EWM22505.1, cds8251 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22505.1
Unique Name	cds8251
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037248.1:257527..258048 -
Alignment location	KK037248.1:257221..257457 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM22505.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100011g87.3505.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:257527..258048 -
KK037248.1	supercontig	KK037248.1:257221..257457 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM22505.1 vs. NCBI_GenBank
Match: gi|585103011|gb|EWM22505.1| (hypothetical protein Naga_100011g87 [Nannochloropsis gaditana])

HSP 1 Score: 502.286 bits (1292), Expect = 1.283e-179
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0

Query:    1 MLQALVLEKTRLAASAVKEEAEERARDLLSTVGAEGVREKAMETFQAVADSVRGLRAQTEAALPGNNEERAGREAVQEPEPSALSASSPETRGSLADAPAVTSEEGESEALYPPGEIFHIQPCQSPGPAAREGSKEAGRQGAACGYELRRVRDVRFFDGIVLSSDMFSAHLLSSTRNSRARLSEQIRGGVGTLRAVQRCGRRWNEGRTTSIPSVSGVRDLRCNVKGISRSIEMPRAPNKIKSERSQPSFLGG 252
            MLQALVLEKTRLAASAVKEEAEERARDLLSTVGAEGVREKAMETFQAVADSVRGLRAQTEAALPGNNEERAGREAVQEPEPSALSASSPETRGSLADAPAVTSEEGESEALYPPGEIFHIQPCQSPGPAAREGSKEAGRQGAACGYELRRVRDVRFFDGIVLSSDMFSAHLLSSTRNSRARLSEQIRGGVGTLRAVQRCGRRWNEGRTTSIPSVSGVRDLRCNVKGISRSIEMPRAPNKIKSERSQPSFLGG
Sbjct:    1 MLQALVLEKTRLAASAVKEEAEERARDLLSTVGAEGVREKAMETFQAVADSVRGLRAQTEAALPGNNEERAGREAVQEPEPSALSASSPETRGSLADAPAVTSEEGESEALYPPGEIFHIQPCQSPGPAAREGSKEAGRQGAACGYELRRVRDVRFFDGIVLSSDMFSAHLLSSTRNSRARLSEQIRGGVGTLRAVQRCGRRWNEGRTTSIPSVSGVRDLRCNVKGISRSIEMPRAPNKIKSERSQPSFLGG 252

The following BLAST results are available for this feature:

BLAST of EWM22505.1 vs. NCBI_GenBank

BLAST of EWM22505.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585103011\|gb\|EWM22505.1\|	1.283e-179	100.00	hypothetical protein Naga_100011g87 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8275	rna8275	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications