rna8385, rna8385 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8385
Unique Name	rna8385
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1269
Alignment location	KK037248.1:542912..544074 +

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF3228
Orig transcript id	gnl\|cribi\|Naga_100118g23.2754.mrna
Orig protein id	gnl\|cribi\|Naga_100118g23.2754
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:542912..544074 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100118g23	gene8125	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8385	rna8385-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22327.1	cds8358	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:542912..544074+
coding sequence from alignment at KK037248.1:542912..544074+

mRNA sequence

>rna8385 ID=rna8385|Name=rna8385|organism=Nannochloropsis gaditana|type=mRNA|length=1269bp
ACTACAACGGATGTAACAAACATGCGTGCGTGTGCAGAGGAGGGTTGTTA
CATGGCCGTCCCCCTTTTTGATTCTCATGCTCTTTGTTCCCCCTCCGGCC
AGATCCACTACGTGGCTCCGACATCCATGAAGCTGTCCAGCATGTTCACC
CTGCCTGCTACCTCCTTGCTTCTCACTGTCCTCGTGGGAGCGCCCTGCCT
TTCGCACGCCTACATCCGGCCTTTGCACATGTCCCAAAGCCAGCCCCAGC
AGTCGATGTCCCAGCCGGCGGCGTCCTCCCCTTCCACCTCCTCCGCGACC
TCCCCTACCTTTCTTGCTGGCATTGACCGTCGTAACCTATTGACCAAAGG
CTTTCTGGGGGGTGCCGCGGCTGCTTTCACTGGCACATTTACGTTGACCA
CGGGAGCCCAAAAGGCTGGCGCAGACGTACCTGCGGAAGGGATTGAGGCA
CCTGATTTTTCCCTTCCCTCTAGCTTGGGGAAGCCTTTGTCTTTGGCAGA
TTTGACGAAAGGCGGCAAATACACTGTGCTTTACTTCTTCCCTCAGGTCT
TCACAAGCTCCTGCACACTGGAGGCGAAGGCGTTTCAGCGCGACATTGAC
AACTACAAGAAATTGAACGCCCAGATCGTGGGTGTCTCGGTGGACGAATC
GGACAAACAAACAGATTTTAAATCCGAGTGCGGCCTGGACTTTATTCTGC
TCAGTGACAAGGGCGCCAAGGTCTCGGAGGCCTACGGGTCCGCGCTGGAC
ATTCCTTTCTTGGGCCGCTTCTCGAACCGCCAGACGTACATCATCTCTCC
GGATGGGAAGCTGGTCAAAGTCTTCACAAACGTGGAGTCGAAGGTGAAGA
AGCATTCTGAAGAGGTCTTGGAGGCCTTGAAGGCACTGCAAGCTTGAGGA
CCTGCCACTATAGAATTCTCTTTTGAGGGATGTACGGCCGTGGGTCGTGC
CATCAGGGGACTTCAAGCTGGAAAGCCGCCACTGGAAGGAAGGGATGTGG
TGGGAATGGGGGAGGGGTAAATCGGACAAGGATGGTCTTATGGTTTGAAA
TCCTGGCCGGAATCGTGTGGAAGGGCAATGACCCGATCCAATGTGTGCTC
AGTGGTTTCTAGAATTACTACGTGATGATTTTTTCCCCCTGCATTCGATT
TAGAGACACCTGGGTATGAAAACGCAAGAGGTGGACCTGGATGTATACGT
ATCTATTTTCCTATCAACAAAGGGCGTGGATGTGGGAAAGAAACAACTAC
AACCTCCTGAAGCGAACAG

protein sequence of rna8385

>rna8385-protein ID=rna8385-protein|Name=rna8385|organism=Nannochloropsis gaditana|type=polypeptide|length=267bp
MKKLAWPLPIRIRSSRLWNQLPSASLRTLVLSGPRFTCIQRTSRLSSLFA
VYDQHVCLRSQFIGFTLGISLICLPIATSIPSKISLQITAFKKNLLPSLT
HVDNYLRTKTPPLREGYSSFCYHLIVPNFAHLKASYLKIVPENEHLIRTA
YDANSPEDLPVLTRYFPASAVKEMTGPAKFLDVILYTREEIHQENIARGM
EHLNNASDAPWGIMRVKAQDVERELPMLPTTLIRNALGKGFGGSGVPLDV
DRYKESVGFWMHHAAIR

mRNA from alignment at KK037248.1:542912..544074+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8385 ID=rna8385|Name=rna8385|organism=Nannochloropsis gaditana|type=mRNA|length=1163bp|location=Sequence derived from alignment at KK037248.1:542912..544074+ (Nannochloropsis gaditana)
ATGAAGAAATTAGCATGGCCGCTGCCGATACGAATCAGAAGCTCGCGACT
TTGGAACCAATTGCCCTCCGCCAGTTTACGGACCCTGGTTTTGTCGGGCC
CAAGATTTACTTGCATCCAAAGGACTTCGAGGCTAAGGTATGGAAGTAGA
GGGTCTGACACGGAAATCAGGAGTTCAAAGTGCTGGTTTTTCTGGTGTTG
TCGGACCACGATGACGTATGGTCTTCtcgctccatccctcccacccttcc
agCTCTTTATTTGCCGTATATGATCAGCATGTATGCCTGAGGAGCCAGTT
TATAGGCTTTACTCTTGGCATATCTTTGATATGTCTGCCCATTGCGACTT
CAATTCCAAGTAAAATTTCTTTACAAATAACCGCCTTCAAGAAAAATCTT
TTGCCATCATTGACGCACGTGTACGCTGACTAGATCATCCATTCATGATC
ATCCCCTTGTCCTGATGATATAATTTTCCAATACTGAATATTTGAACACC
TTTTCGGGTCTCATCTTAGGTCGATAACTATCTTCGGACGAAAACCCCCC
CACTTCGCGAAGGGTACAGCTCCTTTTGTTATCATTTGATTGTCCCCAAC
TTTGCTCATTTGAAGGCGTCGTACCTGAAAATTGTTCCTGAAAACGAGCA
CTTGATTCGGACCGCATACGATGCGAACAGTCCAGAAGATCTTCCTGTCC
TGACTCGCTATTTCCCGGCGTCGGCCGTGAAGGAGATGACGGGTCCCGCC
AAGTTCTTGGACGTCATTCTGTACACCCGGGAGGAGATTCATCAGGAGAA
TATAGTACGTCTCAACTGAGGGTACCTCGGCTACCTCCAGCCTCGCCCCC
GCACAAGGCATGTAAACTACCATGCTTAcgtcttccatccctccctccct
ccttccctccctccttccctccctccttccctccctccttcccccaggcC
CGTGGCATGGAGCATTTGAACAACGCGTCCGACGCGCCCTGGGGGATCAT
GCGCGTGAAGGCCCAGGACGTGGAGCGGGAGTTACCCATGCTCCCTACCA
CCCTGATCCGGAACGCGCTCGGGAAAGGATTTGGGGGCTCGGGGGTGCCC
TTGGACGTGGATCGGTATAAGGAAAGCGTCGGGTTTTGGATGCACCATGC
GGCGATTCGGTAG

Coding sequence (CDS) from alignment at KK037248.1:542912..544074+

>rna8385 ID=rna8385|Name=rna8385|organism=Nannochloropsis gaditana|type=CDS|length=3216bp|location=Sequence derived from alignment at KK037248.1:542912..544074+ (Nannochloropsis gaditana)
ATGAAGAAATTAGCATGGCCGCTGCCGATACGAATCAGAAGCTCGCGACT
TTGGAACCAATTGCCCTCCGCCAGTTTACGGACCCTGGTTTTGTCGGGCC
CAAGATTTACTTGCATCCAAAGGACTTCGAGGCTAAGCTCTTTATTTGCC
GTATATGATCAGCATGTATGCCTGAGGAGCCAGTTTATAGGCTTTACTCT
TGGCATATCTTTGATATGTCTGCCCATTGCGACTTCAATTCCAAGTAAAA
TTTCTTTACAAATAACCGCCTTCAAGAAAAATCTTTTGCCATCATTGACG
CACGTCGATAACTATCTTCGGACGAAAACCCCCCCACTTCGCGAAGGGTA
CAGCTCCTTTTGTTATCATTTGATTGTCCCCAACTTTGCTCATTTGAAGG
CGTCGTACCTGAAAATTGTTCCTGAAAACGAGCACTTGATTCGGACCGCA
TACGATGCGAACAGTCCAGAAGATCTTCCTGTCCTGACTCGCTATTTCCC
GGCGTCGGCCGTGAAGGAGATGACGGGTCCCGCCAAGTTCTTGGACGTCA
TTCTGTACACCCGGGAGGAGATTCATCAGGAGAATATAgcCCGTGGCATG
GAGCATTTGAACAACGCGTCCGACGCGCCCTGGGGGATCATGCGCGTGAA
GGCCCAGGACGTGGAGCGGGAGTTACCCATGCTCCCTACCACCCTGATCC
GGAACGCGCTCGGGAAAGGATTTGGGGGCTCGGGGGTGCCCTTGGACGTG
GATCGGTATAAGGAAAGCGTCGGGTTTTGGATGCACCATGCGGCGATTCG
GTAGATGAAGAAATTAGCATGGCCGCTGCCGATACGAATCAGAAGCTCGC
GACTTTGGAACCAATTGCCCTCCGCCAGTTTACGGACCCTGGTTTTGTCG
GGCCCAAGATTTACTTGCATCCAAAGGACTTCGAGGCTAAGCTCTTTATT
TGCCGTATATGATCAGCATGTATGCCTGAGGAGCCAGTTTATAGGCTTTA
CTCTTGGCATATCTTTGATATGTCTGCCCATTGCGACTTCAATTCCAAGT
AAAATTTCTTTACAAATAACCGCCTTCAAGAAAAATCTTTTGCCATCATT
GACGCACGTCGATAACTATCTTCGGACGAAAACCCCCCCACTTCGCGAAG
GGTACAGCTCCTTTTGTTATCATTTGATTGTCCCCAACTTTGCTCATTTG
AAGGCGTCGTACCTGAAAATTGTTCCTGAAAACGAGCACTTGATTCGGAC
CGCATACGATGCGAACAGTCCAGAAGATCTTCCTGTCCTGACTCGCTATT
TCCCGGCGTCGGCCGTGAAGGAGATGACGGGTCCCGCCAAGTTCTTGGAC
GTCATTCTGTACACCCGGGAGGAGATTCATCAGGAGAATATAgcCCGTGG
CATGGAGCATTTGAACAACGCGTCCGACGCGCCCTGGGGGATCATGCGCG
TGAAGGCCCAGGACGTGGAGCGGGAGTTACCCATGCTCCCTACCACCCTG
ATCCGGAACGCGCTCGGGAAAGGATTTGGGGGCTCGGGGGTGCCCTTGGA
CGTGGATCGGTATAAGGAAAGCGTCGGGTTTTGGATGCACCATGCGGCGA
TTCGGTAGATGAAGAAATTAGCATGGCCGCTGCCGATACGAATCAGAAGC
TCGCGACTTTGGAACCAATTGCCCTCCGCCAGTTTACGGACCCTGGTTTT
GTCGGGCCCAAGATTTACTTGCATCCAAAGGACTTCGAGGCTAAGCTCTT
TATTTGCCGTATATGATCAGCATGTATGCCTGAGGAGCCAGTTTATAGGC
TTTACTCTTGGCATATCTTTGATATGTCTGCCCATTGCGACTTCAATTCC
AAGTAAAATTTCTTTACAAATAACCGCCTTCAAGAAAAATCTTTTGCCAT
CATTGACGCACGTCGATAACTATCTTCGGACGAAAACCCCCCCACTTCGC
GAAGGGTACAGCTCCTTTTGTTATCATTTGATTGTCCCCAACTTTGCTCA
TTTGAAGGCGTCGTACCTGAAAATTGTTCCTGAAAACGAGCACTTGATTC
GGACCGCATACGATGCGAACAGTCCAGAAGATCTTCCTGTCCTGACTCGC
TATTTCCCGGCGTCGGCCGTGAAGGAGATGACGGGTCCCGCCAAGTTCTT
GGACGTCATTCTGTACACCCGGGAGGAGATTCATCAGGAGAATATAgcCC
GTGGCATGGAGCATTTGAACAACGCGTCCGACGCGCCCTGGGGGATCATG
CGCGTGAAGGCCCAGGACGTGGAGCGGGAGTTACCCATGCTCCCTACCAC
CCTGATCCGGAACGCGCTCGGGAAAGGATTTGGGGGCTCGGGGGTGCCCT
TGGACGTGGATCGGTATAAGGAAAGCGTCGGGTTTTGGATGCACCATGCG
GCGATTCGGTAGATGAAGAAATTAGCATGGCCGCTGCCGATACGAATCAG
AAGCTCGCGACTTTGGAACCAATTGCCCTCCGCCAGTTTACGGACCCTGG
TTTTGTCGGGCCCAAGATTTACTTGCATCCAAAGGACTTCGAGGCTAAGC
TCTTTATTTGCCGTATATGATCAGCATGTATGCCTGAGGAGCCAGTTTAT
AGGCTTTACTCTTGGCATATCTTTGATATGTCTGCCCATTGCGACTTCAA
TTCCAAGTAAAATTTCTTTACAAATAACCGCCTTCAAGAAAAATCTTTTG
CCATCATTGACGCACGTCGATAACTATCTTCGGACGAAAACCCCCCCACT
TCGCGAAGGGTACAGCTCCTTTTGTTATCATTTGATTGTCCCCAACTTTG
CTCATTTGAAGGCGTCGTACCTGAAAATTGTTCCTGAAAACGAGCACTTG
ATTCGGACCGCATACGATGCGAACAGTCCAGAAGATCTTCCTGTCCTGAC
TCGCTATTTCCCGGCGTCGGCCGTGAAGGAGATGACGGGTCCCGCCAAGT
TCTTGGACGTCATTCTGTACACCCGGGAGGAGATTCATCAGGAGAATATA
gcCCGTGGCATGGAGCATTTGAACAACGCGTCCGACGCGCCCTGGGGGAT
CATGCGCGTGAAGGCCCAGGACGTGGAGCGGGAGTTACCCATGCTCCCTA
CCACCCTGATCCGGAACGCGCTCGGGAAAGGATTTGGGGGCTCGGGGGTG
CCCTTGGACGTGGATCGGTATAAGGAAAGCGTCGGGTTTTGGATGCACCA
TGCGGCGATTCGGTAG

Synonyms

Publications