rna8521, rna8521 (mRNA) Nannochloropsis gaditana

Overview
Namerna8521
Unique Namerna8521
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1952
Alignment locationKK037249.1:155996..156487 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100153g4.4149.mrna
Orig protein idgnl|cribi|Naga_100153g4.4149
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:155996..156487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100153g4gene8259Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8521rna8521-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22175.1cds8494Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8521 ID=rna8521|Name=rna8521|organism=Nannochloropsis gaditana|type=mRNA|length=1952bp
GTATCAGGCGGGGCCGAAAAATGTGGGCAAGTGCAACAACGATCTCGATC
TTTTTTGCGAGTGCATGTGTTACCCTTGCTGCAAATAACTTGGCTTCATG
CAATCCAACCCGTTTGTGTGTCTCATTCCTTTGCAACTCTCTTTCTCCTT
GTGTTTTCTTTTCTCTCCTGCCATGCACATGTTTGTGACCTTTTCAGATG
TAATGTACGCCGGCGTACAATTTACCCGCGTGCTGTGCCAGGTGTAGCTG
AGATGGCGTTACCCTCAATGGGAGTTGTAACACTTTTCTATCAATGCACG
CGACCTCACTGCTCTTTGAACCACCATGGCATCATTTTTTCCTTTGCTAG
TTATTCTTGTCTTGGGGGCACGTACTGATGCCTTCTTTGTCCATCACCCC
TATCGACAGAAAGCTTTCTGGCCACGCGCCCTGCATATATCTTTTTCCTC
AGAACACCATGAAGATCTTCACGACCTCTGCAGCATGCCTGGCCCTCATG
ATGGCCCCCTTGTCCCTGATCAAGGCTGCCACAAGCATGGAAGACCTTGA
GAAGATGGAGTCCTGGAGCTACATCCACAATGTGAACTACGCACCCTGTG
ACGACGCGGACGCCAAGTCTTTCGGGTGCTGCGGGAAGCCCGAAGACGGG
AAGGAGCGATGCGGTCCCGACAACTGGATCCATATCAATGAGACCACGAC
CACCACCTGCGCCAACGTGAAGGGAAACCAACAGAGCCCCATCAACATCC
AAACCGTGGGCACCACCCTCACGCCCATGGACAAGGCGGACGGGACCATG
TCCTTCTCCGGGCACACGTGCGAAGCCTTCATTGAGTTCAAGGAGGGGAC
GTGGGAGGTGGTTATCCCTGACACGTGCACCTTCCAAGCCAAGATCGGGG
GCACCGACTACAAACTCCTCCAGTTCCACTTCCACAACGCGGAGCACTCC
ATCAACTTCTCCTACATGCCGCTGGAGGTCCATCTCGTCCACGCCAAGGT
AGACAGTCCCAAGGACATCGCCGTCCTCTCCGTCTTCCTCGCGCCCGGGG
CCTCCTCCACGTTCTTTGAGACCCTGCAGGCGAACGAGGCGCAGGCAGAC
CCCGACCACCCCGACCTGGCCACCAAGAACAAGATCAACGCCTACGACAT
CCTCCCCGAGGACCACTCCTTCTGGCACTACGTGGGCTCCCTCACCACCC
CTCCCTGCCAGACCGAGAAGGGACAGTCTGTGAACTGGTACCTGTTCAAG
ACGCCCAACACCCTGTCCTACAGCCAGCTCTACTACTTCACCTCCTACTT
CCGCGACCTGCCCCTGTCGGACAACGGCCGCATCTCCCGCGACACCCAGG
ACCTGGTGGAGGGAACCACCCTCTTCACTTTCCCCTAGACGCCTGGCGTG
GGAGGAGGCGGACAAAGAGGGGGGGCGACGAGAGCAGAAATTGCGTTTGT
CTTTTTTTAATCTCTTTTCTGGGGATGCCTCCAGAAAAACAAAGCCAAAG
AGCAGAAAGCAAGATGTGTGATGTTGGCCGGTGACACATGTGGGGCGTGG
CGTGGCAGTTCTGGTCTCGGTCTCGGGCCGAGCCGAGGAGCTGGAGCCTT
TCCAGGCCACGCGGATATGTACGTGGTAGGGGACGATAGCGTAAGTGTAT
GCCAGAGATAGATATGTAATTAAATGTACACGGTTGGGGACGTCGAGGCG
TGCATAGAGTGGAGGGAGAAAGGACAGGGGCCCTCTCGCCTTCGGTCCTC
TCATTTTATGATTTATACGAGCCCGTGACTGACGCAGAGACTCAATGCGC
CAGTGCGAGGCGACAGGACGAGGGAGAGCGCAGAAAAAAAGGATTCCTGA
GATAGGGCCTCTGATTTAGCAATTGTTAATCGACTTTAGTCCCATCAACA
AAGGTTTAAAATAGCCGAGACGCGAACCGAGTAATATTTGACAGAGTACT
GG
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protein sequence of rna8521

>rna8521-protein ID=rna8521-protein|Name=rna8521|organism=Nannochloropsis gaditana|type=polypeptide|length=93bp
MKPSYLQQGVVITAFLHFCHLLDNFIHVHGIQCANKQWLDAVTLLDTLPR
RLPETAWDDFLLDRVGRFWKDGRTICSLRLSNEEGRPHEEDTR
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mRNA from alignment at KK037249.1:155996..156487+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8521 ID=rna8521|Name=rna8521|organism=Nannochloropsis gaditana|type=mRNA|length=492bp|location=Sequence derived from alignment at KK037249.1:155996..156487+ (Nannochloropsis gaditana)
ATGAAGCCAAGTTATTTGCAGCAAGGGTAACACATGCACTCGCAAAAAAG
ATCGAGATCGTTGTTGCACTTGCCCACATTTTTCGGCCCCGCCTGATACG
ACGTAACAAAACTGTTCCATTTTCATCTGTTTTTTGAGCCGCAGTGTAGT
AATCACTGCATTTTTGCATTTTTGTCACCTACTTGACAATTTTATACACG
TTCACGGCATTCAATGCGCCAATAAGCAATGGCTTGACGCTGTTACACTC
CTAGATACTCTGCCCAGACGTCTCCCCGAAACTGCATGGGTAGTCAAGGG
ATAGCGCCTTTTCGATTTCTTGAGGGCTGCACACGTGAGCCATATCTTTC
GTTGGGCATTGATATCGGGCTAAATCACTAGGATGATTTTCTTTTAGATA
GGGTAGGACGGTTTTGGAAGGACGGGCGGACTATTTGCTCGTTAAGACTC
AGCAACGAAGAGGGGCGACCTCACGAGGAAGATACTCGCTAG
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Coding sequence (CDS) from alignment at KK037249.1:155996..156487+

>rna8521 ID=rna8521|Name=rna8521|organism=Nannochloropsis gaditana|type=CDS|length=846bp|location=Sequence derived from alignment at KK037249.1:155996..156487+ (Nannochloropsis gaditana)
ATGAAGCCAAGTTATTTGCAGCAAGGTGTAGTAATCACTGCATTTTTGCA
TTTTTGTCACCTACTTGACAATTTTATACACGTTCACGGCATTCAATGCG
CCAATAAGCAATGGCTTGACGCTGTTACACTCCTAGATACTCTGCCCAGA
CGTCTCCCCGAAACTGCATGGGATGATTTTCTTTTAGATAGGGTAGGACG
GTTTTGGAAGGACGGGCGGACTATTTGCTCGTTAAGACTCAGCAACGAAG
AGGGGCGACCTCACGAGGAAGATACTCGCTAGATGAAGCCAAGTTATTTG
CAGCAAGGTGTAGTAATCACTGCATTTTTGCATTTTTGTCACCTACTTGA
CAATTTTATACACGTTCACGGCATTCAATGCGCCAATAAGCAATGGCTTG
ACGCTGTTACACTCCTAGATACTCTGCCCAGACGTCTCCCCGAAACTGCA
TGGGATGATTTTCTTTTAGATAGGGTAGGACGGTTTTGGAAGGACGGGCG
GACTATTTGCTCGTTAAGACTCAGCAACGAAGAGGGGCGACCTCACGAGG
AAGATACTCGCTAGATGAAGCCAAGTTATTTGCAGCAAGGTGTAGTAATC
ACTGCATTTTTGCATTTTTGTCACCTACTTGACAATTTTATACACGTTCA
CGGCATTCAATGCGCCAATAAGCAATGGCTTGACGCTGTTACACTCCTAG
ATACTCTGCCCAGACGTCTCCCCGAAACTGCATGGGATGATTTTCTTTTA
GATAGGGTAGGACGGTTTTGGAAGGACGGGCGGACTATTTGCTCGTTAAG
ACTCAGCAACGAAGAGGGGCGACCTCACGAGGAAGATACTCGCTAG
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Synonyms
Publications