EWM22191.1, cds8483 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|585102627|gb|EWM22191.1| (60s ribosomal protein l13 [Nannochloropsis gaditana]) HSP 1 Score: 422.165 bits (1084), Expect = 1.881e-149 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGDA 206 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGDA Sbjct: 1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGDA 206
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|553180942|ref|XP_005853485.1| (large subunit ribosomal protein L13e [Nannochloropsis gaditana CCMP526] >gi|422295574|gb|EKU22873.1| large subunit ribosomal protein L13e [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 417.157 bits (1071), Expect = 1.909e-147 Identity = 204/206 (99.03%), Postives = 204/206 (99.03%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGDA 206 MVRHNNVIPNQHFHKDWQTRVKTWF QPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKE GLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGDA Sbjct: 1 MVRHNNVIPNQHFHKDWQTRVKTWFVQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEAGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGDA 206
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|298715038|emb|CBJ27745.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 252.292 bits (643), Expect = 2.910e-82 Identity = 122/194 (62.89%), Postives = 144/194 (74.23%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIR 194 MV+HNNV+PN HFHK WQ RV+TWFDQPAKKKARR AR+ KAA +APRPTQLLRP VH PT +YN K RLGRGF ++ELKE G++KK A ++GIAVDHRRTN S ES ANV RLKEY++ LI+FP G PK GDSS E +AA Q TG +PL K VEF+ V+ E+ H+ RVARN+ KL GIR Sbjct: 1 MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSLHSERRVARNEFKLAGIR 194
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|527206291|gb|EPS71909.1| (hypothetical protein M569_02849 [Genlisea aurea]) HSP 1 Score: 224.557 bits (571), Expect = 2.451e-71 Identity = 116/206 (56.31%), Postives = 148/206 (71.84%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQ-LLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGD 205 MV+HNNV+PN HF K WQ VKTWF+QPA+K RR+AR+ KA + PRPT LRPVVH T++YN K R G+GF+++ELK G+ KK A ++GIAVDHRR N S+E LQANVQRLK YK+KL+VFP R +K KAGDS+ E +A Q +G VLP+ K VE V V+EELK+FRA+ LRV R +++ G R KA +A K + Sbjct: 1 MVKHNNVVPNSHFRKHWQDYVKTWFNQPARKTRRRIARQKKAVKIFPRPTAGPLRPVVHCQTRKYNMKVRAGKGFSLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPR-RARKFKAGDSTAEELASATQVSGPVLPIVGEKPNVELVKVTEELKSFRAYDKLRVERMNKRHAGKRAKKAAEAEKDE 205
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|1208503090|gb|OWM64850.1| (hypothetical protein CDL15_Pgr028567 [Punica granatum]) HSP 1 Score: 223.402 bits (568), Expect = 6.004e-71 Identity = 115/206 (55.83%), Postives = 147/206 (71.36%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQ-LLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGD 205 MV+HNNV+PN HF K WQ VKTWF+QPA+K RRLAR+ KA + PRPT+ LRPVVH T +YN K R GRGF+++ELK G+ KK A ++GIAVDHRR N S+ESLQ NVQRLK YK+KL+VFP R +K KAGDS+ E +A Q G+ +P+ K AVE V V++E+K+F A+ LRV R +++ G R KA +A K D Sbjct: 1 MVKHNNVVPNGHFRKHWQNYVKTWFNQPARKVRRRLARQKKAVKIFPRPTEGPLRPVVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRKNRSLESLQTNVQRLKTYKAKLVVFPR-RPRKFKAGDSTAEELASATQVQGSFMPIVREKPAVELVKVTDEMKSFNAYAKLRVERTNKRHYGARLKKAAEAEKED 205
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|1021560746|ref|XP_016171623.1| (60S ribosomal protein L13-1 [Arachis ipaensis]) HSP 1 Score: 223.016 bits (567), Expect = 8.705e-71 Identity = 114/206 (55.34%), Postives = 146/206 (70.87%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQ-LLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGD 205 MV+HNNVIPN HF K WQ VKTWF+QPA+K RRLAR+ KA + PRPT LRP+VH T +YN K R G+GF+++ELK G+ KK A ++GIAVDHRR N S+ES+QANVQRLK YK+KL+VFP R KK KAGDS+ E A Q G+ +P+ K +VE V V++E+K F+A+ LR+ R ++K G R KA +A K D Sbjct: 1 MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLARQEKAVKIFPRPTAGSLRPIVHGQTLKYNMKVRAGKGFSLEELKAAGIPKKLAPTIGIAVDHRRKNRSLESMQANVQRLKTYKAKLVVFPR-RAKKVKAGDSTAEELANATQVQGSYMPILREKPSVELVKVTDEMKAFKAYYKLRLERTNKKHYGARLKKAAEAEKED 205
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|1117383948|ref|XP_019462129.1| (PREDICTED: 60S ribosomal protein L13-1-like [Lupinus angustifolius] >gi|1102703225|gb|OIW02254.1| hypothetical protein TanjilG_15137 [Lupinus angustifolius]) HSP 1 Score: 222.631 bits (566), Expect = 1.208e-70 Identity = 115/206 (55.83%), Postives = 144/206 (69.90%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQ-LLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGD 205 MV+HNNVIPN HF K WQ VKTWF+QPA+K RRLAR+ KA + PRPT LRPVVH T +YN K + GRGF+++ELK G+ K+ A ++GIAVDHRR N S+ESLQAN QRLK YK+KL+VFP R +K KAGDS+ E A Q GT LP+P K VE V V+EELK F+A+ LR+ R +++ G R +A A K + Sbjct: 1 MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVKAGRGFSLEELKAAGIPKRLAPTIGIAVDHRRKNRSLESLQANAQRLKTYKAKLVVFPR-RARKVKAGDSTPEELANATQVQGTYLPIPVEKPTVELVKVTEELKAFKAYYKLRLERTNKRHHGARLKRAADAEKEE 205
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|813177711|ref|XP_012205325.1| (50S ribosomal protein L13e [Saprolegnia parasitica CBS 223.65] >gi|641529854|gb|KDO24006.1| 50S ribosomal protein L13e [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 222.246 bits (565), Expect = 2.041e-70 Identity = 121/206 (58.74%), Postives = 147/206 (71.36%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQ-LLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGD 205 MV+HNNVIPN HFHKDWQ R+KTWFDQ AKKK+RRL RKAKAAA+APRP LLRP VH PT +Y K R GRGFT+ ELKE G+++K A S+GIAVD+RRTN SVESLQANVQRLK YKSKL+VFP R KPK GD+S + +AAVQ TG + P+ V +++ +KN LR+A+ D +L G+R+ A D Sbjct: 1 MVKHNNVIPNGHFHKDWQNRIKTWFDQAAKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTVKYGSKVRAGRGFTLDELKEAGISRKQALSIGIAVDYRRTNKSVESLQANVQRLKAYKSKLVVFPRKRASKPKQGDASVEDIKAAVQHTGVLFPIARASTEVATAKITDAMKNESVVKTLRLAKADARLVGLRKKMAADKANAD 206
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|1150710719|ref|XP_020265977.1| (60S ribosomal protein L13-1-like [Asparagus officinalis] >gi|1141989422|gb|ONK70643.1| uncharacterized protein A4U43_C05F35870 [Asparagus officinalis]) HSP 1 Score: 222.246 bits (565), Expect = 2.179e-70 Identity = 113/206 (54.85%), Postives = 145/206 (70.39%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQ-LLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGD 205 MV+HNNVIPN HF K WQ VKTWFDQPA+K RR+AR+ KA + PRPT LRPVVH T +YN KTR GRGFT++ELK G+ KK+A +VGIAVDHRR N S+E LQ+NVQRLKEYK+KL++FP R K K+GDS+ E ++ Q G +P+ K V + V+EE+K FRA+ LR+ R +++ G R +A +A K D Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFDQPARKTRRRIARQKKAVKIFPRPTAGPLRPVVHCQTLKYNMKTRAGRGFTLEELKMAGIPKKWAPTVGIAVDHRRKNRSLEGLQSNVQRLKEYKAKLVIFPR-RPGKFKSGDSAAEELASSTQVQGDYMPITREKPVVSLIKVTEEMKAFRAYQKLRLERTNKRHHGARLKRAAEAEKED 205
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|1150746948|ref|XP_020247615.1| (60S ribosomal protein L13-1-like isoform X1 [Asparagus officinalis] >gi|1150746950|ref|XP_020247616.1| 60S ribosomal protein L13-1-like isoform X2 [Asparagus officinalis] >gi|1141975971|gb|ONK57197.1| uncharacterized protein A4U43_C10F17600 [Asparagus officinalis]) HSP 1 Score: 222.246 bits (565), Expect = 2.301e-70 Identity = 114/206 (55.34%), Postives = 145/206 (70.39%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQ-LLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGD 205 MV+HNNVIPN HF K WQ VKTWFDQPA+K RR+AR+ KA + PRPT LRPVVH T +YN KTR GRGF+++ELK G+ KK+A +VGIAVDHRR N S+E LQANVQRLKEYK+KL++FP R K K+GDS+ E ++ Q G +P+ K V V V+EE+K FRA+ LR+ R +++ G R +A +A K D Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFDQPARKTRRRIARQKKAVKIFPRPTAGPLRPVVHCQTLKYNMKTRAGRGFSLEELKMAGIPKKWAPTVGIAVDHRRKNRSLEGLQANVQRLKEYKAKLVIFPR-RPGKFKSGDSAAEELASSTQVQGDYMPITREKPVVSLVKVTEEMKAFRAYQKLRLERTNKRHHGARLKRAAEAEKED 205 The following BLAST results are available for this feature:
BLAST of EWM22191.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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