rna8379, rna8379 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8379
Unique Name	rna8379
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2880
Alignment location	KK037248.1:529957..532278 -

Link to JBrowse

Properties


Property Name	Value
Product	Amino acid transporter, transmembrane
Orig transcript id	gnl\|cribi\|Naga_100118g16.2758.mrna
Orig protein id	gnl\|cribi\|Naga_100118g16.2758
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:529957..532278 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100118g16	gene8119	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22331.1	cds8352	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8379	rna8379-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:529957..532278-
coding sequence from alignment at KK037248.1:529957..532278-

mRNA sequence

>rna8379 ID=rna8379|Name=rna8379|organism=Nannochloropsis gaditana|type=mRNA|length=2880bp
GTTCTCGTGTGTGGTCCCCTCCATATGGCTGACGCCGCTGTCACGCCGCG
CCGGGATGAGCTCCCCCTTTTCTCTCGCCATTGAATCAACGTGATTCATT
GCCAAGTTGCACGATTTGTTCCTTCACGTGCCCGCGAAACAGGCCATATA
TATCTCTCAATGCTCAACTTATGCATTTTCATTACAAATCTTACACTTGC
GCAGGCGCTGGCACAGTTGAGGACCAGCCACAAACAGCCGTAATTTACGG
GAAAGTAGAAATTCCTAACCACCAAGTCTCGCAGGTGCTTCTTTGCGCTC
CAACACACCACAACTATGGCGGCAGCCACGGAATCGCTTTTCTTGGTGGC
GTCTAACATCCACTTTTCGGATGACATGTCTCTTCCGCGGTTTGGCACAA
GTACCCGCCTCCTTGCCGCGACCTGCTCATGCTCTTCCACCCCTTGTGCT
GCGCACGCCGCAACTTCAGTGGATCAGGCCGCGTCAGTGGAGGACGGGGA
CGCCTTGGAGCCTCAAGATGACGTCTTTTACTTGAGTCGTCTCAATGATC
CCACGACTTACTTTTTTCAGTGGATCTGCAAGCGGTACGGCCTCACTGTA
AAGGCCGAGCCGCACTCGTGCCCGATATGCCTCGAGACATCGGAAAATAG
CATCCAGTTGTCGTGTGGACACACCTTTTGTCGTCAATGTCTAAAGGCGG
CTGCTGAACAAAAAATGTCCTCGTGCGCCCTGTGCCGAAAGTCGCACACC
CTCGATCCTGACGTGCTTCGGCAGCAATTTCAGACCCAACGTTTTGCCAA
CATGTCCTGGCGTCTCGGAAACACGCGAGCCACCCGTGTCTTCTCCAAGC
CAAGTTGGGAGGCCCTCTTTTGTGCGGGTAGCGGTGGAGCGGGGAACGCT
GGGAAATGTGACGTAGGGGATCGTGCCTCTTCCCCGTCCTGTGAGGCGGG
AGAGGCGCCTACAGGGGGCGGAGGCAGTGTGGGCGTGACCAAAGGGAAAG
GAGGCAAAGAGACAGGCCGGGGGTACGTGGGCCCGGACATTGGTGGCTTG
CCGCACCGGTTGTTGATGCGACGGGCCGCCAAGAGCGTTAGGCGGGCCTT
CGTCTCCCCTGACCCCGACGTCGGAGGATCCACGCGAGCCGAGCTCCAGC
GTCGATGGTCCATGCTGATGGGCGGAAAAGCAACCGACTCCAAGCAATGG
AAGGGAGGAGTCGCCGTCCTGACCGAGGAGGCGGGGGCGGAAAGCGTGGC
AGGGTTGACGAGGCGGTGGGGGAGGGGAAGGGAAGGGCAGGGAGGGCAGA
CGGAAGGCATGGGGTCGCGTTGGTCGGACTTGATACGGCAAGGTCGAGGG
AAGGAGGGAGGGGTAGGAGGGGAGGAACAGGCGGCATTGACAGCCTGGTG
GAGGGAGGCGCGGGGCCAGGAAAGCGCCGAGGTTGGCGCGGCAAAGGTTC
CGACCTTGGCGGCGGCGTGGTCCCTGCTCGTCCCCGAGACTCCCGGCTCC
CTCGCCCCTTGGGCCGTTCCCACCACGGACTGCGGGGGCTTGTCGGTGGC
GGCGCTGAAAGCCCGGGCCCAGCGCCTCTTCCTTCCCCCCGTCCTCGACG
CGACCTCGGACGCAGGGGTAGGCGCCTTGGCCCGAGAGGAGATGCAGGCC
CGTTGGGATGCATGCTTCCTCTCGTCACGCGCGACGTTGCCGTGCCTGAA
TGCGGGGGGTAGCGACGTGGAGGAGCTGGCGCACCGTTGGGGAAAATTGA
TGGGCGTGGATGTGGGGGAGGAGGTTGGGGGGAAACCGTGGGCGGCGCTG
GCGGCACGTTGGGAAGAAAGGAGCGTGGTGGGTGCGGACAGAGAGGGGGG
GGACGTGGGAGGTTTGGATTCGAAGACTCTCAAGACGCAGTGGGCCACAA
CGAATGTAGGAGGGAAGGTGAGGTTAACGGAGGAGGCGGGGGCCTGTGGG
ACGGAAGTGTTGGAAGGCCGGTGGGGGATGGGGAGGGAGGGAAACAAGCA
CGGTTGAGGTCGACGCAGAAGGGGAGGTGGTGACAGATAGGGGGGTCAAA
TGGCTGTACATAGTGAGGAAACAGCACGTATCGGGGTCGGGGGCGAAGGA
GGCTGGTTAGTGGAGAGGGTGGGAGGGCACCGAGGTGGAGAGGATTCGAT
GGGTCGTAGTGGGGGGGGGGGGGGGAGTTTAAGGCCTACTTTGTTTGAAA
AGCAAGCAGGCGCGCCAGGTTGAGAAACATGACGGGAAGGAAAGCTATGG
ACGAACTGGAAAAAGCGGCGTCCCAGATACAGGGCACGTGTACATACCCG
GAGGTGGGAAAAAAAACGGGGGAGGAACGCCATGAACACCTCGAGAAAGT
CGAGAAAGTCGAGTTAGTCCACGCGGTATCTAGGAGGTTAGGAGTATGAT
GGGGGAAGAGGAAATGGAGATACCGTTGAATTTGAGAGGCGGCTGAGGGT
TGGCTTTGGTGGGGTGGATGCATGGCGGTGGGAGAAGAAGATTGATAGAG
ACGACGAAGTGGAGGCAAGAGACGAGCATTGGTACACACGACGCAGTGGA
GGCGATAGGAGATGGTCCATAGACACGACGCAGTGGGAGGGGTAGGTGAA
AGGCGATACATGAGCAGGAGCAGTAGAGGAGATAATCCATTTTCAACAGA
GAATCGAAGCGGTGGGAACAGTAGTGGCATCGACGACTGGCAGACCAGTC
CGCGTGTGCTATAGAGAAAGCCGACTCACAGTGGCGAATGTGCGATAGCG
GAAGCGATAGGGAGGGGAGGACGAGGGAGGGCAAGATGGCAAGAATCGGA
AGGTAAAAAAATAATGACAGGACTGGTACCTGCCAAGCTTTGTTGGATGC
AAAGGCGTGTGTATGGATATTTGAAGAGCC

protein sequence of rna8379

>rna8379-protein ID=rna8379-protein|Name=rna8379|organism=Nannochloropsis gaditana|type=polypeptide|length=551bp
MIQEPDATPSNDNSADLLLRFLPAGKASAESDLPHLPYAPSGASPPRFHP
SSHSFPTTKPRKTLHWAMAGLILFSFTAPGALVSVPFAVGTTGYVLSLLI
LSLFTAATIAGCLMLLEIYQCNPYCQNLPELGAVAMGSVRGRRLAATVQL
SNFVGFLPVSLTINALALQGTLGVAPEHSCLDYYILGISVLCLLSTQARA
LSNTQALSLLSLTAILAAGAIQLGVAFSPSLMPPLPSSPSSSARMFGHPL
LPHASPATEVVRTLLGVTCMAWSFVPCFLVVELASAMPAPHHFPRALFLA
AGLLFLLFLGVGFPLVHRWGWDLPDPSYALPAWPAAASVSRVMHALVLLA
NLVSYTLDSVPLVRYCQRVWRPRFNLQDWSPRALGLYLLLSLPSFLFGVL
AALVVGNLLALLAFVSALSVPWVTQILPALFYHSWRRRLSSASSRSYAHP
ASAYDRPDDWILALPPSLPPSLPPSSSTSPLGRLSLLLPPPVAGGIHAPL
SVKEKFLLVFVASVGVMNFLICAAAAVGKVSIAELRGKTQIGCGAWTLYS
D

mRNA from alignment at KK037248.1:529957..532278-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8379 ID=rna8379|Name=rna8379|organism=Nannochloropsis gaditana|type=mRNA|length=2322bp|location=Sequence derived from alignment at KK037248.1:529957..532278- (Nannochloropsis gaditana)
GTGTGATGTGAAAATTCGCGTGCTACAGTACCTCATCAGGTTGGTCGCTG
TCCCAGCCTGGTCAGGTCCGTGGGAAGAAATCGACAGGGTGCTCACCGCA
CATCCCTTTACCATAAGGGAATAACCGCATTATTGAACCCTGCTTGTCTT
GTTACATTTCTTGTTCACCTCGTTGCCTCTTTTTGGCCACACATCGCAGG
CAAAAAACCTCGCAAGACTACGGACACCCTTCCTCTCCTCAGGGCGCCAC
CAAGGGCAAAAACAAGCCTCCTCATGGAAGCGTTTTGTCCCCGTTCAGTC
ATGTTTTGACCGCGCACGTAGCAAGTGGAGGAACGTCTGGGGAGGGCCAT
TCCTCTCGAGAAGGAGTGTCGCCCGTCCATTCTGCCGAGCACGTACTGTC
ACAAGCTAGACCATGATACAGGAACCTGATGCCACGCCCAGCAATGACAA
CTCTGCTGACCTTTTGCTTCGCTTCCTCCCCGCTGGCAAAGCCTCGGCGG
AGAGCGACCTCCCTCACCTGCCCTACGCCCCAAGCGGTGCTTCCCCGCCC
CGTTTCCATCCTTCCTCCCACTCGTTCCCGACGACGAAACCCCGCAAAAC
ATTGCATTGGGCCATGGCCGGCCTCATCCTCTTCTCTTTCACTGCCCCGG
GCGCCCTGGTCAGCGTGCCTTTCGCCGTCGGGACCACGGGCTACGTCTTG
AGCCTCCTCATCTTGAGCCTTTTCACCGCCGCCACCATCGCGGGCTGTCT
GATGCTCTTGGAGATATACCAATGCAACCCCTACTGCCAAAATCTGCCGG
AGTTGGGCGCCGTGGCCATGGGAAGCGTGCGGGGCCGACGGCTCGCGGCG
ACGGTGCAACTCAGCAACTTCGTCGGCTTCCTGCCCGTCTCGCTCACCAT
CAACGCCCTGGCCTTGCAAGGGACTCTGGGCGTGGCGCCTGAGCATTCCT
GCCTGGATTACTATATCCTCGGCATCAGCGTGCTCTGCCTCTTGAGCACT
CAGGCCCGGGCGCTCTCCAACACGCAAGCCCTCTCCCTCCTCTCCCTCAC
CGCCATCCTGGCCGCGGGGGCCATCCAGCTCGGCGTCGCCTTCTCCCCCT
CCCTTATGCCACCCCTACCGTCCTCCCCGTCCTCCTCCGCCCGCATGTTC
GGCCATCCTCTCCTCCCCCACGCCTCCCCCGCCACGGAGGTCGTGCGCAC
CCTCCTGGGCGTCACCTGCATGGCTTGGTCCTTCGTGCCCTGCTTCCTGG
TCGTCGAACTCGCCTCCGCCATGCCCGCGCCCCACCACTTCCCTCGCGCC
CTTTTTCTGGCGGCGGGCCTTCTCTTCCTTCTCTTCTTGGGCGTGGGCTT
TCCGTTGGTGCATCGGTGGGGGTGGGACCTTCCCGACCCCTCCTACGCCC
TCCCGGCGTGGCCGGCCGCCGCCTCCGTTTCACGCGTCATGCATGCCCTT
GTCCTCCTCGCCAACCTGGTCTCTTACACCCTCGACTCCGTGCCTCTCGT
CCGCTACTGCCAACGGGTCTGGCGCCCGCGCTTCAACCTCCAAGATTGGT
CCCCCCGGGCGCTTGGCCTCTACCTCCTCCTCAGCCTGCCCTCCTTCCTC
TTCGGTGTCCTGGCTGCCCTGGTCGTCGGGAACCTCCTGGCCCTTCTCGC
CTTTGTCAGCGCCTTGTCCGTGCCATGGGTGACGCAGATTCTTCCCGCGC
TTTTTTACCACTCGTGGCGCCGGCGGCTTTCCTCCGCCTCCTCCCGCTCC
TACGCCCACCCTGCGTCGGCCTATGACCGCCCCGACGACTGGATTCTCGC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCTCGACCTCGC
CGTTGGGCCGCCTTTCCCTCCTGCTCCCTCCCCCTGTCGCGGGCGGCATC
CACGCCCCTCTCTCCGTGAAGGAAAAATTTCTGCTCGTCTTTGTCGCTTC
GGTGGGGGTCATGAATTTCCTAATTTGTGCGGCGGCGGCGGTGGGGAAAG
TGAGCATCGCGGAGTTGCGGGGGAAGACCCAGATCGGGTGTGGCGCGTGG
ACCCTTTACAGTGATTGATTTGGAGGAGGCGGGGAAGGATGCGGGGGGAG
GTAGAGGATGGGGAAGGAAAGAAGTGTTGGAAGGGACAAGAGAAAGCGAA
GGCATGTAGCCAGAAGGGATGGAAAAGGATGGATGCCGGCTGTTGCTGTC
TCAAAATAGCACGGGACTGAAGTAAACTGTGGAAAGCGTATCGTCACAGC
GAGGGTTCCATCGTAGGAAGCCACAAAACAGGCAAAGGCTCTTCAAATAT
CCATACACACGCCTTTGCATCC

Coding sequence (CDS) from alignment at KK037248.1:529957..532278-

>rna8379 ID=rna8379|Name=rna8379|organism=Nannochloropsis gaditana|type=CDS|length=1656bp|location=Sequence derived from alignment at KK037248.1:529957..532278- (Nannochloropsis gaditana)
ATGATACAGGAACCTGATGCCACGCCCAGCAATGACAACTCTGCTGACCT
TTTGCTTCGCTTCCTCCCCGCTGGCAAAGCCTCGGCGGAGAGCGACCTCC
CTCACCTGCCCTACGCCCCAAGCGGTGCTTCCCCGCCCCGTTTCCATCCT
TCCTCCCACTCGTTCCCGACGACGAAACCCCGCAAAACATTGCATTGGGC
CATGGCCGGCCTCATCCTCTTCTCTTTCACTGCCCCGGGCGCCCTGGTCA
GCGTGCCTTTCGCCGTCGGGACCACGGGCTACGTCTTGAGCCTCCTCATC
TTGAGCCTTTTCACCGCCGCCACCATCGCGGGCTGTCTGATGCTCTTGGA
GATATACCAATGCAACCCCTACTGCCAAAATCTGCCGGAGTTGGGCGCCG
TGGCCATGGGAAGCGTGCGGGGCCGACGGCTCGCGGCGACGGTGCAACTC
AGCAACTTCGTCGGCTTCCTGCCCGTCTCGCTCACCATCAACGCCCTGGC
CTTGCAAGGGACTCTGGGCGTGGCGCCTGAGCATTCCTGCCTGGATTACT
ATATCCTCGGCATCAGCGTGCTCTGCCTCTTGAGCACTCAGGCCCGGGCG
CTCTCCAACACGCAAGCCCTCTCCCTCCTCTCCCTCACCGCCATCCTGGC
CGCGGGGGCCATCCAGCTCGGCGTCGCCTTCTCCCCCTCCCTTATGCCAC
CCCTACCGTCCTCCCCGTCCTCCTCCGCCCGCATGTTCGGCCATCCTCTC
CTCCCCCACGCCTCCCCCGCCACGGAGGTCGTGCGCACCCTCCTGGGCGT
CACCTGCATGGCTTGGTCCTTCGTGCCCTGCTTCCTGGTCGTCGAACTCG
CCTCCGCCATGCCCGCGCCCCACCACTTCCCTCGCGCCCTTTTTCTGGCG
GCGGGCCTTCTCTTCCTTCTCTTCTTGGGCGTGGGCTTTCCGTTGGTGCA
TCGGTGGGGGTGGGACCTTCCCGACCCCTCCTACGCCCTCCCGGCGTGGC
CGGCCGCCGCCTCCGTTTCACGCGTCATGCATGCCCTTGTCCTCCTCGCC
AACCTGGTCTCTTACACCCTCGACTCCGTGCCTCTCGTCCGCTACTGCCA
ACGGGTCTGGCGCCCGCGCTTCAACCTCCAAGATTGGTCCCCCCGGGCGC
TTGGCCTCTACCTCCTCCTCAGCCTGCCCTCCTTCCTCTTCGGTGTCCTG
GCTGCCCTGGTCGTCGGGAACCTCCTGGCCCTTCTCGCCTTTGTCAGCGC
CTTGTCCGTGCCATGGGTGACGCAGATTCTTCCCGCGCTTTTTTACCACT
CGTGGCGCCGGCGGCTTTCCTCCGCCTCCTCCCGCTCCTACGCCCACCCT
GCGTCGGCCTATGACCGCCCCGACGACTGGATTCTCGCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCTCCTCGACCTCGCCGTTGGGCCGCC
TTTCCCTCCTGCTCCCTCCCCCTGTCGCGGGCGGCATCCACGCCCCTCTC
TCCGTGAAGGAAAAATTTCTGCTCGTCTTTGTCGCTTCGGTGGGGGTCAT
GAATTTCCTAATTTGTGCGGCGGCGGCGGTGGGGAAAGTGAGCATCGCGG
AGTTGCGGGGGAAGACCCAGATCGGGTGTGGCGCGTGGACCCTTTACAGT
GATTGA

Synonyms

Publications