EWM22412.1, cds8262 (CDS) Nannochloropsis gaditana

Overview
NameEWM22412.1
Unique Namecds8262
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:280853..280998 -
Alignment locationKK037248.1:278781..280656 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22412.1
Productseryl-trna synthetase
Orig transcript idgnl|cribi|Naga_100067g2.2700.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:280853..280998 -
KK037248.1supercontigKK037248.1:278781..280656 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
GO:0006418tRNA aminoacylation for protein translation
GO:0006434seryl-tRNA aminoacylation
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004812aminoacyl-tRNA ligase activity
GO:0000166nucleotide binding
GO:0004828serine-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR006195aa-tRNA-synth_II
IPR009068S15_NS1_RNA-bd
IPR002314aa-tRNA-synt_IIb_cons-dom
IPR010987Glutathione-S-Trfase_C-like
IPR000738WHEP-TRS
IPR002317Ser-tRNA-ligase_type_1
Homology
BLAST of EWM22412.1 vs. NCBI_GenBank
Match: gi|585102916|gb|EWM22412.1| (seryl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 1395.18 bits (3610), Expect = 0.000e+0
Identity = 673/673 (100.00%), Postives = 673/673 (100.00%), Query Frame = 0
Query:    1 MKAKEECRDLVTKIQEFDKQVLEMDRAVKAAKEEVDKLLPKIGNIVDDSVPVSQDEEADTEVVRTWGTPVTGDDLLHHHDLLWRIGGFEPERGSAVAGHRGYFLRDAGLLLNMALVNYGVSFLRARKYSVLQPPYFMNRDVMAGVAQLEQFDEELYKVTGDDEKYLIATSEQPLCGFHKGEWLEEKTLPLRYGGVSTCFRKEAGAHGKDCWGIFRVHQFDKVEQFVVCEGDLEASQKMQEEMIIAAEDFYQSLGIAYRVVNIVSGELNNAAIKKFDLEGWFPGYDAYRELVSCSNCTDYQSRSMEIRCGTKKVGQEGKKYVHMLNSTLCACTRTICAILENFQVKDGIRVPEVLVPFMGGLTFLPFVREGRKDAATAKAADKKPKKTAAPKGMAPAVGKAQNGTGTPSETEELANAIAAKGEEIRQLKLKKADKATVQPHVETLLSLKRDYKAATGEEYAAPSAGQAQNPKPAVRALNPPPLPSTGNAGEGAGVEEAITAKGEEIRALKARKADKETLGPHIAELLNLKAKYKALTGADFVAPSAGSTSVHDKKVAASQTSPKVVSTSIPSTKNKTGTNKAEHVAGRNSGAIEDVQGPILDATGKPILANLNTYLQTRSYIRGFVPSQEDNVVAVAVISMEKDGVDKVRYPHLSRWLRHVGAVSSAERMAWQA 673
            MKAKEECRDLVTKIQEFDKQVLEMDRAVKAAKEEVDKLLPKIGNIVDDSVPVSQDEEADTEVVRTWGTPVTGDDLLHHHDLLWRIGGFEPERGSAVAGHRGYFLRDAGLLLNMALVNYGVSFLRARKYSVLQPPYFMNRDVMAGVAQLEQFDEELYKVTGDDEKYLIATSEQPLCGFHKGEWLEEKTLPLRYGGVSTCFRKEAGAHGKDCWGIFRVHQFDKVEQFVVCEGDLEASQKMQEEMIIAAEDFYQSLGIAYRVVNIVSGELNNAAIKKFDLEGWFPGYDAYRELVSCSNCTDYQSRSMEIRCGTKKVGQEGKKYVHMLNSTLCACTRTICAILENFQVKDGIRVPEVLVPFMGGLTFLPFVREGRKDAATAKAADKKPKKTAAPKGMAPAVGKAQNGTGTPSETEELANAIAAKGEEIRQLKLKKADKATVQPHVETLLSLKRDYKAATGEEYAAPSAGQAQNPKPAVRALNPPPLPSTGNAGEGAGVEEAITAKGEEIRALKARKADKETLGPHIAELLNLKAKYKALTGADFVAPSAGSTSVHDKKVAASQTSPKVVSTSIPSTKNKTGTNKAEHVAGRNSGAIEDVQGPILDATGKPILANLNTYLQTRSYIRGFVPSQEDNVVAVAVISMEKDGVDKVRYPHLSRWLRHVGAVSSAERMAWQA
Sbjct:    1 MKAKEECRDLVTKIQEFDKQVLEMDRAVKAAKEEVDKLLPKIGNIVDDSVPVSQDEEADTEVVRTWGTPVTGDDLLHHHDLLWRIGGFEPERGSAVAGHRGYFLRDAGLLLNMALVNYGVSFLRARKYSVLQPPYFMNRDVMAGVAQLEQFDEELYKVTGDDEKYLIATSEQPLCGFHKGEWLEEKTLPLRYGGVSTCFRKEAGAHGKDCWGIFRVHQFDKVEQFVVCEGDLEASQKMQEEMIIAAEDFYQSLGIAYRVVNIVSGELNNAAIKKFDLEGWFPGYDAYRELVSCSNCTDYQSRSMEIRCGTKKVGQEGKKYVHMLNSTLCACTRTICAILENFQVKDGIRVPEVLVPFMGGLTFLPFVREGRKDAATAKAADKKPKKTAAPKGMAPAVGKAQNGTGTPSETEELANAIAAKGEEIRQLKLKKADKATVQPHVETLLSLKRDYKAATGEEYAAPSAGQAQNPKPAVRALNPPPLPSTGNAGEGAGVEEAITAKGEEIRALKARKADKETLGPHIAELLNLKAKYKALTGADFVAPSAGSTSVHDKKVAASQTSPKVVSTSIPSTKNKTGTNKAEHVAGRNSGAIEDVQGPILDATGKPILANLNTYLQTRSYIRGFVPSQEDNVVAVAVISMEKDGVDKVRYPHLSRWLRHVGAVSSAERMAWQA 673          
BLAST of EWM22412.1 vs. NCBI_GenBank
Match: gi|298709359|emb|CBJ31293.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 646.351 bits (1666), Expect = 0.000e+0
Identity = 335/562 (59.61%), Postives = 398/562 (70.82%), Query Frame = 0
Query:   13 KIQEFDKQVLEMDRAVKAAKEEVDKLLPKIGNIVDDSVPVSQDEEADTEVVRTWGTPVTGDDLLHHHDLLWRIGGFEPERGSAVAGHRGYFLRDAGLLLNMALVNYGVSFLRARKYSVLQPPYFMNRDVMAGVAQLEQFDEELYKVTGD--DEKYLIATSEQPLCGFHKGEWLEEKTLPLRYGGVSTCFRKEAGAHGKDCWGIFRVHQFDKVEQFVVCEGDLEASQKMQEEMIIAAEDFYQSLGIAYRVVNIVSGELNNAAIKKFDLEGWFPGYDAYRELVSCSNCTDYQSRSMEIRCGTKKVGQEGKKYVHMLNSTLCACTRTICAILENFQVKDGIRVPEVLVPFMGGLTFLPFVREGRKDAATAKAADKKPKKTAAPK--------------------GMA-------PAVGKAQNGTGTPSETEELANAIAAKGEEIRQLKLKKADKATVQPHVETLLSLKRDYKAATGEEYAAPSAGQAQNPKPAVRALNPPPLPSTGNAGEGAGVEEAITAKGEEIRALKARKADKETLGPHIAELLNLKAKYKALTGADFVAPSA 545
            KI+E  K+V  ++  +    ++V KLLPKIGNIV D VPVS DEE D +VV T+G   TG+  +HHH++L RIGG+EPERG  VAGHR YFLRDAGLLLN AL+NYG++FLR R YSVLQPPYFM++DVMAGVAQLEQFDEELYKV+G   +EKYLIATSEQP+C FHKGEWL E  LPLRYGGVSTCFRKEAGAHGKD WGIFRVHQF+KVEQF +CEGDLE S  MQ EM  A+E+FYQSLGI+YRVVNIVSGELNNAAIKK+DLE WFP Y+ +RELVSCSNCTDYQSR ME+R G KK+GQ  KK+VHMLNSTLCA TRT+  ILEN+Q   G+ VPEVLVPFMGG+TFL +V+E  K    AK A K    T+A K                    G A       P + +A+ G    SE + +A+ I AKG EIR LK  K DKAT++PH++TLL+LK +YK  TG++YA P A       PA  +       +   +   A +   I AKG+EIR LK  K DK T+ PHI  L+ LK +YK  TG  +VAP A
Sbjct:   76 KIKEVAKEVKIVEAKMVELSQQVSKLLPKIGNIVADDVPVSNDEEKDNKVVSTFGPTPTGEKYMHHHEVLHRIGGYEPERGVGVAGHRAYFLRDAGLLLNQALINYGIAFLRKRNYSVLQPPYFMSKDVMAGVAQLEQFDEELYKVSGSGTEEKYLIATSEQPICAFHKGEWLGESELPLRYGGVSTCFRKEAGAHGKDTWGIFRVHQFEKVEQFCICEGDLEKSAAMQVEMSKASEEFYQSLGISYRVVNIVSGELNNAAIKKYDLEAWFPAYEEFRELVSCSNCTDYQSRGMEVRSGHKKMGQVEKKFVHMLNSTLCATTRTMSCILENYQTPTGVTVPEVLVPFMGGITFLDYVKELPKGKREAKGATKGGYATSAKKPPAPPAPAPAPAPAPAAANGGAAESSARGLPGLEEAKGG----SEADAIADKITAKGLEIRDLKKSKPDKATLKPHIDTLLALKTEYKEKTGKDYAPPPAAAGAAAPPAAASKAAEAGAAEKESPAAAAITAKIVAKGDEIRELKKSKPDKATIQPHIDALIALKTQYKDETGKAYVAPGA 633          
BLAST of EWM22412.1 vs. NCBI_GenBank
Match: gi|673051249|ref|XP_008879585.1| (serine-tRNA ligase [Aphanomyces invadans] >gi|574464614|gb|ETV91659.1| serine-tRNA ligase [Aphanomyces invadans])

HSP 1 Score: 524.628 bits (1350), Expect = 1.955e-178
Identity = 253/389 (65.04%), Postives = 301/389 (77.38%), Query Frame = 0
Query:    2 KAKEECRDLVTKIQEFDKQVLEMDRAVKAAKEEVDKLLPKIGNIVDDSVPVSQDEEADTEVVRTWGTPVTGDDLLH-HHDLLWRIGGFEPERGSAVAGHRGYFLRDAGLLLNMALVNYGVSFLRARKYSVLQPPYFMNRDVMAGVAQLEQFDEELYKVTG---DDEKYLIATSEQPLCGFHKGEWLEEKTLPLRYGGVSTCFRKEAGAHGKDCWGIFRVHQFDKVEQFVVCEGDLEASQKMQEEMIIAAEDFYQSLGIAYRVVNIVSGELNNAAIKKFDLEGWFPGYDAYRELVSCSNCTDYQSRSMEIRCGTKKVGQEGKKYVHMLNSTLCACTRTICAILENFQVKDGIRVPEVLVPFMGGLTFLPFVREGRKDA---ATAKAADKK 383
            K K+E ++LV + ++ ++    +     A KE VD+ L KIGNIVD SVP+SQ+E+ D  V  TWGT    DD LH HH++L RI G+EPE+G  VAGHRGYFL+  G++LN AL+ YG  FL  RKY++LQPP+FMN+DVMAGVAQL +FDE LYKVTG   +DEKYLIATSEQP+CGFHKGEW+ E  LP+RY G STCFRKEAG+HGKD WGIFRVHQF+KVEQFV+CE   E S  M +E++  AE FYQSLG+ YRV+NIVSGELNNAAIKKFDLE WFP Y  +RELVSCSNCTDYQSR+MEIRCG KK+ Q  KKYVH+LN+TLCA TRTI  ILENFQ  +G+RVPEVLVPFMGG+TFLPFV E + +       KAA KK
Sbjct:   71 KKKDEAQELVEQRKKLEESEPALKLEADALKEVVDRELYKIGNIVDSSVPISQNED-DNVVTGTWGTCRPHDDSLHYHHEVLHRIDGYEPEKGVQVAGHRGYFLKGYGVMLNQALIMYGQQFLMKRKYTLLQPPFFMNKDVMAGVAQLSEFDEALYKVTGADANDEKYLIATSEQPMCGFHKGEWITESALPIRYAGTSTCFRKEAGSHGKDTWGIFRVHQFEKVEQFVLCEP--EQSPAMLDELLATAEAFYQSLGLPYRVINIVSGELNNAAIKKFDLEAWFPAYSEFRELVSCSNCTDYQSRAMEIRCGIKKMNQTEKKYVHLLNATLCATTRTISCILENFQTPEGVRVPEVLVPFMGGVTFLPFVNEPKANTNALKMEKAASKK 456          
BLAST of EWM22412.1 vs. NCBI_GenBank
Match: gi|698814300|ref|XP_009840179.1| (serine-tRNA ligase [Aphanomyces astaci] >gi|574104940|gb|ETV70467.1| serine-tRNA ligase [Aphanomyces astaci])

HSP 1 Score: 524.242 bits (1349), Expect = 2.680e-178
Identity = 254/389 (65.30%), Postives = 300/389 (77.12%), Query Frame = 0
Query:    2 KAKEECRDLVTKIQEFDKQVLEMDRAVKAAKEEVDKLLPKIGNIVDDSVPVSQDEEADTEVVRTWGTPVTGDDLLH-HHDLLWRIGGFEPERGSAVAGHRGYFLRDAGLLLNMALVNYGVSFLRARKYSVLQPPYFMNRDVMAGVAQLEQFDEELYKVTG---DDEKYLIATSEQPLCGFHKGEWLEEKTLPLRYGGVSTCFRKEAGAHGKDCWGIFRVHQFDKVEQFVVCEGDLEASQKMQEEMIIAAEDFYQSLGIAYRVVNIVSGELNNAAIKKFDLEGWFPGYDAYRELVSCSNCTDYQSRSMEIRCGTKKVGQEGKKYVHMLNSTLCACTRTICAILENFQVKDGIRVPEVLVPFMGGLTFLPFVREGRKDA---ATAKAADKK 383
            K K+E ++LV + +  ++    +     A KE VD+ L KIGN+VD SVP+SQ+E+ D EV  TWGT    DD LH HH++L RI G+EPE+G  VAGHRGYFL+  G++LN AL+ YG  FL  RKY++LQPPYFMN+DVMAGVAQL +FDE LYKVTG   +DEKYLIATSEQP+CGFHKGEW+ E  LP+RY G STCFRKEAG+HGKD WGIFRVHQF+KVEQFV+CE   E S  M +EM+  AE FYQSLG+ YRV+NIVSGELNNAAIKKFDLE WFP Y  +RELVS SNCTDYQSR+MEIRCG KK+ Q  KKYVH+LN+TLCA TRTI  ILENFQ  +G+RVPEVLVPFMGG+TFLPFV E + +       KAA KK
Sbjct:   71 KKKDEAQELVDQRKRLEESEPALKLEADALKEVVDRELYKIGNLVDPSVPISQNED-DNEVTATWGTCRAHDDSLHYHHEVLHRIDGYEPEKGVQVAGHRGYFLKGYGVMLNQALIMYGQQFLMKRKYTLLQPPYFMNKDVMAGVAQLSEFDEALYKVTGADANDEKYLIATSEQPMCGFHKGEWITESALPIRYAGSSTCFRKEAGSHGKDTWGIFRVHQFEKVEQFVLCEP--EHSPAMLDEMLATAEAFYQSLGLPYRVINIVSGELNNAAIKKFDLEAWFPAYAEFRELVSASNCTDYQSRAMEIRCGIKKMNQTEKKYVHLLNATLCATTRTISCILENFQTPEGVRVPEVLVPFMGGVTFLPFVNEPKANTNALKMEKAASKK 456          
BLAST of EWM22412.1 vs. NCBI_GenBank
Match: gi|325190580|emb|CCA25077.1| (unnamed protein product [Albugo laibachii Nc14])

HSP 1 Score: 520.39 bits (1339), Expect = 6.504e-177
Identity = 235/372 (63.17%), Postives = 298/372 (80.11%), Query Frame = 0
Query:    2 KAKEECRDLVTKIQEFDKQVLEMDRAVKAAKEEVDKLLPKIGNIVDDSVPVSQDEEADTEVVRTWGTPVTGDDLLHHHDLLWRIGGFEPERGSAVAGHRGYFLRDAGLLLNMALVNYGVSFLRARKYSVLQPPYFMNRDVMAGVAQLEQFDEELYKVTGDDEKYLIATSEQPLCGFHKGEWLEEKTLPLRYGGVSTCFRKEAGAHGKDCWGIFRVHQFDKVEQFVVCEGDLEASQKMQEEMIIAAEDFYQSLGIAYRVVNIVSGELNNAAIKKFDLEGWFPGYDAYRELVSCSNCTDYQSRSMEIRCGTKKVGQEGKKYVHMLNSTLCACTRTICAILENFQVKDGIRVPEVLVPFMGGLTFLPFVREGRKD 373
            KAK++ +D+  + +    Q+  + +   A +E+VD+ L  I N VD SVP+SQ+E+ D ++V+ WG   + ++LL HH++L RI G+EPERG  VAGHR YFL   GLLL  AL+ Y  +FL  R+Y +++PP+F+N+D+MAGVAQL+ FDE+LYKV GDDEKYLIATSEQPLCG+HKG+W++E +LPLRYGG+STCFRKE+G+HGKD WGIFRVHQFDKVEQF + E   E S +M EEM+  AEDFYQSL ++YRVVNIVSGELNNAA+KK+DLE WFP Y+ YRELVSCSNCTDYQ+R+MEIRCG KK  Q  KKYVHMLNSTLCA TRT+C ILEN Q ++G++VP VLVPFMGG+TF+PFVRE +K+
Sbjct:   69 KAKKDFKDISEERKNLAAQIPGLKKDADALREQVDRKLATIANTVDPSVPISQNED-DNQIVKEWGKVSSKEELLFHHEVLHRIDGYEPERGVQVAGHRAYFLTGYGLLLEQALLQYASAFLMQRQYKMIKPPFFINKDIMAGVAQLDDFDEQLYKVEGDDEKYLIATSEQPLCGYHKGDWIQESSLPLRYGGLSTCFRKESGSHGKDTWGIFRVHQFDKVEQFCITEP--ENSTEMHEEMLKHAEDFYQSLNLSYRVVNIVSGELNNAAVKKYDLEAWFPAYNEYRELVSCSNCTDYQARAMEIRCGIKKENQREKKYVHMLNSTLCASTRTVCCILENNQDENGVKVPHVLVPFMGGVTFIPFVRETKKN 437          
BLAST of EWM22412.1 vs. NCBI_GenBank
Match: gi|635372410|emb|CCI39631.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 518.85 bits (1335), Expect = 3.181e-176
Identity = 234/372 (62.90%), Postives = 296/372 (79.57%), Query Frame = 0
Query:    2 KAKEECRDLVTKIQEFDKQVLEMDRAVKAAKEEVDKLLPKIGNIVDDSVPVSQDEEADTEVVRTWGTPVTGDDLLHHHDLLWRIGGFEPERGSAVAGHRGYFLRDAGLLLNMALVNYGVSFLRARKYSVLQPPYFMNRDVMAGVAQLEQFDEELYKVTGDDEKYLIATSEQPLCGFHKGEWLEEKTLPLRYGGVSTCFRKEAGAHGKDCWGIFRVHQFDKVEQFVVCEGDLEASQKMQEEMIIAAEDFYQSLGIAYRVVNIVSGELNNAAIKKFDLEGWFPGYDAYRELVSCSNCTDYQSRSMEIRCGTKKVGQEGKKYVHMLNSTLCACTRTICAILENFQVKDGIRVPEVLVPFMGGLTFLPFVREGRKD 373
            KAK + +D+  + +    Q+  + +   A KE+VD+ L  I N VD SVP+SQ+E+ D +++RTWG   + + LL HH++L RI G+EPERG  VAGHR YFL   GLLL  AL+ Y  +FL  R+Y +++PP+F+N+D+MAGVAQL+ FDE+LYKV G+DEKYLIATSEQPLCG+HKG+W++E +LPLRYGG+STCFRKE+G+HGKD WGIFRVHQFDKVEQF + E   E S +M EEM+  AEDFYQSL ++YRVVNIVSGELNNAA+KK+DLE WFP Y  YRELVSCSNCTDYQ+R+MEIRCG KK  Q  KKYVHMLNSTLCA TRT+C ILEN Q ++G++VP VL+PFMGG+T++PFVRE +K+
Sbjct:   69 KAKMDFKDISEERKHLAAQIPGLKKEADALKEQVDRKLATIANTVDPSVPISQNED-DNQIIRTWGQRTSKEGLLFHHEVLHRIDGYEPERGVQVAGHRAYFLTGYGLLLEQALLQYATAFLMQRQYKMIKPPFFINKDIMAGVAQLDDFDEQLYKVEGEDEKYLIATSEQPLCGYHKGDWIQESSLPLRYGGLSTCFRKESGSHGKDTWGIFRVHQFDKVEQFCITEP--ENSTEMHEEMLKHAEDFYQSLNLSYRVVNIVSGELNNAAVKKYDLEAWFPAYKEYRELVSCSNCTDYQARAMEIRCGIKKENQREKKYVHMLNSTLCASTRTVCCILENNQDENGVKVPHVLIPFMGGVTYMPFVREIKKN 437          
BLAST of EWM22412.1 vs. NCBI_GenBank
Match: gi|301117600|ref|XP_002906528.1| (seryl-tRNA synthetase [Phytophthora infestans T30-4] >gi|262107877|gb|EEY65929.1| seryl-tRNA synthetase [Phytophthora infestans T30-4])

HSP 1 Score: 514.227 bits (1323), Expect = 1.756e-174
Identity = 245/388 (63.14%), Postives = 294/388 (75.77%), Query Frame = 0
Query:    2 KAKEECRDLVTKIQEFDKQVLEMDRAVKAAKEEVDKLLPKIGNIVDDSVPVSQDEEADTEVVRTWGTPVTGDDLLHHHDLLWRIGGFEPERGSAVAGHRGYFLRDAGLLLNMALVNYGVSFLRARKYSVLQPPYFMNRDVMAGVAQLEQFDEELYKVTGDDEKYLIATSEQPLCGFHKGEWLEEKTLPLRYGGVSTCFRKEAGAHGKDCWGIFRVHQFDKVEQFVVCEGDLEASQKMQEEMIIAAEDFYQSLGIAYRVVNIVSGELNNAAIKKFDLEGWFPGYDAYRELVSCSNCTDYQSRSMEIRCGTKKVGQEGKKYVHMLNSTLCACTRTICAILENFQVKDGIRVPEVLVPFMGGLTFLPFVREGRKD---AATAKAADKKPKK 386
            KAKE+ + L  + +E    + E  +   A KE VDK LPKIGN VD +VP+S +E+ D  VV+TWG+P+  D L  HH++L RI G+EPERG  VAGHR YFL   G LL  AL+ Y  +FL   +Y +L+PP+FMN++ MA VAQL+ FDE+LYKV G+DEKYLIATSEQP+CG+HKGEW+ E +LPLRYGG STCFRKEAG+HGKD WGIFRVHQFDK+EQF  C  D E+S  M EEM+  AE+FYQSL + YRVVNIVSGELNNAA+KK+DLE WFP Y  YRELVS SNCTD+QSR+MEIRCG KK  Q  KKYVHMLNSTLCA TRT+C ILENFQ ++G++VPEVLVPFMGG T+LPF RE + +       KAA KK  K
Sbjct:   69 KAKEDFKALSDERKELAASLPEKKKEADALKELVDKELPKIGNTVDPTVPISNNED-DNVVVKTWGSPIQKDGLHFHHEVLHRIDGYEPERGVQVAGHRAYFLTGYGFLLEQALMAYATAFLMKAQYKMLKPPFFMNKEGMAAVAQLDDFDEQLYKVIGEDEKYLIATSEQPICGYHKGEWITESSLPLRYGGFSTCFRKEAGSHGKDTWGIFRVHQFDKMEQF--CITDPESSAAMHEEMLRHAEEFYQSLNLPYRVVNIVSGELNNAAVKKYDLEAWFPAYKEYRELVSASNCTDFQSRAMEIRCGVKKENQREKKYVHMLNSTLCASTRTVCCILENFQDENGVKVPEVLVPFMGGATYLPFTREVKVNLQATKMQKAAKKKGSK 453          
BLAST of EWM22412.1 vs. NCBI_GenBank
Match: gi|970665596|gb|KUG02201.1| (Serine--tRNA ligase [Phytophthora nicotianae])

HSP 1 Score: 512.301 bits (1318), Expect = 9.780e-174
Identity = 240/368 (65.22%), Postives = 286/368 (77.72%), Query Frame = 0
Query:    2 KAKEECRDLVTKIQEFDKQVLEMDRAVKAAKEEVDKLLPKIGNIVDDSVPVSQDEEADTEVVRTWGTPVTGDDLLHHHDLLWRIGGFEPERGSAVAGHRGYFLRDAGLLLNMALVNYGVSFLRARKYSVLQPPYFMNRDVMAGVAQLEQFDEELYKVTGDDEKYLIATSEQPLCGFHKGEWLEEKTLPLRYGGVSTCFRKEAGAHGKDCWGIFRVHQFDKVEQFVVCEGDLEASQKMQEEMIIAAEDFYQSLGIAYRVVNIVSGELNNAAIKKFDLEGWFPGYDAYRELVSCSNCTDYQSRSMEIRCGTKKVGQEGKKYVHMLNSTLCACTRTICAILENFQVKDGIRVPEVLVPFMGGLTFLPFVRE 369
            KAKE+ + L  + +     + E  +   A KE VDK LPKIGN VD +VP+S +E+ D  VV+TWGTP+  D L  HH++L RI G+EPERG  VAGHR YFL   G LL  AL+ Y  +FL   +Y +L+PP+FMN++ MA VAQL+ FDE+LYKV G+DEKYLIATSEQP+CG+HKGEWL E +LPLRYGG STCFRKEAG+HGKD WGIFRVHQFDK+EQF  C  D E+S  M EEM+  AE+FYQSL + YRVVNIVSGELNNAA+KK+DLE WFP Y  YRELVS SNCTD+QSR+MEIRCG KK  Q  KKYVHMLNSTLCA TRT+C ILENFQ ++G++VPEVLVPFMGG+T+LPF RE
Sbjct:   69 KAKEDFKALSDERKALAASLPEKKKEADALKELVDKELPKIGNTVDPTVPISNNED-DNVVVKTWGTPLQKDGLHFHHEVLHRIDGYEPERGVQVAGHRAYFLTGYGFLLEQALMAYATAFLMKAQYKMLKPPFFMNKEGMAAVAQLDDFDEQLYKVIGEDEKYLIATSEQPICGYHKGEWLTESSLPLRYGGFSTCFRKEAGSHGKDTWGIFRVHQFDKMEQF--CITDPESSAAMHEEMLRHAEEFYQSLNLPYRVVNIVSGELNNAAVKKYDLEAWFPAYKEYRELVSASNCTDFQSRAMEIRCGVKKENQREKKYVHMLNSTLCASTRTVCCILENFQDENGVKVPEVLVPFMGGVTYLPFTRE 433          
BLAST of EWM22412.1 vs. NCBI_GenBank
Match: gi|675201261|ref|XP_008909515.1| (serine-tRNA ligase [Phytophthora parasitica INRA-310] >gi|566017698|gb|ETI40609.1| serine-tRNA ligase [Phytophthora parasitica P1569] >gi|567955074|gb|ETK80707.1| serine-tRNA ligase [Phytophthora parasitica] >gi|567983743|gb|ETL34129.1| serine-tRNA ligase [Phytophthora parasitica] >gi|568013230|gb|ETL87407.1| serine-tRNA ligase [Phytophthora parasitica] >gi|568043337|gb|ETM40630.1| serine-tRNA ligase [Phytophthora parasitica] >gi|568090210|gb|ETN05045.1| serine-tRNA ligase [Phytophthora parasitica INRA-310] >gi|570321358|gb|ETO69306.1| serine-tRNA ligase [Phytophthora parasitica P1976] >gi|570945122|gb|ETP10379.1| serine-tRNA ligase [Phytophthora parasitica CJ01A1])

HSP 1 Score: 511.916 bits (1317), Expect = 1.462e-173
Identity = 240/368 (65.22%), Postives = 286/368 (77.72%), Query Frame = 0
Query:    2 KAKEECRDLVTKIQEFDKQVLEMDRAVKAAKEEVDKLLPKIGNIVDDSVPVSQDEEADTEVVRTWGTPVTGDDLLHHHDLLWRIGGFEPERGSAVAGHRGYFLRDAGLLLNMALVNYGVSFLRARKYSVLQPPYFMNRDVMAGVAQLEQFDEELYKVTGDDEKYLIATSEQPLCGFHKGEWLEEKTLPLRYGGVSTCFRKEAGAHGKDCWGIFRVHQFDKVEQFVVCEGDLEASQKMQEEMIIAAEDFYQSLGIAYRVVNIVSGELNNAAIKKFDLEGWFPGYDAYRELVSCSNCTDYQSRSMEIRCGTKKVGQEGKKYVHMLNSTLCACTRTICAILENFQVKDGIRVPEVLVPFMGGLTFLPFVRE 369
            KAKE+ + L  + +     + E  +   A KE VDK LPKIGN VD +VP+S +E+ D  VV+TWGTP+  D L  HH++L RI G+EPERG  VAGHR YFL   G LL  AL+ Y  +FL   +Y +L+PP+FMN++ MA VAQL+ FDE+LYKV G+DEKYLIATSEQP+CG+HKGEWL E +LPLRYGG STCFRKEAG+HGKD WGIFRVHQFDK+EQF  C  D E+S  M EEM+  AE+FYQSL + YRVVNIVSGELNNAA+KK+DLE WFP Y  YRELVS SNCTD+QSR+MEIRCG KK  Q  KKYVHMLNSTLCA TRT+C ILENFQ ++G++VPEVLVPFMGG+T+LPF RE
Sbjct:   69 KAKEDFKALSDERKALAASLPEKKKEADALKELVDKELPKIGNTVDPTVPISNNED-DNVVVKTWGTPLQKDGLHFHHEVLHRIDGYEPERGVQVAGHRAYFLTGYGFLLEQALMAYATAFLMKAQYKMLKPPFFMNKEGMAAVAQLDDFDEQLYKVIGEDEKYLIATSEQPICGYHKGEWLTESSLPLRYGGFSTCFRKEAGSHGKDTWGIFRVHQFDKMEQF--CITDPESSAAMHEEMLRHAEEFYQSLNLPYRVVNIVSGELNNAAVKKYDLEAWFPAYKEYRELVSASNCTDFQSRAMEIRCGVKKENQREKKYVHMLNSTLCASTRTVCCILENFQDENGVKVPEVLVPFMGGVTYLPFTRE 433          
BLAST of EWM22412.1 vs. NCBI_GenBank
Match: gi|570976784|gb|ETP38531.1| (serine-tRNA ligase [Phytophthora parasitica P10297])

HSP 1 Score: 511.916 bits (1317), Expect = 1.721e-173
Identity = 240/368 (65.22%), Postives = 286/368 (77.72%), Query Frame = 0
Query:    2 KAKEECRDLVTKIQEFDKQVLEMDRAVKAAKEEVDKLLPKIGNIVDDSVPVSQDEEADTEVVRTWGTPVTGDDLLHHHDLLWRIGGFEPERGSAVAGHRGYFLRDAGLLLNMALVNYGVSFLRARKYSVLQPPYFMNRDVMAGVAQLEQFDEELYKVTGDDEKYLIATSEQPLCGFHKGEWLEEKTLPLRYGGVSTCFRKEAGAHGKDCWGIFRVHQFDKVEQFVVCEGDLEASQKMQEEMIIAAEDFYQSLGIAYRVVNIVSGELNNAAIKKFDLEGWFPGYDAYRELVSCSNCTDYQSRSMEIRCGTKKVGQEGKKYVHMLNSTLCACTRTICAILENFQVKDGIRVPEVLVPFMGGLTFLPFVRE 369
            KAKE+ + L  + +     + E  +   A KE VDK LPKIGN VD +VP+S +E+ D  VV+TWGTP+  D L  HH++L RI G+EPERG  VAGHR YFL   G LL  AL+ Y  +FL   +Y +L+PP+FMN++ MA VAQL+ FDE+LYKV G+DEKYLIATSEQP+CG+HKGEWL E +LPLRYGG STCFRKEAG+HGKD WGIFRVHQFDK+EQF  C  D E+S  M EEM+  AE+FYQSL + YRVVNIVSGELNNAA+KK+DLE WFP Y  YRELVS SNCTD+QSR+MEIRCG KK  Q  KKYVHMLNSTLCA TRT+C ILENFQ ++G++VPEVLVPFMGG+T+LPF RE
Sbjct:   69 KAKEDFKALSDERKALAASLPEKKKEADALKEIVDKELPKIGNTVDPTVPISNNED-DNVVVKTWGTPLQKDGLHFHHEVLHRIDGYEPERGVQVAGHRAYFLTGYGFLLEQALMAYATAFLMKAQYKMLKPPFFMNKEGMAAVAQLDDFDEQLYKVIGEDEKYLIATSEQPICGYHKGEWLTESSLPLRYGGFSTCFRKEAGSHGKDTWGIFRVHQFDKMEQF--CITDPESSAAMHEEMLRHAEEFYQSLNLPYRVVNIVSGELNNAAVKKYDLEAWFPAYKEYRELVSASNCTDFQSRAMEIRCGVKKENQREKKYVHMLNSTLCASTRTVCCILENFQDENGVKVPEVLVPFMGGVTYLPFTRE 433          
The following BLAST results are available for this feature:
BLAST of EWM22412.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102916|gb|EWM22412.1|0.000e+0100.00seryl-trna synthetase [Nannochloropsis gaditana][more]
gi|298709359|emb|CBJ31293.1|0.000e+059.61conserved unknown protein [Ectocarpus siliculosus][more]
gi|673051249|ref|XP_008879585.1|1.955e-17865.04serine-tRNA ligase [Aphanomyces invadans] >gi|5744... [more]
gi|698814300|ref|XP_009840179.1|2.680e-17865.30serine-tRNA ligase [Aphanomyces astaci] >gi|574104... [more]
gi|325190580|emb|CCA25077.1|6.504e-17763.17unnamed protein product [Albugo laibachii Nc14][more]
gi|635372410|emb|CCI39631.1|3.181e-17662.90unnamed protein product [Albugo candida][more]
gi|301117600|ref|XP_002906528.1|1.756e-17463.14seryl-tRNA synthetase [Phytophthora infestans T30-... [more]
gi|970665596|gb|KUG02201.1|9.780e-17465.22Serine--tRNA ligase [Phytophthora nicotianae][more]
gi|675201261|ref|XP_008909515.1|1.462e-17365.22serine-tRNA ligase [Phytophthora parasitica INRA-3... [more]
gi|570976784|gb|ETP38531.1|1.721e-17365.22serine-tRNA ligase [Phytophthora parasitica P10297... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8286rna8286Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications