EWM22306.1, cds8367 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|585102795|gb|EWM22306.1| (coatomer protein subunit gamma, partial [Nannochloropsis gaditana]) HSP 1 Score: 412.535 bits (1059), Expect = 7.621e-146 Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0 Query: 1 PLGCLQELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKPGSSTHNLHLSGVFVGNRPVLVRAQLQADQAAGMVLKIAVRSEDLNLSQMVADCIR 201 PLGCLQELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKPGSSTHNLHLSGVFVGNRPVLVRAQLQADQAAGMVLKIAVRSEDLNLSQMVADCIR Sbjct: 1 PLGCLQELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKPGSSTHNLHLSGVFVGNRPVLVRAQLQADQAAGMVLKIAVRSEDLNLSQMVADCIR 201
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|1210528102|dbj|GAX13217.1| (hypothetical protein FisN_17Hh149 [Fistulifera solaris]) HSP 1 Score: 194.126 bits (492), Expect = 6.651e-54 Identity = 101/196 (51.53%), Postives = 135/196 (68.88%), Query Frame = 0 Query: 7 ELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKPGSSTHNLHLSGVFVGNRPVLVRAQLQAD-QAAGMVLKIAVRSEDLNLSQMVADCIR 201 E++S +G + + YG T S + VL R + +SP S C L F V +DP SGE G+ F EEYP+E LEI+TSD+MAKVA + DFKK W+A+G + EV+ F LQFK++++A+ AV+D+LGMQ CDGT A+ KPG H LHLSGVFV + VL RAQ+ + G+VLKIAVRS+D +SQ+V+DCIR Sbjct: 755 EIFSASGEIACSGIKYGETK-SCFTVLERNTEMPLSPSSFTCELRFTVCMVDPASGEELGD--SFEEEYPVEDLEISTSDFMAKVA-VPDFKKAWDAVGNDNEVLNKFALQFKKMEDAVAAVLDFLGMQTCDGTGAV-KPGGKPHMLHLSGVFVTGQQVLARAQIAMQGENGGVVLKIAVRSDDAEVSQLVSDCIR 945
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|1210518481|dbj|GAX22656.1| (hypothetical protein FisN_17Lh149 [Fistulifera solaris]) HSP 1 Score: 189.889 bits (481), Expect = 2.313e-52 Identity = 99/196 (50.51%), Postives = 133/196 (67.86%), Query Frame = 0 Query: 7 ELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKPGSSTHNLHLSGVFVGNRPVLVRAQLQAD-QAAGMVLKIAVRSEDLNLSQMVADCIR 201 E++S +G + + YG T S + VL R + +SP S C L F V +DP SGE G+ F EEYP+E LEI+TSD+MAKVA + DFKK W+ +G + EV+ F LQFK++++A+ AV+D+LGMQ CDGT + KPG H LHLSGVFV + VL RAQ+ + G+VLKIAVRS+D +SQ+V+DCIR Sbjct: 755 EIFSASGEIACAGIKYGETK-SCFTVLERNTEMPLSPSSFTCELRFTVCMVDPASGEELGD--SFEEEYPVEDLEISTSDFMAKVA-VPDFKKAWDTVGNDNEVLNKFALQFKKMEDAVAAVLDFLGMQPCDGTGVV-KPGGKPHMLHLSGVFVTGQQVLARAQIAMQGENGGVVLKIAVRSDDAEVSQLVSDCIR 945
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|397620717|gb|EJK65869.1| (hypothetical protein THAOC_13228 [Thalassiosira oceanica]) HSP 1 Score: 189.504 bits (480), Expect = 4.080e-52 Identity = 99/198 (50.00%), Postives = 137/198 (69.19%), Query Frame = 0 Query: 7 ELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAM--GKPGSSTHNLHLSGVFVGNRPVLVRAQLQAD-QAAGMVLKIAVRSEDLNLSQMVADCIR 201 E + VAG + ++ YG T +VV+ R+ ++P S +C L F V+ +DP +GE E +P + EEYPLE LE++TSD+MAKVA + DF+ +WE++G EV+E F LQFK ++A+ AVID LGMQ CDGT + G+ G H LHLSG+FVG VL RAQ+ A A+G++LKIAVRS+D ++S+MVADCIR Sbjct: 766 ECFEVAGEIAAESVKYGET-ADAFVVVTRDVGAALAPSSFECVLRFGVIQVDPRTGEDESDP--YEEEYPLEDLELSTSDFMAKVA-VPDFRSSWESVGNANEVLEKFALQFKRQEDAVAAVIDLLGMQPCDGTGHVKAGEGGRKPHMLHLSGIFVGGTTVLARAQVAASGDASGVLLKIAVRSDDPSVSRMVADCIR 959
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|298705020|emb|CBJ28495.1| (Coatomer protein complex, gamma sub-unit [Ectocarpus siliculosus]) HSP 1 Score: 184.496 bits (467), Expect = 9.736e-51 Identity = 102/197 (51.78%), Postives = 127/197 (64.47%), Query Frame = 0 Query: 7 ELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEE--YPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKPGSSTHNLHLSGVFVGNRPVLVRAQLQADQAAGMVLKIAVRSEDLNLSQMVADCIR 201 +LY V V LP L G T G YVVL+ P + C L F +D+DP +G +EG+ E YPLE L I T+D+MAKV+ LGDF++ WE +G E EV+E F L FK LQEA+ AV D+LGMQ CDGT ++ G H LHL G+FVGN PVLVRAQL D AG +LKIAVRS ++S+MVADCI+ Sbjct: 613 DLYEVEASVALPELKCGDT-GHAYVVLKLAEGNAAEPAAFSCELKFQALDVDPATGLLEGDEDEEGFEEEYPLEQLNIATADFMAKVS-LGDFRRGWEQMGAEAEVLEKFALGFKRLQEAVAAVEDFLGMQTCDGTGSVA-AGKKEHALHLCGIFVGNVPVLVRAQLNVDPQAGCILKIAVRSNQPDVSRMVADCIQ 806
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|219112963|ref|XP_002186065.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582915|gb|ACI65535.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 181.415 bits (459), Expect = 2.475e-49 Identity = 101/197 (51.27%), Postives = 136/197 (69.04%), Query Frame = 0 Query: 7 ELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKP--GSSTHNLHLSGVFVGNRPVLVRAQLQADQAAGMVLKIAVRSEDLNLSQMVADCIR 201 E+++V+G + + YG T + +L R A+ ++P C L F VV +D +GE EG+ EEYPLE LEI TSD+MAKVA + DF+K WEA+G E EV+E F LQFK++++A+ AV+D+LGMQACDGTA + KP G H LH+SGVFVG + VL RAQ+ +VLKIAVRSED ++S++VADCIR Sbjct: 719 EIFTVSGEIACDGIKYGDT-KHCFAILERNAEIQLTPSHFTCELRFTVVQVDSTTGEEEGDKF--EEEYPLEDLEIATSDFMAKVA-VPDFRKAWEAVGNENEVLEKFALQFKKMEDAVAAVLDFLGMQACDGTATV-KPNAGGKPHMLHMSGVFVGGQQVLSRAQIVMQGTNSVVLKIAVRSEDSDVSRIVADCIR 910
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|676385467|ref|XP_009036012.1| (hypothetical protein AURANDRAFT_37193 [Aureococcus anophagefferens] >gi|323453003|gb|EGB08875.1| hypothetical protein AURANDRAFT_37193 [Aureococcus anophagefferens]) HSP 1 Score: 175.252 bits (443), Expect = 4.486e-47 Identity = 96/201 (47.76%), Postives = 134/201 (66.67%), Query Frame = 0 Query: 7 ELYSVAGVVPLPALPYGATPGSTYVVLRREADTVI-SPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGT-----AAMGKPGSSTHNLHLSGVFVGNRPVLVRAQLQADQAAGMVLKIAVRSEDLNLSQMVADCIR 201 E YS+ V P+L GAT S ++VLR + + + L F VV++DP +GEIEG+ GF EEYPLE +EI+T+D+MAK A +G+F++ WE++ QEV++ F LQFK+++ AI AVI LGM+ D T A++GKP H LHLSG F GN +LVRAQL ++ G +LKIAVRS D+ +SQ++ADCI+ Sbjct: 760 ETYSIVSSVGAPSLHCGATARS-WIVLRCCPGSRMGAAAHFMAELKFRVVEVDPGTGEIEGDEEGFHEEYPLEDVEISTTDFMAK-ASIGEFRQVWESIDKTQEVLQKFSLQFKDMKVAIAAVIACLGMRPEDHTNDVDDASLGKP----HMLHLSGTFAGNICILVRAQLHIEERLGCILKIAVRSSDIEISQLIADCIK 954
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|224008733|ref|XP_002293325.1| (coatomer protein subunit gamma [Thalassiosira pseudonana CCMP1335] >gi|220970725|gb|EED89061.1| coatomer protein subunit gamma [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 170.629 bits (431), Expect = 1.653e-45 Identity = 101/198 (51.01%), Postives = 137/198 (69.19%), Query Frame = 0 Query: 7 ELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAM--GKPGSSTHNLHLSGVFVGNRPVLVRAQLQAD-QAAGMVLKIAVRSEDLNLSQMVADCIR 201 E + VAG + ++ YG T + + V+ R + ++P + +C L F V+ +DP SGE E +P F EEYPLE LE+ TSD+MAKV+ + DF+K WE +G EV+E F LQFK+ ++A+ AVID+LGMQ CDGT + G+ G H LHLSGVFVG VL RAQ+ A AAG++LKIAVRS+D ++S+MVADCIR Sbjct: 715 ECFEVAGEIAAESIKYGET-ANAFTVINRNTEAPLAPCNFECVLRFGVIQVDPKSGEDESDP--FDEEYPLEELELATSDFMAKVS-VPDFRKGWEEVGNANEVLEKFALQFKKQEDAVAAVIDFLGMQPCDGTGHIKPGEGGKKPHMLHLSGVFVGGMNVLARAQVAASGDAAGVLLKIAVRSDDPDVSRMVADCIR 908
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|676396487|ref|XP_009041521.1| (hypothetical protein AURANDRAFT_39222 [Aureococcus anophagefferens] >gi|323447884|gb|EGB03791.1| hypothetical protein AURANDRAFT_39222 [Aureococcus anophagefferens]) HSP 1 Score: 159.458 bits (402), Expect = 1.386e-41 Identity = 89/198 (44.95%), Postives = 124/198 (62.63%), Query Frame = 0 Query: 8 LYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYM--AKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKPGSST--HNLHLSGVFVGNRPVLVRAQLQADQAAGMVLKIAVRSEDLNLSQMVADCIR 201 +Y++ + L G T S V+ R +++ I L F V++IDP + EIEG+ GFAEEYPLE +EI+T+D+M A+VA DF+ WE+L + EV+E F LQFK+L+ A+ AV LGMQ D + + + H+LHLSG+F + VLVRAQL D+ AG VLK+AVRS L +SQ+VADCI+ Sbjct: 719 VYTIVQSISAAKLRCGVTTRSWLVLRRNTSESNIFAAQFVAELKFRVLEIDPNTAEIEGDEDGFAEEYPLEDVEISTNDFMGKARVAD-TDFRSAWESLDRDGEVLEKFSLQFKDLESAVTAVTACLGMQPEDNSQTITDRTKAGVPHSLHLSGIFWVDVRVLVRAQLLLDEKAGCVLKMAVRSPVLQISQIVADCIK 915
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|1072222978|gb|OEU07736.1| (Coatomer, gamma subunit [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 158.688 bits (400), Expect = 2.259e-41 Identity = 90/198 (45.45%), Postives = 123/198 (62.12%), Query Frame = 0 Query: 9 YSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKP--GSSTHNLHLSGVFVGNRPVLVRAQLQADQAAG---MVLKIAVRSEDLNLSQMVADCIR 201 ++ +G + ++ YG + V+ R D ++ + C L F VV++DP E E F EEYPLE LEI TSD+MAKV DF+K+WE LG EV+E F LQFK++ +A+ A++ +LGMQ CDGT + KP G+ H LH+SG FV + VL RAQ+ D G ++LKIAVRSED +S+MVADCI Sbjct: 734 FTASGEIACESIKYGESKNCFTVLERNNTDEPLTTNTFTCELRFTVVEVDP--ATGEEEGGTFEEEYPLEDLEITTSDFMAKVTT-PDFRKSWETLGNTNEVLEKFALQFKKMDDAVAAIVSFLGMQPCDGTGTI-KPDAGNKPHMLHMSGAFVTGQQVLARAQVAFDGTNGQGQVILKIAVRSEDEAVSRMVADCIH 927 The following BLAST results are available for this feature:
BLAST of EWM22306.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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