKGTKAKPDPFARARQHALAKKEEAEEEALRREAKARALKKSAKVRRERHVLLSKTTRRGQPIMKTRIHGILDRLEREGRT 277
            MHDSRGQGRKRGPPWSTDRLPGDHGSAKAGGGRGGGQGRGEGGRVRGSGRTGGISVEHFAAGKRWTKSQKVTRKEKEFIHKKALLKSYRKLLKKEGFGPSLSTAQESGPGGMSLVPEGPLGEVSGGKRRLPPEIEKIGTEDEGLERCDTGPGRGELRKRTRMEAEESDGDSGGPPAAYRGDGGSSPQPGPARLRKGLKGTKAKPDPFARARQHALAKKEEAEEEALRREAKARALKKSAKVRRERHVLLSKTTRRGQPIMKTRIHGILDRLEREGRT
Sbjct:    1 MHDSRGQGRKRGPPWSTDRLPGDHGSAKAGGGRGGGQGRGEGGRVRGSGRTGGISVEHFAAGKRWTKSQKVTRKEKEFIHKKALLKSYRKLLKKEGFGPSLSTAQESGPGGMSLVPEGPLGEVSGGKRRLPPEIEKIGTEDEGLERCDTGPGRGELRKRTRMEAEESDGDSGGPPAAYRGDGGSSPQPGPARLRKGLKGTKAKPDPFARARQHALAKKEEAEEEALRREAKARALKKSAKVRRERHVLLSKTTRRGQPIMKTRIHGILDRLEREGRT 277
The following BLAST results are available for this feature:
BLAST of EWM22084.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585102501|gb|EWM22084.1|0.000e+0100.00rRNA processing [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8596rna8596Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications