rna8373, rna8373 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8373
Unique Name	rna8373
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2183
Alignment location	KK037248.1:514680..517757 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100118g9.2743.mrna
Orig protein id	gnl\|cribi\|Naga_100118g9.2743
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:514680..517757 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100118g9	gene8113	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8373	rna8373-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22316.1	cds8346	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:514680..517757+
coding sequence from alignment at KK037248.1:514680..517757+

mRNA sequence

>rna8373 ID=rna8373|Name=rna8373|organism=Nannochloropsis gaditana|type=mRNA|length=2183bp
ATGGAGCGACTTCCGGTACAGTGTGAGTTTCGAGATGAGAAACACGCCCT
CACGTTCCGTTTTTTTTACAATTCACAGAGATTCCATACTTCCAGACGAT
GCAGCCACAGCCTCCATAGCATTACTTCCCTACTGGAGGACGTCGTTGTG
CGGTTCTTGTCATGGCCTCTGACTTTTCCGCCTTCCGGGCACCCCCCCCC
CGCCCTCCTCGAAGCCCCGCACCGTGACTTATCCCAACCTGGAGGTCATC
ATTTCAAACCTGGGCAGCTTTTGCACGGCCTACAATATCGTCAACATCTC
CTTGGTCTTACTCTTGATGGATGGTCTCTACCCGTTATCCGAGTCGCACA
AGTCCCTGTGTGCCTCGACGATGTTTGCGGGTATGATCATCGGCCAACTT
GTAGGGGGCTTCTTGGGTGATGTCATGGGAGTGTCCCGTGCCTTCACCTT
GACCATCGTCCTTCAAGTGGTCGCGGCGCTGGGAAGCACGTTGGTGACGC
CTCCTCAAGTCTACTGGCAGCTGGCAGGGGCACGCTTTGTGCTCGGGATG
GGTGCAGGAGGTGTTTATCCACTGGCTGCGGCCATGTCTTGGAATGCATC
GGCGGTCGCGCGACCCCCGCCTGCCTCTGAGAGATCGGGGGGGCACGAGG
GGACAGAGGGATCAAATGTAGGCCCCATTGAGGCTACCCTTTCTGCAGAT
CACGGTGCTAGACATGGCTGTGAAGGAAGCAAGACGGACCGCCCGGTTGC
GTTGGTCTTCTCCATGCAAGGAGTCGCGTTCGTGACCATGAACGCCGTGG
CACTCGTATTGGCCTTGGTCCTCCCTCTTCAAGCCGACAGGTCCACCGGA
CTTCAATCCTGGGCTCCTCTCACTCAGGCCCTCCCAGACTCATCGTCCAC
GAACCGGGGGGCGGACCAATTTGCTTTCCGATTCCTGCTCGGCCTCGGGG
CCCTGCCAGGGGTCGTCGTCCTGGGCGCAACCTGGTGGATCCACCGGCGC
CGTTCCTTAGGGAGGACAGGGCCAAGCCTTTGCCGCCCCAAGGGCTTTCG
CAAGCCTGCTCGGCCCCGATTGTCCCTTTTGGATGACGTGGTGGAGGACA
CGGCCTCAGGGACAGAGGAGGAGGCACAGGTGGCCCTCGACCCTCCCTCC
CTCCCTCCCTCCCTCCCGTCCTCCTCGTGCAGGCCGAAAGAGGAGGAATT
GGACGCCGGTGCTGGAGCCAGGGCAGCCTCGCACGCCCTGAGGGAGGCCT
TGCGCGACGGAAGAATTCTTCGGGAGCTGGTGGGGTGTTGTCTGACGTGG
TTTTTGTACGATGTGTGCTTCTTTGGGAACACCCTTTTCCAGCCCGTGAT
TGGGACGGCTCTTTTCCAGGACAAGTCGCCCTCGGACGTGCGAAGACATG
ACAACGGGGGTGACCGTGGGGGCGGGCGGAGCAGTGGGGGAGGCGAGGAC
AGCACCCGCCCTTCCTTCTTACTGGAGGCTGAGACCAGCCTCATCCTTGC
TCTCATTGCCCTGCCCGGGTATTTCCTCTCCGTGTGGCTCATTCCTCGTC
TGGGGCCCCGCTTTGTTCAAATTCAGGGATTCGTCATCTGTGCCACCCTG
TACTTGGTGCTGGCCGTGTGCGGAGAGCGGCTGACGAACGCCGGACAAGG
GGGCTGGGCGTTGGTTTTCTTTGGATTGAGCTTCACCTTCTTCAATTTCG
GACCGGGCGCCACCACCTACCTCTTTCCTTCAAAGCTCTTCCCCCGGGAA
GTCAAGGCGACCTTGAATGGAGTGGCGGCAGCTGCGGGCAAGGTGGGGGG
ATGGGTTGGAGGCTACTGCTTCCCTTTGTTGCTGGACGCGTGGACGTTGG
AGGGAGTGTTGGGCATGTGCGCAGCCATTGCCTTGCTGGGTGCGGGTGTC
ACGTGGGGGACATTGGGTTGGGAGGGAGGGAGGGAAGCGGTGACGGAGAA
GGGAGATAAGAAGACCGGGCGGGGAGCGGGGGGGGCCTCGACGCCCTTGT
TGCCGGAGAATGGTGAAGCCAGGGCGGATGAGAAGGACGGAGAGGACGGG
ACAATGATCACGACTGTTTGACAGGCGATTTATTGCGAATAAGTGTAGAA
AATGCCTCCGAATGTTAAAATGAAGCTAATGCCCTCTGTAACATTGCACC
TGAAGACTGCCTTGTTGCAGACGTCGTGAGAAA

protein sequence of rna8373

>rna8373-protein ID=rna8373-protein|Name=rna8373|organism=Nannochloropsis gaditana|type=polypeptide|length=631bp
MSARGMKGQGVDGSRGGGINDLGSRAERQNSSVGNDYRKSSNGNDGRDGR
SAHLGRDKKSRNSASGALTRPASNTGNGGQMEAPAFQQADDELTETLFNQ
FDNYADYLPMDDVVAMMSGWQEAGGEGRGGNGGERSLSDDGQMHLQTPLD
DEVPLPAAVQGMLSHSGASEEGVVSAGLKSGGSQGSGFGVSDASSSLADD
FDDDDGDGDSRLAISVGKGSKRHEERKGGSKKSHPRGGHGGVLEGEGGEG
AGKASVDSQKLRNREHARNTRLRKKAYIETLRHQLQSLSDAKDKEDKTEL
VSHVRSLEGRKLKKARLQTFLLYRARGELDRRKWAVLLAEDFVLKLPLTP
YRYFPAGDVEQHARYVRGIDATIRDTASFTVLIDSLSRTYRERVRVQFYS
EADYIVIGTGPTLMCRWTMRSENAVACGCQTELELCGMLQAEFEPREVKL
KRLNVMFDVMGLMQQLRRMGGGALFQTAPSTLQMAEDPTEEPRIVFALQV
PFRIRSINEAWMMHYGVTVEDCQNRCVVLERNPLCPVPGAGGGREGRGAG
EAEAPVDSAWQFIQFAYECIAKQLSHSLIVLYETKTQGPIGARLRLFPVY
TGGYVTHYMGGLTSLHDPSFPNDYPTVLAFR

mRNA from alignment at KK037248.1:514680..517757+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8373 ID=rna8373|Name=rna8373|organism=Nannochloropsis gaditana|type=mRNA|length=3078bp|location=Sequence derived from alignment at KK037248.1:514680..517757+ (Nannochloropsis gaditana)
CGAGAGCGATACGAGAGAGCTTACCACCTCAACTCGCATGTCTCTTCTAC
GCCGACGGCAGCCATGTCCCTGCGACTTGCACGCCCCATCGCCACGCCTC
ACGCCAACTTTTTCCTTGTCACAGCGCGACGCTTCCGGGCGAGACACACT
TTGGTAAATGTACGGCGTCGATTGAACGGCCGCATTGGGGCTCGTCTTCG
GTCGCGTGAGCTCAGCCAGCAAGCCACCTGATTTCCTTCTTGAATTACCG
TGTTCTTGTTCCAGCACCCGTCAGGAACGGGGGATATTCACCCTCACAAA
CTTTACTTGGAAAAAAACCATCTCCCCCACGAGTGCCATTGCGTGATCTT
GTGATTATTTGTCGTCTCTGTCTTTCAGGGAAGAGGAGTTTCATGAGTGC
ACGAGGCATGAAGGGTCAGGGGGTGGACGGTAGCCGCGGGGGCGGAATAA
ACGACCTCGGAAGTCGGGCGGAGCGACAAAATTCGAGTGTCGGGAATGAT
TATAGAAAGAGCAGCAATGGAAATGACGgtagggatgggaggagcgCCCA
TCTCGGCCGAGACAAGAAGTCACGAAATTCTGCCTCGGGAGCCCTGACGA
GGCCTGCGTCCAACACGGGCAATGGGGGCCAGATGGAAGCCCCAGCATTC
CAACAAGCAGACGACGAATTGACGGAGACATTGTTCAATCAATTCGACAA
CTACGCAGACTACCTTCCTATGGACGACGTGGTTGCCATGATGTCGGGAT
GGCaagaggcagggggcgaaggaagggggggaaacgggGGCGAGCGGTCT
CTGAGTGACGACGGACAGATGCACTTACAGACCCCGCTCGATGATGAGGT
ACCCTTGCCCGCCGCTGTACAAGGCATGCTATCGCACAGTGGGGCCTCGG
AAGAAGGAGTGGTGAGTGCGGGGTTGAAAAGCGGGGGCAGCCAAGGGAGC
GGGTTTGGAGTCTCGGATGCCAGCAGCAGCTTAGCCGACGACTTCGATGA
CGACGATGGAGACGGTGATTCCCGCTTAGCCATCTcagtgggaaaaggaa
gcaagcgCCAtgaggagagaaaaggaggaagcaagaagTCACATCCGAGG
GGGGGACATGGTGGGgtcctggagggggaggggggagagggcgctgGGAA
GGCGAGCGTGGATTCCCAGAAGCTGCGGAACCGCGAACATGCCCGGAACA
CGCGACTCCGGAAGAAAGCCTACATTGAGACGCTACGCCATCAACTGCAG
TCTCTGAGCGAtgccaaggacaaggaggacaagacgGAGCTTGTCTCCCA
TGTCCGGAGCCTGGAGGGCCGCAAattgaaaaaggcgcggCTGCAGACCT
TTTTGCTCTACCGAGCACGGGGCGAACTGGACCGGAGAAAATGGGCGGTC
CTCCTCGCAGAAGATTTCGTCTTGAAGTTGCCCTTGACGCCCTACCGTTA
CTTCCCCGCGGGCGACGTGGAACAGCACGCACGCTACGTCCGAGGGATCG
ACGCGACCATCCGAGACACGGCCTCTTTCACCGTCCTCATCGACTCGCTG
TCCCGGACCTACCGGGAGCGTGTCCGTGTCCAATTTTATTCGGAGGCGGA
CTACATCGTCATCGGCACCGGGCCCACACTCATGTGTCGGTGGACGATGC
GGAGTGAGAACGCGGTCGCCTGCGGGTGCCAGACGGAATTGGAGCTCTGC
GGCATGCTTCAGGCCGAGTTTGAACCCAGAGAGGTGAAGCTGAAGAGGCT
GAACGTGATGTTTGACGTGATGGGCTTGATGCAGCAGCTCCGACgaatgg
ggggaggagccctCTTTCAAACCGCGCCGTCCACGTTGCAGATGGCCGAA
GACCCCACGGAGGAGCCCCGGATCGTCTTTGCCCTCCAGGTCCCTTTCCG
AATCCGGAGTATCAACGAGGCCTGGATGATGCACTACGGCGTCACGGTGG
AAGATTGCCAGAACCGATGCGTGGTCTTGGAACGGAACCCGTTGTGCCCC
GTCCcaggcgcggggggagggcgggaaggaagaggtgcaggggaggcgga
ggcgccgGTGGATTCGGCCTGGCAATTCATCCAATTTGCCTACGAATGCA
TCGCCAAGCAGTTGTCCCACTCTTTGATCGTCCTGTACGAGACCAAAACT
CAGGGTCCGATCGGGGCCCGTCTCCGGCTCTTCCCCGTCTACACGGGGGG
GTACGTGACTCACTACATGGGGGGGCTCACATCCCTGCACGACCCCAGTT
TTCCCAACGACTACCCCACGGTGCTGGCATTCagatgacggggagggagg
gagggagggagggcggcgcggTTGTATCTTAAGTGGGAGAAGGACTTCAT
CCAGACGGGGATGTATTCGGCGTACACGACCCAAAAAGCCCGGGGCAAGA
ATAGAGTCGTCTGAGATATTTTACATGTTGTACATCTGAAGAAATTATGC
CCGAGAAGGCGCAATGCTCATGAAGAAGTCTTgccgtggaaggaggaaac
atAACCTAGGACCAGGGGGAGCACCCAGCAGCTCTTACAGTGAAGGAGCT
CACTCGTCAAGCACACTCATGCTCGACGCATGCTGTCCTCCGTGTCCGCT
GCTCGCCTCTACTTCCCGCCCCTGCTCCGTCGAGACCCCTTTATCTTGTC
GCGCGTGGCGAGGACAGGCGGAAATCCTGGGCTAAGAGCCCCGGGAGGTG
GACTCGGAGAGGGCGCGAGACGAGCCCGGCAGGGCGGTACTGGGGTGGAA
AAACGGTCAAGCGATTCAACATGACGTGCGTGCACCTCGGAAGAGGCGTC
GGTCGAGTCAAGTTGAGTCGctgcgacgagggagggggaagggaatcGGA
GGGCTGAAAGAAGCGACAGGAGGCCTGTTGTTGACAGAAGGGGGGTAGTG
CGATTTGGTTAAGGAAAAACTAGCATAGAGAAATGCAAGGTAGATCACGG
GAATGATACTGCCATCGGAAGCTTTGCCGCGTTTCAACGTTTTTCAACGG
TCCAAACAGTGAACAAGAATAAAGTCATTAAACAAATATGGTAAGCAAAT
TCAATGCGGACACCTCCACGCAATTTTG

Coding sequence (CDS) from alignment at KK037248.1:514680..517757+

>rna8373 ID=rna8373|Name=rna8373|organism=Nannochloropsis gaditana|type=CDS|length=1896bp|location=Sequence derived from alignment at KK037248.1:514680..517757+ (Nannochloropsis gaditana)
ATGAGTGCACGAGGCATGAAGGGTCAGGGGGTGGACGGTAGCCGCGGGGG
CGGAATAAACGACCTCGGAAGTCGGGCGGAGCGACAAAATTCGAGTGTCG
GGAATGATTATAGAAAGAGCAGCAATGGAAATGACGgtagggatgggagg
agcgCCCATCTCGGCCGAGACAAGAAGTCACGAAATTCTGCCTCGGGAGC
CCTGACGAGGCCTGCGTCCAACACGGGCAATGGGGGCCAGATGGAAGCCC
CAGCATTCCAACAAGCAGACGACGAATTGACGGAGACATTGTTCAATCAA
TTCGACAACTACGCAGACTACCTTCCTATGGACGACGTGGTTGCCATGAT
GTCGGGATGGCaagaggcagggggcgaaggaagggggggaaacgggGGCG
AGCGGTCTCTGAGTGACGACGGACAGATGCACTTACAGACCCCGCTCGAT
GATGAGGTACCCTTGCCCGCCGCTGTACAAGGCATGCTATCGCACAGTGG
GGCCTCGGAAGAAGGAGTGGTGAGTGCGGGGTTGAAAAGCGGGGGCAGCC
AAGGGAGCGGGTTTGGAGTCTCGGATGCCAGCAGCAGCTTAGCCGACGAC
TTCGATGACGACGATGGAGACGGTGATTCCCGCTTAGCCATCTcagtggg
aaaaggaagcaagcgCCAtgaggagagaaaaggaggaagcaagaagTCAC
ATCCGAGGGGGGGACATGGTGGGgtcctggagggggaggggggagagggc
gctgGGAAGGCGAGCGTGGATTCCCAGAAGCTGCGGAACCGCGAACATGC
CCGGAACACGCGACTCCGGAAGAAAGCCTACATTGAGACGCTACGCCATC
AACTGCAGTCTCTGAGCGAtgccaaggacaaggaggacaagacgGAGCTT
GTCTCCCATGTCCGGAGCCTGGAGGGCCGCAAattgaaaaaggcgcggCT
GCAGACCTTTTTGCTCTACCGAGCACGGGGCGAACTGGACCGGAGAAAAT
GGGCGGTCCTCCTCGCAGAAGATTTCGTCTTGAAGTTGCCCTTGACGCCC
TACCGTTACTTCCCCGCGGGCGACGTGGAACAGCACGCACGCTACGTCCG
AGGGATCGACGCGACCATCCGAGACACGGCCTCTTTCACCGTCCTCATCG
ACTCGCTGTCCCGGACCTACCGGGAGCGTGTCCGTGTCCAATTTTATTCG
GAGGCGGACTACATCGTCATCGGCACCGGGCCCACACTCATGTGTCGGTG
GACGATGCGGAGTGAGAACGCGGTCGCCTGCGGGTGCCAGACGGAATTGG
AGCTCTGCGGCATGCTTCAGGCCGAGTTTGAACCCAGAGAGGTGAAGCTG
AAGAGGCTGAACGTGATGTTTGACGTGATGGGCTTGATGCAGCAGCTCCG
ACgaatggggggaggagccctCTTTCAAACCGCGCCGTCCACGTTGCAGA
TGGCCGAAGACCCCACGGAGGAGCCCCGGATCGTCTTTGCCCTCCAGGTC
CCTTTCCGAATCCGGAGTATCAACGAGGCCTGGATGATGCACTACGGCGT
CACGGTGGAAGATTGCCAGAACCGATGCGTGGTCTTGGAACGGAACCCGT
TGTGCCCCGTCCcaggcgcggggggagggcgggaaggaagaggtgcaggg
gaggcggaggcgccgGTGGATTCGGCCTGGCAATTCATCCAATTTGCCTA
CGAATGCATCGCCAAGCAGTTGTCCCACTCTTTGATCGTCCTGTACGAGA
CCAAAACTCAGGGTCCGATCGGGGCCCGTCTCCGGCTCTTCCCCGTCTAC
ACGGGGGGGTACGTGACTCACTACATGGGGGGGCTCACATCCCTGCACGA
CCCCAGTTTTCCCAACGACTACCCCACGGTGCTGGCATTCagatga

Synonyms

Publications