EWM22306.1, cds8367 (CDS) Nannochloropsis gaditana

Overview
NameEWM22306.1
Unique Namecds8367
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:567520..567631 -
Alignment locationKK037248.1:567309..567385 -
Alignment locationKK037248.1:567069..567149 -
Alignment locationKK037248.1:566754..566834 -
Alignment locationKK037248.1:566466..566578 -
Alignment locationKK037248.1:566251..566332 -
Alignment locationKK037248.1:566049..566108 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22306.1
Productcoatomer protein subunit gamma
Partialtrue
Orig transcript idgnl|cribi|Naga_100465g4.10752.mrna
GbkeyCDS
End range.
End range567631
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:567520..567631 -
KK037248.1supercontigKK037248.1:567309..567385 -
KK037248.1supercontigKK037248.1:567069..567149 -
KK037248.1supercontigKK037248.1:566754..566834 -
KK037248.1supercontigKK037248.1:566466..566578 -
KK037248.1supercontigKK037248.1:566251..566332 -
KK037248.1supercontigKK037248.1:566049..566108 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0005794Golgi apparatus
GO:0016020membrane
GO:0030126COPI vesicle coat
GO:0030117membrane coat
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR013041Coatomer/clathrin_app_Ig-like
IPR009028Coatomer/calthrin_app_sub_C
IPR017106Coatomer_gsu
IPR013040Coatomer_gsu_app_Ig-like-sub
IPR015873Clathrin_a/coatomer_app_sub_C
Homology
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|585102795|gb|EWM22306.1| (coatomer protein subunit gamma, partial [Nannochloropsis gaditana])

HSP 1 Score: 412.535 bits (1059), Expect = 7.621e-146
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0
Query:    1 PLGCLQELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKPGSSTHNLHLSGVFVGNRPVLVRAQLQADQAAGMVLKIAVRSEDLNLSQMVADCIR 201
            PLGCLQELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKPGSSTHNLHLSGVFVGNRPVLVRAQLQADQAAGMVLKIAVRSEDLNLSQMVADCIR
Sbjct:    1 PLGCLQELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKPGSSTHNLHLSGVFVGNRPVLVRAQLQADQAAGMVLKIAVRSEDLNLSQMVADCIR 201          
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|1210528102|dbj|GAX13217.1| (hypothetical protein FisN_17Hh149 [Fistulifera solaris])

HSP 1 Score: 194.126 bits (492), Expect = 6.651e-54
Identity = 101/196 (51.53%), Postives = 135/196 (68.88%), Query Frame = 0
Query:    7 ELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKPGSSTHNLHLSGVFVGNRPVLVRAQLQAD-QAAGMVLKIAVRSEDLNLSQMVADCIR 201
            E++S +G +    + YG T  S + VL R  +  +SP S  C L F V  +DP SGE  G+   F EEYP+E LEI+TSD+MAKVA + DFKK W+A+G + EV+  F LQFK++++A+ AV+D+LGMQ CDGT A+ KPG   H LHLSGVFV  + VL RAQ+    +  G+VLKIAVRS+D  +SQ+V+DCIR
Sbjct:  755 EIFSASGEIACSGIKYGETK-SCFTVLERNTEMPLSPSSFTCELRFTVCMVDPASGEELGD--SFEEEYPVEDLEISTSDFMAKVA-VPDFKKAWDAVGNDNEVLNKFALQFKKMEDAVAAVLDFLGMQTCDGTGAV-KPGGKPHMLHLSGVFVTGQQVLARAQIAMQGENGGVVLKIAVRSDDAEVSQLVSDCIR 945          
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|1210518481|dbj|GAX22656.1| (hypothetical protein FisN_17Lh149 [Fistulifera solaris])

HSP 1 Score: 189.889 bits (481), Expect = 2.313e-52
Identity = 99/196 (50.51%), Postives = 133/196 (67.86%), Query Frame = 0
Query:    7 ELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKPGSSTHNLHLSGVFVGNRPVLVRAQLQAD-QAAGMVLKIAVRSEDLNLSQMVADCIR 201
            E++S +G +    + YG T  S + VL R  +  +SP S  C L F V  +DP SGE  G+   F EEYP+E LEI+TSD+MAKVA + DFKK W+ +G + EV+  F LQFK++++A+ AV+D+LGMQ CDGT  + KPG   H LHLSGVFV  + VL RAQ+    +  G+VLKIAVRS+D  +SQ+V+DCIR
Sbjct:  755 EIFSASGEIACAGIKYGETK-SCFTVLERNTEMPLSPSSFTCELRFTVCMVDPASGEELGD--SFEEEYPVEDLEISTSDFMAKVA-VPDFKKAWDTVGNDNEVLNKFALQFKKMEDAVAAVLDFLGMQPCDGTGVV-KPGGKPHMLHLSGVFVTGQQVLARAQIAMQGENGGVVLKIAVRSDDAEVSQLVSDCIR 945          
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|397620717|gb|EJK65869.1| (hypothetical protein THAOC_13228 [Thalassiosira oceanica])

HSP 1 Score: 189.504 bits (480), Expect = 4.080e-52
Identity = 99/198 (50.00%), Postives = 137/198 (69.19%), Query Frame = 0
Query:    7 ELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAM--GKPGSSTHNLHLSGVFVGNRPVLVRAQLQAD-QAAGMVLKIAVRSEDLNLSQMVADCIR 201
            E + VAG +   ++ YG T    +VV+ R+    ++P S +C L F V+ +DP +GE E +P  + EEYPLE LE++TSD+MAKVA + DF+ +WE++G   EV+E F LQFK  ++A+ AVID LGMQ CDGT  +  G+ G   H LHLSG+FVG   VL RAQ+ A   A+G++LKIAVRS+D ++S+MVADCIR
Sbjct:  766 ECFEVAGEIAAESVKYGET-ADAFVVVTRDVGAALAPSSFECVLRFGVIQVDPRTGEDESDP--YEEEYPLEDLELSTSDFMAKVA-VPDFRSSWESVGNANEVLEKFALQFKRQEDAVAAVIDLLGMQPCDGTGHVKAGEGGRKPHMLHLSGIFVGGTTVLARAQVAASGDASGVLLKIAVRSDDPSVSRMVADCIR 959          
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|298705020|emb|CBJ28495.1| (Coatomer protein complex, gamma sub-unit [Ectocarpus siliculosus])

HSP 1 Score: 184.496 bits (467), Expect = 9.736e-51
Identity = 102/197 (51.78%), Postives = 127/197 (64.47%), Query Frame = 0
Query:    7 ELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEE--YPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKPGSSTHNLHLSGVFVGNRPVLVRAQLQADQAAGMVLKIAVRSEDLNLSQMVADCIR 201
            +LY V   V LP L  G T G  YVVL+        P +  C L F  +D+DP +G +EG+      E  YPLE L I T+D+MAKV+ LGDF++ WE +G E EV+E F L FK LQEA+ AV D+LGMQ CDGT ++   G   H LHL G+FVGN PVLVRAQL  D  AG +LKIAVRS   ++S+MVADCI+
Sbjct:  613 DLYEVEASVALPELKCGDT-GHAYVVLKLAEGNAAEPAAFSCELKFQALDVDPATGLLEGDEDEEGFEEEYPLEQLNIATADFMAKVS-LGDFRRGWEQMGAEAEVLEKFALGFKRLQEAVAAVEDFLGMQTCDGTGSVA-AGKKEHALHLCGIFVGNVPVLVRAQLNVDPQAGCILKIAVRSNQPDVSRMVADCIQ 806          
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|219112963|ref|XP_002186065.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582915|gb|ACI65535.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 181.415 bits (459), Expect = 2.475e-49
Identity = 101/197 (51.27%), Postives = 136/197 (69.04%), Query Frame = 0
Query:    7 ELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKP--GSSTHNLHLSGVFVGNRPVLVRAQLQADQAAGMVLKIAVRSEDLNLSQMVADCIR 201
            E+++V+G +    + YG T    + +L R A+  ++P    C L F VV +D  +GE EG+     EEYPLE LEI TSD+MAKVA + DF+K WEA+G E EV+E F LQFK++++A+ AV+D+LGMQACDGTA + KP  G   H LH+SGVFVG + VL RAQ+       +VLKIAVRSED ++S++VADCIR
Sbjct:  719 EIFTVSGEIACDGIKYGDT-KHCFAILERNAEIQLTPSHFTCELRFTVVQVDSTTGEEEGDKF--EEEYPLEDLEIATSDFMAKVA-VPDFRKAWEAVGNENEVLEKFALQFKKMEDAVAAVLDFLGMQACDGTATV-KPNAGGKPHMLHMSGVFVGGQQVLSRAQIVMQGTNSVVLKIAVRSEDSDVSRIVADCIR 910          
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|676385467|ref|XP_009036012.1| (hypothetical protein AURANDRAFT_37193 [Aureococcus anophagefferens] >gi|323453003|gb|EGB08875.1| hypothetical protein AURANDRAFT_37193 [Aureococcus anophagefferens])

HSP 1 Score: 175.252 bits (443), Expect = 4.486e-47
Identity = 96/201 (47.76%), Postives = 134/201 (66.67%), Query Frame = 0
Query:    7 ELYSVAGVVPLPALPYGATPGSTYVVLRREADTVI-SPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGT-----AAMGKPGSSTHNLHLSGVFVGNRPVLVRAQLQADQAAGMVLKIAVRSEDLNLSQMVADCIR 201
            E YS+   V  P+L  GAT  S ++VLR    + + +       L F VV++DP +GEIEG+  GF EEYPLE +EI+T+D+MAK A +G+F++ WE++   QEV++ F LQFK+++ AI AVI  LGM+  D T     A++GKP    H LHLSG F GN  +LVRAQL  ++  G +LKIAVRS D+ +SQ++ADCI+
Sbjct:  760 ETYSIVSSVGAPSLHCGATARS-WIVLRCCPGSRMGAAAHFMAELKFRVVEVDPGTGEIEGDEEGFHEEYPLEDVEISTTDFMAK-ASIGEFRQVWESIDKTQEVLQKFSLQFKDMKVAIAAVIACLGMRPEDHTNDVDDASLGKP----HMLHLSGTFAGNICILVRAQLHIEERLGCILKIAVRSSDIEISQLIADCIK 954          
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|224008733|ref|XP_002293325.1| (coatomer protein subunit gamma [Thalassiosira pseudonana CCMP1335] >gi|220970725|gb|EED89061.1| coatomer protein subunit gamma [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 170.629 bits (431), Expect = 1.653e-45
Identity = 101/198 (51.01%), Postives = 137/198 (69.19%), Query Frame = 0
Query:    7 ELYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAM--GKPGSSTHNLHLSGVFVGNRPVLVRAQLQAD-QAAGMVLKIAVRSEDLNLSQMVADCIR 201
            E + VAG +   ++ YG T  + + V+ R  +  ++P + +C L F V+ +DP SGE E +P  F EEYPLE LE+ TSD+MAKV+ + DF+K WE +G   EV+E F LQFK+ ++A+ AVID+LGMQ CDGT  +  G+ G   H LHLSGVFVG   VL RAQ+ A   AAG++LKIAVRS+D ++S+MVADCIR
Sbjct:  715 ECFEVAGEIAAESIKYGET-ANAFTVINRNTEAPLAPCNFECVLRFGVIQVDPKSGEDESDP--FDEEYPLEELELATSDFMAKVS-VPDFRKGWEEVGNANEVLEKFALQFKKQEDAVAAVIDFLGMQPCDGTGHIKPGEGGKKPHMLHLSGVFVGGMNVLARAQVAASGDAAGVLLKIAVRSDDPDVSRMVADCIR 908          
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|676396487|ref|XP_009041521.1| (hypothetical protein AURANDRAFT_39222 [Aureococcus anophagefferens] >gi|323447884|gb|EGB03791.1| hypothetical protein AURANDRAFT_39222 [Aureococcus anophagefferens])

HSP 1 Score: 159.458 bits (402), Expect = 1.386e-41
Identity = 89/198 (44.95%), Postives = 124/198 (62.63%), Query Frame = 0
Query:    8 LYSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYM--AKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKPGSST--HNLHLSGVFVGNRPVLVRAQLQADQAAGMVLKIAVRSEDLNLSQMVADCIR 201
            +Y++   +    L  G T  S  V+ R  +++ I        L F V++IDP + EIEG+  GFAEEYPLE +EI+T+D+M  A+VA   DF+  WE+L  + EV+E F LQFK+L+ A+ AV   LGMQ  D +  +     +   H+LHLSG+F  +  VLVRAQL  D+ AG VLK+AVRS  L +SQ+VADCI+
Sbjct:  719 VYTIVQSISAAKLRCGVTTRSWLVLRRNTSESNIFAAQFVAELKFRVLEIDPNTAEIEGDEDGFAEEYPLEDVEISTNDFMGKARVAD-TDFRSAWESLDRDGEVLEKFSLQFKDLESAVTAVTACLGMQPEDNSQTITDRTKAGVPHSLHLSGIFWVDVRVLVRAQLLLDEKAGCVLKMAVRSPVLQISQIVADCIK 915          
BLAST of EWM22306.1 vs. NCBI_GenBank
Match: gi|1072222978|gb|OEU07736.1| (Coatomer, gamma subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 158.688 bits (400), Expect = 2.259e-41
Identity = 90/198 (45.45%), Postives = 123/198 (62.12%), Query Frame = 0
Query:    9 YSVAGVVPLPALPYGATPGSTYVVLRREADTVISPESLQCRLLFNVVDIDPVSGEIEGEPSGFAEEYPLEALEINTSDYMAKVAPLGDFKKNWEALGPEQEVMEHFQLQFKELQEAIVAVIDYLGMQACDGTAAMGKP--GSSTHNLHLSGVFVGNRPVLVRAQLQADQAAG---MVLKIAVRSEDLNLSQMVADCIR 201
            ++ +G +   ++ YG +     V+ R   D  ++  +  C L F VV++DP     E E   F EEYPLE LEI TSD+MAKV    DF+K+WE LG   EV+E F LQFK++ +A+ A++ +LGMQ CDGT  + KP  G+  H LH+SG FV  + VL RAQ+  D   G   ++LKIAVRSED  +S+MVADCI 
Sbjct:  734 FTASGEIACESIKYGESKNCFTVLERNNTDEPLTTNTFTCELRFTVVEVDP--ATGEEEGGTFEEEYPLEDLEITTSDFMAKVTT-PDFRKSWETLGNTNEVLEKFALQFKKMDDAVAAIVSFLGMQPCDGTGTI-KPDAGNKPHMLHMSGAFVTGQQVLARAQVAFDGTNGQGQVILKIAVRSEDEAVSRMVADCIH 927          
The following BLAST results are available for this feature:
BLAST of EWM22306.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102795|gb|EWM22306.1|7.621e-146100.00coatomer protein subunit gamma, partial [Nannochlo... [more]
gi|1210528102|dbj|GAX13217.1|6.651e-5451.53hypothetical protein FisN_17Hh149 [Fistulifera sol... [more]
gi|1210518481|dbj|GAX22656.1|2.313e-5250.51hypothetical protein FisN_17Lh149 [Fistulifera sol... [more]
gi|397620717|gb|EJK65869.1|4.080e-5250.00hypothetical protein THAOC_13228 [Thalassiosira oc... [more]
gi|298705020|emb|CBJ28495.1|9.736e-5151.78Coatomer protein complex, gamma sub-unit [Ectocarp... [more]
gi|219112963|ref|XP_002186065.1|2.475e-4951.27predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|676385467|ref|XP_009036012.1|4.486e-4747.76hypothetical protein AURANDRAFT_37193 [Aureococcus... [more]
gi|224008733|ref|XP_002293325.1|1.653e-4551.01coatomer protein subunit gamma [Thalassiosira pseu... [more]
gi|676396487|ref|XP_009041521.1|1.386e-4144.95hypothetical protein AURANDRAFT_39222 [Aureococcus... [more]
gi|1072222978|gb|OEU07736.1|2.259e-4145.45Coatomer, gamma subunit [Fragilariopsis cylindrus ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8394rna8394Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications