EWM22188.1, cds8486 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|585102623|gb|EWM22188.1| (splicing factor 3 subunit [Nannochloropsis gaditana]) HSP 1 Score: 434.876 bits (1117), Expect = 2.770e-154 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0 Query: 1 MSFPEAFFVVPLPVYVIDIVSTYSGYPRSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQAPTVNAIQDRS 211 MSFPEAFFVVPLPVYVIDIVSTYSGYPRSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQAPTVNAIQDRS Sbjct: 1 MSFPEAFFVVPLPVYVIDIVSTYSGYPRSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQAPTVNAIQDRS 211
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|301115148|ref|XP_002905303.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110092|gb|EEY68144.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 157.147 bits (396), Expect = 6.284e-45 Identity = 88/185 (47.57%), Postives = 114/185 (61.62%), Query Frame = 0 Query: 28 RSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGF----RAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKK-GVQAPTVNAI 207 R DNP F V M + ADP CCL S +CP + R +AL +M Y CCQGY G R+G GES+CP+ CLCLEA CC CAVSATR +MD+YR+ PD D +IIRC+N +Q +CICSL SIC+ +L + A I+ +A T+ T QGCM Q VE+ +EK VQ T++ + Sbjct: 15 RKDNPGAFHVGMMQAPGADPMCCLGSCLCPCCAQIIIRRKALNYDMTNYTCCQGYMD--GIVPCARSGRCGESSCPNGCLCLEAFCCNGCAVSATRMMVMDRYRLQPDKWDNRIIRCNNCIQLASCICSLLSICISELGDLADIMNCIAQCTYATTQGCMTAQVNVELREREKAFEVQDETMDRV 197
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|675193831|ref|XP_008905800.1| (hypothetical protein PPTG_11239 [Phytophthora parasitica INRA-310] >gi|566023820|gb|ETI46731.1| hypothetical protein F443_08916 [Phytophthora parasitica P1569] >gi|567961108|gb|ETK86653.1| hypothetical protein L915_08749 [Phytophthora parasitica] >gi|568019056|gb|ETL93210.1| hypothetical protein L917_08580 [Phytophthora parasitica] >gi|568049503|gb|ETM46483.1| hypothetical protein L914_08628 [Phytophthora parasitica] >gi|568094457|gb|ETN09239.1| hypothetical protein PPTG_11239 [Phytophthora parasitica INRA-310] >gi|570327480|gb|ETO75428.1| hypothetical protein F444_08983 [Phytophthora parasitica P1976] >gi|570951267|gb|ETP16524.1| hypothetical protein F441_08892 [Phytophthora parasitica CJ01A1] >gi|570985243|gb|ETP44582.1| hypothetical protein F442_08857 [Phytophthora parasitica P10297] >gi|970634890|gb|KUF79950.1| hypothetical protein AM587_10007986 [Phytophthora nicotianae]) HSP 1 Score: 156.377 bits (394), Expect = 1.218e-44 Identity = 85/173 (49.13%), Postives = 108/173 (62.43%), Query Frame = 0 Query: 28 RSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGF----RAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEK 196 R DNP F V M + ADP CCL S +CP + R +AL +M Y CCQGY G R+G GES+CP+ CLCLEA CC CAVSATR +MD+YR+ PD D +IIRC+N +Q +CICSL SIC+ +L + A I+ +A T+ T QGCM Q VE+ +EK Sbjct: 15 RKDNPGAFHVGMMQAPGADPLCCLGSCLCPCCAQIIIRRKALNYDMSNYTCCQGYMD--GIVPCARSGRCGESSCPNCCLCLEAFCCNGCAVSATRMMVMDRYRLQPDKWDNRIIRCNNCIQLASCICSLLSICISELGDLADIMNCIAQCTYATTQGCMTAQVNVELREREK 185
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|298711682|emb|CBJ32733.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 153.68 bits (387), Expect = 1.547e-43 Identity = 82/185 (44.32%), Postives = 114/185 (61.62%), Query Frame = 0 Query: 27 PRSDNPYTFKVP-MSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQAPTVNAIQDR 210 P NP F++ M C P C L C + R RAL+GN++ Y CCQGYYP+C AG+ GE +CP CLCLE+ CC +CAVS++R YLMDK+ + PDP D +IIR +N +Q L+CIC++A+IC++++RE ARI+ +A + + T GCM Q E+ +Q AP AI R Sbjct: 20 PFYGNPNQFQIGLMEAPCKNCPWFCFGCL-CTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVMPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADLVYMTTVGCMTGQMIYEMDYQASV---APKAQAIAGR 200
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|695392794|ref|XP_009520435.1| (hypothetical protein PHYSODRAFT_350080 [Phytophthora sojae] >gi|348685332|gb|EGZ25147.1| hypothetical protein PHYSODRAFT_350080 [Phytophthora sojae]) HSP 1 Score: 151.754 bits (382), Expect = 8.851e-43 Identity = 89/188 (47.34%), Postives = 112/188 (59.57%), Query Frame = 0 Query: 24 SGYP-----RSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGF----RAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQAP 202 SG P R NP F V M + ADP CCL S +CP V R +AL +M Y CCQGY G R+G GES+CP+ CLCLEA C CAVSATR +MD+YR+ PD D +IIRC+N +Q +CICSL SIC+ +L + A I+ +A T+ T QGCM Q VE+ +E KG + P Sbjct: 6 SGEPVEDDVRKGNPGAFHVGMMQAPSADPLCCLGSCLCPCCAQIVIRRKALNYDMSNYTCCQGYMD--GIVPCARSGRCGESSCPNCCLCLEAFFCNGCAVSATRMMVMDRYRLQPDKWDNRIIRCNNCIQLASCICSLLSICISELGDLADIMNCIAQCTYATTQGCMTAQVNVELRERE-KGFEVP 190
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|676380203|ref|XP_009033380.1| (hypothetical protein AURANDRAFT_69639 [Aureococcus anophagefferens] >gi|323456463|gb|EGB12330.1| hypothetical protein AURANDRAFT_69639 [Aureococcus anophagefferens]) HSP 1 Score: 144.821 bits (364), Expect = 3.246e-39 Identity = 83/183 (45.36%), Postives = 103/183 (56.28%), Query Frame = 0 Query: 21 STYSGYPRSDNPYTFKVPMSKTCIADP-CCCLASLVCPLPVA-CVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQA 201 S + R FK M DP CC L C LP C RH+ALEGNMD Y CCQGYY C F+AG +G+ P CL LE CC +C++S+TR Y+MDKY + DP D +IIR +N +Q LACIC LA++ R+ A IL +A I F T GCM Q E+ +EK G A Sbjct: 9 SPHENDARGGRQNMFKTGMQDAPCKDPLACCCGGLPCFLPFTNCYMRHKALEGNMDAYVCCQGYYDRCCFKAGSIGDQGNPC-CLALEGFCCLSCSLSSTRMYVMDKYDLQSDPCDRRIIRFNNCVQMLACICHLAAMFDPSFRDLANILDLIADIVFYTTAGCMHAQVHYELTEREKSGTLA 190
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|298711681|emb|CBJ32732.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 141.354 bits (355), Expect = 7.481e-39 Identity = 72/155 (46.45%), Postives = 102/155 (65.81%), Query Frame = 0 Query: 30 DNPYTFKVPMSKT-CIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCM 183 +NP F++ M + C P C L C + R RAL+GN+ Y CCQGY+P+C F G+ GE CP CLC+E+ C +CAVS++R YLMDK+ + PDP D +IIR +NA+Q L+CIC +A+ICV+++RE ARI+ +A + + T GCM Sbjct: 23 ENPNKFQIGMMEAPCKNCPWCTFGCL-CMCCAQFIVRKRALDGNLANYVCCQGYFPMCCFEPGDCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICHIAAICVREVRELARIIDLIADLVYMTTVGCM 176
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|551643637|ref|XP_005824612.1| (hypothetical protein GUITHDRAFT_165451 [Guillardia theta CCMP2712] >gi|428168690|gb|EKX37632.1| hypothetical protein GUITHDRAFT_165451 [Guillardia theta CCMP2712]) HSP 1 Score: 140.969 bits (354), Expect = 1.781e-38 Identity = 70/167 (41.92%), Postives = 102/167 (61.08%), Query Frame = 0 Query: 25 GYPRSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEI 191 G PR+ + M A+P CCLA L+CP P AC R +AL+ +M YKCCQGYY C F+AG GES+CP +C LEA CF+C++S+TR +MD I PDP D ++I +N +Q L+CIC++ ++ +++L A ++ +A + F V CM Q E+ Sbjct: 12 GDPRALYANEWNTGMCNAPCANPLCCLAGLLCPCPSACFIRRQALDTDMTRYKCCQGYYDFCCFQAGNFGESSCPDLCNGLEALLCFSCSISSTRMLVMDTRDIRPDPCDNRLIGLNNCLQLLSCICNILAMFIEELEALADLVDFIADVVFALVSSCMIAQVNYEL 178
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|551643639|ref|XP_005824613.1| (hypothetical protein GUITHDRAFT_116269 [Guillardia theta CCMP2712] >gi|428168691|gb|EKX37633.1| hypothetical protein GUITHDRAFT_116269 [Guillardia theta CCMP2712]) HSP 1 Score: 140.584 bits (353), Expect = 2.816e-38 Identity = 70/167 (41.92%), Postives = 102/167 (61.08%), Query Frame = 0 Query: 25 GYPRSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEI 191 G PR+ + M A+P CCLA L+CP P AC R +AL+ +M YKCCQGYY C F+AG GES+CP +C LEA CF+C++S+TR +MD I PDP D ++I +N +Q L+CIC++ ++ +++L A ++ +A + F V CM Q E+ Sbjct: 12 GDPRALYANEWNTGMCGAPCANPLCCLAGLLCPCPSACFIRRQALDTDMTRYKCCQGYYDFCCFQAGNFGESSCPDLCNGLEALLCFSCSISSTRMLVMDTRDIRPDPCDNRLIGLNNCLQLLSCICNILAMFIEELEALADLVDFIADVVFALVSSCMIAQVNYEL 178
BLAST of EWM22188.1 vs. NCBI_GenBank
Match: gi|635368969|emb|CCI42872.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 137.887 bits (346), Expect = 2.268e-37 Identity = 80/192 (41.67%), Postives = 110/192 (57.29%), Query Frame = 0 Query: 21 STYSGYPRSDNPYTFKVPMSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYP--LCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQAPTVNAIQDR 210 S G R N F V M + PCCCLAS CP + R +AL+ +M +Y C QGY + R+G+ GE +CP CLCLE+ C CAVSATR +MD+Y + PD D +IIRC+N +Q L+C+CS +IC+ +L A +L A T+ T QGCM Q VE+ + +K +A V+ + DR Sbjct: 8 SPVDGDVRGQNSNEFMVGMMSAPCSSPCCCLASCFCPCCAQYIIRRKALDNDMSKYVCFQGYLDGVIPCLRSGQCGERSCPHCCLCLESWLCNGCAVSATRMLVMDRYNLRPDKWDNRIIRCNNCIQLLSCVCSCLAICISELGNCADLLNCFAQCTYMTTQGCMTAQVNVEL--KRRKNYRA-AVDEVMDR 196 The following BLAST results are available for this feature:
BLAST of EWM22188.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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