EWM22327.1, cds8358 (CDS) Nannochloropsis gaditana

Overview
NameEWM22327.1
Unique Namecds8358
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:542912..543048 +
Alignment locationKK037248.1:543164..543329 +
Alignment locationKK037248.1:543431..543715 +
Alignment locationKK037248.1:543859..544074 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22327.1
ProductProtein of unknown function DUF3228
Orig transcript idgnl|cribi|Naga_100118g23.2754.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:542912..543048 +
KK037248.1supercontigKK037248.1:543164..543329 +
KK037248.1supercontigKK037248.1:543431..543715 +
KK037248.1supercontigKK037248.1:543859..544074 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR021610DUF3228
Homology
BLAST of EWM22327.1 vs. NCBI_GenBank
Match: gi|585102824|gb|EWM22327.1| (Protein of unknown function DUF3228 [Nannochloropsis gaditana])

HSP 1 Score: 553.903 bits (1426), Expect = 0.000e+0
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0
Query:    1 MKKLAWPLPIRIRSSRLWNQLPSASLRTLVLSGPRFTCIQRTSRLSSLFAVYDQHVCLRSQFIGFTLGISLICLPIATSIPSKISLQITAFKKNLLPSLTHVDNYLRTKTPPLREGYSSFCYHLIVPNFAHLKASYLKIVPENEHLIRTAYDANSPEDLPVLTRYFPASAVKEMTGPAKFLDVILYTREEIHQENIARGMEHLNNASDAPWGIMRVKAQDVERELPMLPTTLIRNALGKGFGGSGVPLDVDRYKESVGFWMHHAAIR 267
            MKKLAWPLPIRIRSSRLWNQLPSASLRTLVLSGPRFTCIQRTSRLSSLFAVYDQHVCLRSQFIGFTLGISLICLPIATSIPSKISLQITAFKKNLLPSLTHVDNYLRTKTPPLREGYSSFCYHLIVPNFAHLKASYLKIVPENEHLIRTAYDANSPEDLPVLTRYFPASAVKEMTGPAKFLDVILYTREEIHQENIARGMEHLNNASDAPWGIMRVKAQDVERELPMLPTTLIRNALGKGFGGSGVPLDVDRYKESVGFWMHHAAIR
Sbjct:    1 MKKLAWPLPIRIRSSRLWNQLPSASLRTLVLSGPRFTCIQRTSRLSSLFAVYDQHVCLRSQFIGFTLGISLICLPIATSIPSKISLQITAFKKNLLPSLTHVDNYLRTKTPPLREGYSSFCYHLIVPNFAHLKASYLKIVPENEHLIRTAYDANSPEDLPVLTRYFPASAVKEMTGPAKFLDVILYTREEIHQENIARGMEHLNNASDAPWGIMRVKAQDVERELPMLPTTLIRNALGKGFGGSGVPLDVDRYKESVGFWMHHAAIR 267          
BLAST of EWM22327.1 vs. NCBI_GenBank
Match: gi|298707970|emb|CBJ30341.1| (flagellar associated protein [Ectocarpus siliculosus])

HSP 1 Score: 176.022 bits (445), Expect = 8.537e-51
Identity = 83/166 (50.00%), Postives = 116/166 (69.88%), Query Frame = 0
Query:  102 VDNYLRTKTPPLREGYSSFCYHLIVPNFAHLKASYLKIVPENEHLIRTAYDANSPEDLPVLTRYFPASAVKEMTGPAKFLDVILYTREEIHQENIARGMEHLNNASDAPWGIMRVKAQDVERELPMLPTTLIRNALGKGFGGSGVPLDVDRYKESVGFWMHHAAIR 267
            V+   R     L EGY+ FC H+ VPNFA +K S +KI PENE L+   Y+A + ++LP+L+R+F +  V+  T  AKFLD+ILY+RE+I +E  A G E  +  S+APWGI+ VK+QDV+ E+PM P T++RNALGK  GGSGVPL+ ++Y +SV FW  HA ++
Sbjct:   90 VNEIFRAAGGKLEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLVAGYEARTAKELPILSRWFESGTVE--TPEAKFLDIILYSREQIRKETAAMGKEKED--SEAPWGIISVKSQDVDHEIPMQPITMMRNALGKEEGGSGVPLEREKYMQSVEFWRDHAPVK 251          
BLAST of EWM22327.1 vs. NCBI_GenBank
Match: gi|290996712|ref|XP_002680926.1| (predicted protein [Naegleria gruberi] >gi|284094548|gb|EFC48182.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 167.162 bits (422), Expect = 5.833e-48
Identity = 79/158 (50.00%), Postives = 107/158 (67.72%), Query Frame = 0
Query:  113 LREGYSSFCYHLIVPNFAHLKASYLKIVPENEHLIRTAYDANSPEDLPVLTRYFPASAVKEMTGPAKFLDVILYTREEIHQENIA----RGMEHLNNASDAPWGIMRVKAQDVERELPMLPTTLIRNALGKGFGGSGVPLDVDRYKESVGFWMHHAAI 266
            L++GY+ FC HL VPNFA  K S+L+I  +NEHL+RT Y      +LPVL RYFP   VK+    +K+LD+ILY++E+I +E+ A       E     +D  WGI+ VK+QDV+ ELPM P T++RNALGK  GGSGVPL+  +Y +SV FW ++A I
Sbjct:   47 LKDGYAPFCKHLFVPNFAGCKQSFLEITKDNEHLLRTEYQQRKESELPVLCRYFPYDLVKDQIKDSKYLDIILYSKEQILKESEAMQEVSDYEKRPEITDCEWGIISVKSQDVDYELPMTPITMMRNALGKEEGGSGVPLERTKYMDSVEFWKNYATI 204          
BLAST of EWM22327.1 vs. NCBI_GenBank
Match: gi|922869556|gb|KOO35654.1| (flagellar associated protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 165.236 bits (417), Expect = 3.081e-47
Identity = 80/156 (51.28%), Postives = 109/156 (69.87%), Query Frame = 0
Query:  112 PLREGYSSFCYHLIVPNFAHLKASYLKIVPENEHLIRTAYDANSPEDLPVLTRYFPASAVKEMTGPAKFLDVILYTREEIHQENIARGMEHLNNASDAPWGIMRVKAQDVERELPMLPTTLIRNALGKGFGGSGVPLDVDRYKESVGFWMHHAAIR 267
            PL +GY+ FC HL VPNFA +K + L + PENE  +R+ Y+A + ++L VLTR+FP     E T  A+++D+ILY+RE+I++E  A G E     + APWGI+ +KAQDV  ELPM P T++RNALGK  GGSGVP++  +Y ESV FW  HA I+
Sbjct:   44 PLVDGYAPFCKHLFVPNFAGVKNNVLVVTPENEGRLRSGYEARTEQELAVLTRWFPKDGADEPT-VARYMDIILYSREQINKEAAAMGREE--EPTTAPWGIISIKAQDVGYELPMQPITMMRNALGKEEGGSGVPMERAKYLESVAFWSKHAPIK 196          
BLAST of EWM22327.1 vs. NCBI_GenBank
Match: gi|585110008|gb|EWM27735.1| (Protein of unknown function DUF3228 [Nannochloropsis gaditana])

HSP 1 Score: 163.31 bits (412), Expect = 7.212e-46
Identity = 87/187 (46.52%), Postives = 116/187 (62.03%), Query Frame = 0
Query:   82 SKISLQITAFKKNLLPSLTHVDNYLRTKTPPLREGYSSFCYHLIVPNFAHLKASYLKIVPENEHLIRTAYDANSPEDLPVLTRYFPASAVKEMTGPAKFLDVILYTREEIHQENIARGMEHL-NNASDAPWGIMRVKAQDVERELPMLPTTLIRNALGKGFGGSGVPLDVDRYKESVGFWMHHAAIR 267
            SKI L  + F++ +        N      P L +GY+ FC H+ +PNFA L++    I  EN HL+R+ Y+A   ++LPVL RYFP   V     PA FLD+ILY+RE+I +EN    M +L    + +PWGI+ VK QDV+ ELPM P T++RNALG+G+GGSGV LD  +Y  SV FW  HA IR
Sbjct:   70 SKIRLPPSEFEEQV--------NAYYQANPTLVDGYAPFCKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEEVA--LKPAAFLDIILYSREQIQKEN--EDMANLVKEQNHSPWGIVSVKPQDVDYELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR 244          
BLAST of EWM22327.1 vs. NCBI_GenBank
Match: gi|118356530|ref|XP_001011521.1| (flagellar associated protein [Tetrahymena thermophila SB210] >gi|89293288|gb|EAR91276.1| flagellar associated protein [Tetrahymena thermophila SB210])

HSP 1 Score: 160.614 bits (405), Expect = 1.710e-45
Identity = 78/155 (50.32%), Postives = 104/155 (67.10%), Query Frame = 0
Query:  113 LREGYSSFCYHLIVPNFAHLKASYLKIVPENEHLIRTAYDANSPEDLPVLTRYFPASAVKEMTGPAKFLDVILYTREEIHQENIARGMEHLNNASDAPWGIMRVKAQDVERELPMLPTTLIRNALGKGFGGSGVPLDVDRYKESVGFWMHHAAIR 267
            L +GY+ FC HL +PNF   K S  KI PENEHL++T Y+A + ++LPVL RYFP  +V +    A  LD+ILY++E+I  EN A G    N   D  WG++ VK Q+++ E+PM P T++RNALGK  GGSGVPLD  +Y ESV FW  +A I+
Sbjct:   46 LVDGYAPFCKHLFIPNFTQTKLSTSKITPENEHLLKTIYEARTEKELPVLRRYFPVGSVPQEV--ASHLDIILYSKEQIQLENAAMGNVDPNKDIDYHWGVVSVKPQNLDYEIPMDPITMMRNALGKEEGGSGVPLDRKKYLESVEFWSKNAIIK 198          
BLAST of EWM22327.1 vs. NCBI_GenBank
Match: gi|1173937464|gb|OQR88253.1| (hypothetical protein THRCLA_10388 [Thraustotheca clavata])

HSP 1 Score: 160.614 bits (405), Expect = 1.800e-45
Identity = 78/166 (46.99%), Postives = 110/166 (66.27%), Query Frame = 0
Query:  102 VDNYLRTKTPPLREGYSSFCYHLIVPNFAHLKASYLKIVPENEHLIRTAYDANSPEDLPVLTRYFPASAVKEMTGPAKFLDVILYTREEIHQENIARGMEHLNNASDAPWGIMRVKAQDVERELPMLPTTLIRNALGKGFGGSGVPLDVDRYKESVGFWMHHAAIR 267
            +++   +    L +GY+ FC HL VPNF   K SY +I   N+HL+++ Y A  P +LPVL R+FP+++++     AKFLDVILY+RE+I +E+ A G        D+PWGI+ +KAQD E ELPM P T++RNALGK  GGSGVPL  + Y ++V +W  HA I+
Sbjct:   37 INDLFDSGACSLVDGYAPFCKHLFVPNFVQAKLSYARITDANKHLLQSDYVARVPTELPVLVRWFPSNSIEPEI--AKFLDVILYSREQICKEHEATGAPFDAKNGDSPWGIISIKAQDAEHELPMNPITVMRNALGKEEGGSGVPLLRENYMQAVKYWKDHAVIQ 200          
BLAST of EWM22327.1 vs. NCBI_GenBank
Match: gi|219113855|ref|XP_002186511.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583361|gb|ACI65981.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 160.999 bits (406), Expect = 1.856e-45
Identity = 78/161 (48.45%), Postives = 112/161 (69.57%), Query Frame = 0
Query:  107 RTKTPPLREGYSSFCYHL-IVPNFAHLKASYLKIVPENEHLIRTAYDANSPEDLPVLTRYFPASAVKEMTGPAKFLDVILYTREEIHQENIARGMEHLNNASDAPWGIMRVKAQDVERELPMLPTTLIRNALGKGFGGSGVPLDVDRYKESVGFWMHHAAI 266
            R ++  L++GY+ FC H+ +V +F + + + L I  ENEHLIRT Y+A + ++LPVL R+FP + V +    AK+LD+ILY+RE+I++EN ++G +   N + APW I+ +KAQDV  ELPM P T +RN+LGK  GGSGVPLD   Y E+V +W  HA I
Sbjct:   46 RFQSADLKDGYAPFCKHVFLVNDFTNARVNVLPITEENEHLIRTKYEARNDKELPVLARFFPQNLVGDDLPVAKYLDLILYSREQINKENASQGRDP--NPASAPWNIVSIKAQDVPDELPMNPITAMRNSLGKAEGGSGVPLDRKAYAEAVNYWKDHAVI 204          
BLAST of EWM22327.1 vs. NCBI_GenBank
Match: gi|1210521950|dbj|GAX19385.1| (hypothetical protein FisN_4Lh364 [Fistulifera solaris])

HSP 1 Score: 161.384 bits (407), Expect = 2.920e-45
Identity = 78/159 (49.06%), Postives = 107/159 (67.30%), Query Frame = 0
Query:  107 RTKTPPLREGYSSFCYHLIVPN-FAHLKASYLKIVPENEHLIRTAYDANSPEDLPVLTRYFPASAVKEMTGPAKFLDVILYTREEIHQENIARGMEHLNNASDAPWGIMRVKAQDVERELPMLPTTLIRNALGKGFGGSGVPLDVDRYKESVGFWMHHA 264
            R +   L++GY+ FC H+ V N F     + L I PENE  +R+ Y+A + ++LPVLTR+FPA  V +    AKFLD+ILY+RE+I++EN A+G     N   APWGI+ +KAQD + ELPM P T +RNALGK  GGSG+P+D  +Y E+V +W  HA
Sbjct:   80 RYRGSNLKDGYAPFCKHIFVENDFTDAVVNVLPITPENESKLRSKYEARNDKELPVLTRWFPAELVGKDLPKAKFLDLILYSREQINKENAAQG--RAENVVTAPWGIVSIKAQDADHELPMTPITAMRNALGKEEGGSGIPIDRQQYMEAVNYWKDHA 236          
BLAST of EWM22327.1 vs. NCBI_GenBank
Match: gi|1210512588|dbj|GAX28445.1| (hypothetical protein FisN_4Hh364 [Fistulifera solaris])

HSP 1 Score: 160.999 bits (406), Expect = 4.494e-45
Identity = 77/155 (49.68%), Postives = 107/155 (69.03%), Query Frame = 0
Query:  113 LREGYSSFCYHLIVPN-FAHLKASYLKIVPENEHLIRTAYDANSPEDLPVLTRYFPASAVKEMTGPAKFLDVILYTREEIHQENIARGMEHLNNASDAPWGIMRVKAQDVERELPMLPTTLIRNALGKGFGGSGVPLDVDRYKESVGFWMHHAAI 266
            L+ GY+ FC HL V N F     + L I+PENE  +R+ Y+A + ++LPVLTR+FPA  V +    AK+LD+ILY+RE+I++EN A+G     N   APWGI+ +KAQD + ELPM P T +RNALGK  GGSG+P+D  +Y E+V +W +HA +
Sbjct:   86 LKGGYAPFCKHLFVENDFTDAVVNVLPIIPENESKLRSKYEARNDKELPVLTRWFPAELVGKDLPKAKYLDLILYSREQINKENAAQG--RAENPVTAPWGIVSIKAQDADHELPMTPITAMRNALGKEEGGSGIPIDRQQYMEAVNYWKNHATV 238          
The following BLAST results are available for this feature:
BLAST of EWM22327.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102824|gb|EWM22327.1|0.000e+0100.00Protein of unknown function DUF3228 [Nannochlorops... [more]
gi|298707970|emb|CBJ30341.1|8.537e-5150.00flagellar associated protein [Ectocarpus siliculos... [more]
gi|290996712|ref|XP_002680926.1|5.833e-4850.00predicted protein [Naegleria gruberi] >gi|28409454... [more]
gi|922869556|gb|KOO35654.1|3.081e-4751.28flagellar associated protein [Chrysochromulina sp.... [more]
gi|585110008|gb|EWM27735.1|7.212e-4646.52Protein of unknown function DUF3228 [Nannochlorops... [more]
gi|118356530|ref|XP_001011521.1|1.710e-4550.32flagellar associated protein [Tetrahymena thermoph... [more]
gi|1173937464|gb|OQR88253.1|1.800e-4546.99hypothetical protein THRCLA_10388 [Thraustotheca c... [more]
gi|219113855|ref|XP_002186511.1|1.856e-4548.45predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210521950|dbj|GAX19385.1|2.920e-4549.06hypothetical protein FisN_4Lh364 [Fistulifera sola... [more]
gi|1210512588|dbj|GAX28445.1|4.494e-4549.68hypothetical protein FisN_4Hh364 [Fistulifera sola... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8385rna8385Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications