rna8596, rna8596 (mRNA) Nannochloropsis gaditana

Overview
Namerna8596
Unique Namerna8596
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length423
Alignment locationKK037249.1:363083..364381 +

Link to JBrowse

Properties
Property NameValue
ProductrRNA processing
Orig transcript idgnl|cribi|Naga_100039g41.4422.mrna
Orig protein idgnl|cribi|Naga_100039g41.4422
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:363083..364381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100039g41gene8331Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8596rna8596-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22084.1cds8569Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8596 ID=rna8596|Name=rna8596|organism=Nannochloropsis gaditana|type=mRNA|length=423bp
ATGGGTGTTGAAGCGGGCATAGACGAAAAAGCGCCGCCCGCGGCAGCACA
AAAGGAACTGCCCCCGCTTGGGGCGGGCGCGGGCTTGACGGACAAAGCTG
AAGCACAGTCAGGTATGAGCAAAGGGACAGAAAATGTCGGCCCTGGCGAA
GAAAAGGGGACATCACAAGCACAAAAGGAGCAGGCTAACGTCGAAGAGGA
GTCTCTGGCAGAAATTGTCTTGGAAGTGGAATTGCCCACAGGAGGGGTGT
TGACGCTGCCGCCAGTGCAAGCTAGCGAGGTGGGGCTTGGAGTCAAGCAA
GTGCTGGCGGAGTATCCTGAGGCCTGCTACTACACCAGCTATGCATTGGT
CGTGAAAGGCAGTGACCCGCGCGTGGAGATCAACGACTTCACGGAACTGA
ATGAATATGAAGGTAACAGGTAA
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protein sequence of rna8596

>rna8596-protein ID=rna8596-protein|Name=rna8596|organism=Nannochloropsis gaditana|type=polypeptide|length=277bp
MHDSRGQGRKRGPPWSTDRLPGDHGSAKAGGGRGGGQGRGEGGRVRGSGR
TGGISVEHFAAGKRWTKSQKVTRKEKEFIHKKALLKSYRKLLKKEGFGPS
LSTAQESGPGGMSLVPEGPLGEVSGGKRRLPPEIEKIGTEDEGLERCDTG
PGRGELRKRTRMEAEESDGDSGGPPAAYRGDGGSSPQPGPARLRKGLKGT
KAKPDPFARARQHALAKKEEAEEEALRREAKARALKKSAKVRRERHVLLS
KTTRRGQPIMKTRIHGILDRLEREGRT
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mRNA from alignment at KK037249.1:363083..364381+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8596 ID=rna8596|Name=rna8596|organism=Nannochloropsis gaditana|type=mRNA|length=1299bp|location=Sequence derived from alignment at KK037249.1:363083..364381+ (Nannochloropsis gaditana)
ACATTCCTCAAGGCCATTTGTGAGTCGCGAACTCCAAAATGCACGATTCT
CGCGGACAGGGACGTAAAAGAGGGCCACCTTGGAGTACAGATCGACTACC
AGGGGACCACGGCAGCGCCAAggccggtggagggaggggcggaggtcagg
gacggggggaaggaggacgggtccGGGGCAGTGGCAGGACTGGTGGGATC
AGCGTGGAGCACTTCGCAGCGGGCAAGCGCTGGACTAAGAGTCAGAAGGT
GACTCGAAGTAAGTCGTGGttcgggagaggaagcaaggggTAGGAAAGCA
TAGGAATAGAATAGGAAAGAGAACACGTGCTTTGGGCCCCAGTACCTGGG
TGGCGAGTGGCACGAGGGGAGCACATGGACCGCTCGCAATTTTGGGACTA
GTCCCTTCATGGTCCTTGCACCTATTCAAAGAGTGCTCGGTACCCATAGC
TATCAGTATGCCGTGGCCACCTGCCTGATAGTGCACAtttccccgctccc
ctcACCTCAACCCCTACCCCCCGCCCGAACCTCTCGCtggcagaggagaa
ggagttcATCCACAAAAAAGCACTGCTAAAATCTTACCGGAAGCTtctga
agaaggagggcttcggaccttccctttccacagCCCAGGAGAGCGGCCCC
GGCGGCATGAGCCTCGTTCCTGAGGGACCCCTTGGCGAGGTCTCTGGTGG
GAAGCGGAGACTTCCTCCGGAAATCGAGAAGATCGGGACCGAAGATGAGG
GGTTGGAGCGTTGCGATACAGGTCCTGGCCGTGGGGAATTGCGGAAGCGG
AcaaggatggaggcggaggagtcTGACGGCGACAGCGGTGGGCCTCCCGC
GGCATAccggggagacggaggtTCTTCCCCACAGCCAGGGCCGGCGCGGC
TGCGGAAGGGATTGAAAGGGACGAAGGCTAAGCCAGACCCTTTCGCACGC
GCTCGCCAACACGCCTtggcgaagaaagaggaggcggaggaagaagcgct
TCGTCGGGAAGCGAAGGCCCGTGCGCTGAAAAAGAGCGCCAAGGTGCGCC
GAGAACGACACGTCCTTCTGAGCAAAACTACCCGGAGGGGGCAGCCGATC
ATGAAGACACGCATACACGGGATCTTGGACAGGctcgaaagggaagggag
gacgtgaaggggtccagggaggggcaagggagggaaggagggaaggagac
agagggcaAGGCACAGGAGCCAATCTAGATGGAAGACAGCCTTGTAAAAA
AATGCGCGCAAGCACCGGACAGAACAATGTTGCAACTAGAGGCGACGCC
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Coding sequence (CDS) from alignment at KK037249.1:363083..364381+

>rna8596 ID=rna8596|Name=rna8596|organism=Nannochloropsis gaditana|type=CDS|length=1668bp|location=Sequence derived from alignment at KK037249.1:363083..364381+ (Nannochloropsis gaditana)
ATGCACGATTCTCGCGGACAGGGACGTAAAAGAGGGCCACCTTGGAGTAC
AGATCGACTACCAGGGGACCACGGCAGCGCCAAggccggtggagggaggg
gcggaggtcagggacggggggaaggaggacgggtccGGGGCAGTGGCAGG
ACTGGTGGGATCAGCGTGGAGCACTTCGCAGCGGGCAAGCGCTGGACTAA
GAGTCAGAAGGTGACTCGAAaggagaaggagttcATCCACAAAAAAGCAC
TGCTAAAATCTTACCGGAAGCTtctgaagaaggagggcttcggaccttcc
ctttccacagCCCAGGAGAGCGGCCCCGGCGGCATGAGCCTCGTTCCTGA
GGGACCCCTTGGCGAGGTCTCTGGTGGGAAGCGGAGACTTCCTCCGGAAA
TCGAGAAGATCGGGACCGAAGATGAGGGGTTGGAGCGTTGCGATACAGGT
CCTGGCCGTGGGGAATTGCGGAAGCGGAcaaggatggaggcggaggagtc
TGACGGCGACAGCGGTGGGCCTCCCGCGGCATAccggggagacggaggtT
CTTCCCCACAGCCAGGGCCGGCGCGGCTGCGGAAGGGATTGAAAGGGACG
AAGGCTAAGCCAGACCCTTTCGCACGCGCTCGCCAACACGCCTtggcgaa
gaaagaggaggcggaggaagaagcgctTCGTCGGGAAGCGAAGGCCCGTG
CGCTGAAAAAGAGCGCCAAGGTGCGCCGAGAACGACACGTCCTTCTGAGC
AAAACTACCCGGAGGGGGCAGCCGATCATGAAGACACGCATACACGGGAT
CTTGGACAGGctcgaaagggaagggaggacgtgaATGCACGATTCTCGCG
GACAGGGACGTAAAAGAGGGCCACCTTGGAGTACAGATCGACTACCAGGG
GACCACGGCAGCGCCAAggccggtggagggaggggcggaggtcagggacg
gggggaaggaggacgggtccGGGGCAGTGGCAGGACTGGTGGGATCAGCG
TGGAGCACTTCGCAGCGGGCAAGCGCTGGACTAAGAGTCAGAAGGTGACT
CGAAaggagaaggagttcATCCACAAAAAAGCACTGCTAAAATCTTACCG
GAAGCTtctgaagaaggagggcttcggaccttccctttccacagCCCAGG
AGAGCGGCCCCGGCGGCATGAGCCTCGTTCCTGAGGGACCCCTTGGCGAG
GTCTCTGGTGGGAAGCGGAGACTTCCTCCGGAAATCGAGAAGATCGGGAC
CGAAGATGAGGGGTTGGAGCGTTGCGATACAGGTCCTGGCCGTGGGGAAT
TGCGGAAGCGGAcaaggatggaggcggaggagtcTGACGGCGACAGCGGT
GGGCCTCCCGCGGCATAccggggagacggaggtTCTTCCCCACAGCCAGG
GCCGGCGCGGCTGCGGAAGGGATTGAAAGGGACGAAGGCTAAGCCAGACC
CTTTCGCACGCGCTCGCCAACACGCCTtggcgaagaaagaggaggcggag
gaagaagcgctTCGTCGGGAAGCGAAGGCCCGTGCGCTGAAAAAGAGCGC
CAAGGTGCGCCGAGAACGACACGTCCTTCTGAGCAAAACTACCCGGAGGG
GGCAGCCGATCATGAAGACACGCATACACGGGATCTTGGACAGGctcgaa
agggaagggaggacgtga
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Synonyms
Publications