rna8276, rna8276 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8276
Unique Name	rna8276
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	759
Alignment location	KK037248.1:258114..261132 -

Link to JBrowse

Properties


Property Name	Value
Product	lipase containing protein
Orig transcript id	gnl\|cribi\|Naga_100011g88.3433.mrna
Orig protein id	gnl\|cribi\|Naga_100011g88.3433
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:258114..261132 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g88	gene8016	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22433.1	cds8252	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8276	rna8276-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:258114..261132-
coding sequence from alignment at KK037248.1:258114..261132-

mRNA sequence

>rna8276 ID=rna8276|Name=rna8276|organism=Nannochloropsis gaditana|type=mRNA|length=759bp
ATGCTGCAGGCCCTGGTACTGGAGAAGACGAGGCTGGCGGCATCCGCCGT
GAAGGAGGAGGCGGAGGAGCGAGCGCGCGACCTCCTCTCGACGGTGGGCG
CGGAGGGAGTGAGGGAGAAGGCGATGGAAACCTTCCAAGCGGTGGCGGAT
TCTGTGCGAGGCCTGCGGGCCCAGACTGAGGCGGCGCTGCCGGGAAACAA
TGAGGAGCGAGCAGGGCGGGAAGCTGTGCAGGAGCCTGAGCCGTCAGCCT
TGTCTGCCTCGAGCCCCGAGACCAGGGGCTCTCTCGCGGATGCCCCCGCA
GTAACAAGTGAGGAGGGCGAGTCGGAGGCCTTGTACCCGCCGGGAGAGAT
CTTCCACATCCAGCCCTGCCAGAGCCCGGGGCCCGCCGCCCGGGAGGGTT
CCAAGGAGGCAGGCCGTCAGGGAGCCGCCTGCGGGTACGAGCTCCGACGG
GTGAGAGACGTCCGCTTCTTCGACGGGATCGTCCTCTCATCGGACATGTT
TTCGGCCCATCTCTTGTCGAGCACTCGGAATTCGAGGGCGAGGCTCTCCG
AACAGATTCGGGGGGGAGTCGGTACGCTGCGGGCTGTACAGAGATGTGGT
CGACGTTGGAACGAGGGGCGTACGACTAGCATCCCTTCAGTGTCAGGTGT
TCGTGACTTGAGATGCAATGTAAAGGGTATTTCTCGAAGTATTGAGATGC
CGCGAGCTCCGAACAAAATAAAAAGTGAACGTTCTCAACCGTCTTTTCTA
GGTGGCTGA

protein sequence of rna8276

>rna8276-protein ID=rna8276-protein|Name=rna8276|organism=Nannochloropsis gaditana|type=polypeptide|length=694bp
MQSDMEAIATWSREVNSVCDALHSLCDARRHALSSYAPSWRPCTSCLYSK
TYLSSNVLSIVSKRNDQGLKTRINSASRCQMKRLNVLSSIVWRSGLGGVT
CYTATIPHYGATNGAFSFCASSTNNMADGASSQASGGDSEAESREKSRSS
VSHPAFTKVKGSKTTPSSIDIPPDKLSLEKVLADMKEASRAMGGTLRGEE
ALALMALLARETVHRQTNAHRDSTRPQHLSSSLTFPPLSGARRRRRAKQF
LEYAVLCENAYDFSEGKDWLEPPAGFESVSRWDLLSFHKGGVCIPRHVVL
RVDGGEGTRHRRRKTRVLVVVRGTAEVTDAAINIAMVPGGWTHRGKEYQC
HQGIVESAEFLARMARPVVWRALEGLRQEGGDPGSEVEVVLTGHSLGGAT
AAVAALKLQGEFGPRVPVKSVGFSTPASLAIDLASAPATRRVVTTLVQGA
DVIPRCSTRNLQELKRRAQNVLVEEEVESIKQMVREELGRRGDAWGRELT
GLLLSTAEGATQQLPGAWRDMLPPILKAEGRETQGVGGLKAAFGGILARY
LPALAPEGGGGEDKEEGADGGEGNRSRGVNATERSRDDGHTALEGGATLS
TEARRRLEEVLGEYQAVLDAEIAFAKDQLERIKRQTFQYYLPSSLAPPAV
SDGRGKELTHGQEGGKEVMEGVQKEEEEEEEEEEEEEEGRGGGL

mRNA from alignment at KK037248.1:258114..261132-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8276 ID=rna8276|Name=rna8276|organism=Nannochloropsis gaditana|type=mRNA|length=3019bp|location=Sequence derived from alignment at KK037248.1:258114..261132- (Nannochloropsis gaditana)
GGGAGTACGCGCAAAGGGCAATGCCCTGGGAGTGGAGGAAGGCGCGCATC
TCGTCCTGCGGGAGGTAGGGGTGGCACTCGATCTGCACACAGACCGGCTT
GATTCGAGCCACGTCCAGGATCTCTTGCACTTCTTGCTCGTTGAAGTTCG
ACAGCCCTATCGTTTCCACCAGGCCTGCGTCCACCAGCTTCTCCATCTCC
TTCCACACGGCTTTGTTGTCGCCGTTCGGGTCGCTTAAATGCCGGCCCTG
GGCGTCCTTGGGCCACAAATTTTCCTCTCCCTTCACTTTCTGGAACGCGG
TTGGCCAGTGGATCAAGAGCTGTTGGATCTTCGGTAGTTTCAGTTCCCGC
AAAATCCGGTCGCAGGCGGGCCGCACCGCATCGGGGTGGTGGTCCGTGTT
CCACAGCTTGCTTGTAATCCAGACGTCATTCATCTCTTTGATATATCCCT
TCGCTCGCGCCTCATGCAGCCCCTCTCCAACCTCGCATTGGTTCTCGTAC
ACCTGAGCTGCATCTACATGGATGTAACCCAGGCGCAAGGCCTCCACGAC
TGCGTCTTTAACCTTGCCTTTGTCAGATCGCCACGTACCCAATCCCAGGA
CTGAAAAACACACATGAAACGTCGGAAAGATTGATCAGAAAAATTCTATG
GGAGTAATGCCCACCCCGATCCCCCCTCCACTTACTTGGCATGTTGGCGT
GTGGATCACGCGAAGTAATAGAAAGCTGCGTCGCCATGATGTGGGCGTGC
TTGAATACCAGTGATGGTGCCTGTCGTGGCCAGGTCAGAAGCAATACGAG
GAAAAGGGACCCGAAGAGAGGACGAGGAATCATTTTCCTGAATGAGGGTC
AATCGGGAGGTGGAATGAGGAAAAAAAAAGTCCCCGTGTGCACGTGTGCG
TGTGCCGTGCGCGAGACGCCCCATTGTTGTTGCCATGCAGTCGGACATGG
AGGCCATAGCGACCTGGAGCCGGGAGGTTAACTCCGTATGTGATGCACTT
CACAGCCTCTGCGATGCCCGCAGACACGCTCTATCAAGCTATGCCCCTTC
CTGGCGACCTTGCACTTCGTGTTTGTATTCCAAAACATACTTATCGTCTA
ATGTCCTTAGCATCGTCTCAAAAAGGAATGATCAAGGCCTGAAAACGCGT
ATAAATAGCGCTAGCCGTTGCCAGATGAAGCGTTTGAACGTACTTTCCTC
CATTGTCTGGCGCTCTGGACTGGGAGGCGTCACCTGTTACACAGCAACTA
TACCCCACTATGGCGCCACCAATGGGGCGTTTTCCTTCTGCGCTAGCAGC
ACCAATAACATGGCAGACGGTGCCTCCTCACAGGCCTCTGGCGGAGACTC
AGAAGCGGAGAGCCGGGAAAAGAGTAGGAGTTCTGTCAGCCACCCGGCCT
TTACAAAAGTCAAAGGGAGCAAGACCACGCCATCTTCGATAGACATTCCG
CCTGATAAACTCTCTCTGGAAAAGGTTCTGGCGGACATGAAGGAGGCAAG
CCGGGCAATGGGGGGGACGCTGAGGGGAGAGGAAGCCCTCGCCTTGATGG
CCTTGCTGGCTCGCGAAACGGTCCATCGGCAGACAAACGCCCACCGGGAC
TCTACACGCCCGCAGCATCTGTCTTCCTCGTTGACATTTCCGCCTTTGTC
GGGAGCGAGGCGTCGACGGAGAGCGAAGCAATTCCTGGAGTACGCGGTGT
TGTGCGAGAACGCCTACGATTTCTCGGAGGGCAAGGATTGGCTCGAGCCG
CCCGCTGGTTTCGAGAGCGTGTCTCGGTGGGACTTGCTCTCCTTTCACAA
GGGCGGGGTGTGCATTCCTCGCCATGTGGTCCTGCGCGTGGATGGTGGCG
AGGGCACAAGACATCGGCGCCGGAAAACGCGCGTGCTGGTGGTGGTGAGG
GGAACCGCCGAGGTCACGGATGCAGCCATCAACATAGCCATGGTGCCAGG
AGGCTGGACGCACCGGGGGAAGGAGTACCAGTGCCACCAGGGGATCGTCG
AGTCGGCCGAGTTTCTGGCGCGCATGGCCCGGCCCGTGGTGTGGCGCGCC
TTGGAGGGCCTGCGACAAGAGGGGGGGGACCCGGGCAGCGAGGTGGAGGT
GGTGCTGACAGGGCATTCCCTCGGAGGCGCCACGGCGGCCGTAGCGGCCC
TGAAGCTCCAGGGCGAGTTCGGTCCCCGCGTGCCCGTCAAGAGCGTGGGC
TTCAGCACCCCGGCCAGCCTCGCCATCGACCTGGCCTCCGCCCCCGCCAC
CCGGCGCGTCGTCACCACGCTCGTCCAGGGCGCGGATGTGATCCCCCGGT
GCTCCACGCGCAACCTGCAGGAGCTCAAGCGCCGGGCCCAGAACGTGCTT
GTGGAGGAGGAGGTGGAGTCGATCAAGCAGATGGTGCGGGAGGAGCTGGG
CCGACGTGGAGACGCTTGGGGCCGGGAGCTGACGGGCCTGCTCCTGTCCA
CGGCAGAGGGGGCCACGCAGCAGCTCCCGGGGGCCTGGCGGGACATGCTG
CCTCCCATCTTGAAGGCGGAGGGTCGGGAGACGCAGGGCGTGGGCGGGCT
CAAGGCGGCCTTCGGGGGGATCTTGGCGCGGTACCTCCCGGCCTTGGCCC
CGGAAGGGGGGGGCGGCGAGGACAAGGAAGAGGGCGCAGACGGGGGGGAG
GGGAACCGGTCCAGGGGGGTCAACGCCACGGAGAGAAGCAGGGATGATGG
GCACACGGCCCTCGAGGGCGGGGCAACGCTCTCCACGGAGGCGAGGCGAA
GGCTTGAAGAGGTTCTGGGCGAATACCAGGCCGTCCTGGACGCGGAGATC
GCCTTCGCCAAAGACCAATTGGAGCGCATCAAGCGCCAGACCTTCCAGTA
CTACCTGCCATCGTCCTTGGCACCTCCAGCGGTGTCGGACGGAAGGGGAA
AGGAGCTTACCCACGGCCAGGAGGGGGGGAAGGAGGTTATGGAGGGAGTA
CAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGG
ACGGGGGGGGGGTCTTTAA

Coding sequence (CDS) from alignment at KK037248.1:258114..261132-

>rna8276 ID=rna8276|Name=rna8276|organism=Nannochloropsis gaditana|type=CDS|length=2085bp|location=Sequence derived from alignment at KK037248.1:258114..261132- (Nannochloropsis gaditana)
ATGCAGTCGGACATGGAGGCCATAGCGACCTGGAGCCGGGAGGTTAACTC
CGTATGTGATGCACTTCACAGCCTCTGCGATGCCCGCAGACACGCTCTAT
CAAGCTATGCCCCTTCCTGGCGACCTTGCACTTCGTGTTTGTATTCCAAA
ACATACTTATCGTCTAATGTCCTTAGCATCGTCTCAAAAAGGAATGATCA
AGGCCTGAAAACGCGTATAAATAGCGCTAGCCGTTGCCAGATGAAGCGTT
TGAACGTACTTTCCTCCATTGTCTGGCGCTCTGGACTGGGAGGCGTCACC
TGTTACACAGCAACTATACCCCACTATGGCGCCACCAATGGGGCGTTTTC
CTTCTGCGCTAGCAGCACCAATAACATGGCAGACGGTGCCTCCTCACAGG
CCTCTGGCGGAGACTCAGAAGCGGAGAGCCGGGAAAAGAGTAGGAGTTCT
GTCAGCCACCCGGCCTTTACAAAAGTCAAAGGGAGCAAGACCACGCCATC
TTCGATAGACATTCCGCCTGATAAACTCTCTCTGGAAAAGGTTCTGGCGG
ACATGAAGGAGGCAAGCCGGGCAATGGGGGGGACGCTGAGGGGAGAGGAA
GCCCTCGCCTTGATGGCCTTGCTGGCTCGCGAAACGGTCCATCGGCAGAC
AAACGCCCACCGGGACTCTACACGCCCGCAGCATCTGTCTTCCTCGTTGA
CATTTCCGCCTTTGTCGGGAGCGAGGCGTCGACGGAGAGCGAAGCAATTC
CTGGAGTACGCGGTGTTGTGCGAGAACGCCTACGATTTCTCGGAGGGCAA
GGATTGGCTCGAGCCGCCCGCTGGTTTCGAGAGCGTGTCTCGGTGGGACT
TGCTCTCCTTTCACAAGGGCGGGGTGTGCATTCCTCGCCATGTGGTCCTG
CGCGTGGATGGTGGCGAGGGCACAAGACATCGGCGCCGGAAAACGCGCGT
GCTGGTGGTGGTGAGGGGAACCGCCGAGGTCACGGATGCAGCCATCAACA
TAGCCATGGTGCCAGGAGGCTGGACGCACCGGGGGAAGGAGTACCAGTGC
CACCAGGGGATCGTCGAGTCGGCCGAGTTTCTGGCGCGCATGGCCCGGCC
CGTGGTGTGGCGCGCCTTGGAGGGCCTGCGACAAGAGGGGGGGGACCCGG
GCAGCGAGGTGGAGGTGGTGCTGACAGGGCATTCCCTCGGAGGCGCCACG
GCGGCCGTAGCGGCCCTGAAGCTCCAGGGCGAGTTCGGTCCCCGCGTGCC
CGTCAAGAGCGTGGGCTTCAGCACCCCGGCCAGCCTCGCCATCGACCTGG
CCTCCGCCCCCGCCACCCGGCGCGTCGTCACCACGCTCGTCCAGGGCGCG
GATGTGATCCCCCGGTGCTCCACGCGCAACCTGCAGGAGCTCAAGCGCCG
GGCCCAGAACGTGCTTGTGGAGGAGGAGGTGGAGTCGATCAAGCAGATGG
TGCGGGAGGAGCTGGGCCGACGTGGAGACGCTTGGGGCCGGGAGCTGACG
GGCCTGCTCCTGTCCACGGCAGAGGGGGCCACGCAGCAGCTCCCGGGGGC
CTGGCGGGACATGCTGCCTCCCATCTTGAAGGCGGAGGGTCGGGAGACGC
AGGGCGTGGGCGGGCTCAAGGCGGCCTTCGGGGGGATCTTGGCGCGGTAC
CTCCCGGCCTTGGCCCCGGAAGGGGGGGGCGGCGAGGACAAGGAAGAGGG
CGCAGACGGGGGGGAGGGGAACCGGTCCAGGGGGGTCAACGCCACGGAGA
GAAGCAGGGATGATGGGCACACGGCCCTCGAGGGCGGGGCAACGCTCTCC
ACGGAGGCGAGGCGAAGGCTTGAAGAGGTTCTGGGCGAATACCAGGCCGT
CCTGGACGCGGAGATCGCCTTCGCCAAAGACCAATTGGAGCGCATCAAGC
GCCAGACCTTCCAGTACTACCTGCCATCGTCCTTGGCACCTCCAGCGGTG
TCGGACGGAAGGGGAAAGGAGCTTACCCACGGCCAGGAGGGGGGGAAGGA
GGTTATGGAGGGAGTACAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGGACGGGGGGGGGGTCTTTAA

Synonyms

Publications