rna8226, rna8226 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8226
Unique Name	rna8226
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3057
Alignment location	KK037248.1:128755..130138 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100011g38.3498.mrna
Orig protein id	gnl\|cribi\|Naga_100011g38.3498
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:128755..130138 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g38	gene7968	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8226	rna8226-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22498.1	cds8202	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:128755..130138-
coding sequence from alignment at KK037248.1:128755..130138-

mRNA sequence

>rna8226 ID=rna8226|Name=rna8226|organism=Nannochloropsis gaditana|type=mRNA|length=3057bp
CCGGGGCTCATCTGTACATCTTTACAATTACAGCACCTCCTGTGGTCGAT
ATTGATGCAAATCTGAAGTTCAAGGAAGACCATGATTGTCGACGATGCTC
AGTCTATCTTCGTGCGCAATTTGCCTTTCAGTGCCTCAACAACGGACTTG
GAAGTATTGTGTGGGAAAATTGGCCCTGTAAAACGTGCATCCATCATTCA
ATCCGGAGATGGCGTCTCTCGAGGCTTTGGATTTGTTAAATATGCTATGC
CAGAAGATGCCATGCGCGCCGTCGCCATATTAAGTGGCGCTGAATTAAAT
GGACGCACCCTTTCCATTGAGCTAGCTTTAAAACGTGGTCAGAAGCCCTC
GTATCTGTCTCAAGCATCAAAGGCTGAAGGCATTGAGGGGAAGAAAAGCC
ATGAAAGTCATTCTTCGACTTCTTTGTCGACCTGCGTGAAGACAAAAAAG
GGAGACGGGACAGGTCCCGAACTCAAAAGATCATATGATACGGCAAATAG
TAAGGATAGCATGGATAGGAATAACAACAAACGCGGTAAACATTTGGATG
CTTCCGGTGCGTCTAAGAAAAAAAAGTCAGGGCACGCCTTATTATCGTCT
CAGCCATCCAAGACTCTCATCCTCTTTAACATGGCTTCCCGGACAACTGA
GAAGCAAATCTTCAAGCGGGTTAGGAAACTTGAGCCCCCTACATCTGTCA
AGATAGAGGACATAGATGGCTCCGCCCGAGTTGCCATTATACACTTCAAC
ACTTCTCTGGCAGCCAAGAAGGTCCAGAAAAAGCTAAATAACCACGTCAT
TCACGGGCAGATAATCAAAGTTCGCCCATTCCACCCCAAAGTGAATATTG
ACGCATCTTTGGAAGCGAAATTCTCGATTAATGACACACTGAAAAGATCA
CTGACAAATTCAGACTTAGATGAAATGAAAGGACAAGCGAAGCGCAACAA
TCGCCTGATAATTCGTAATTTGAGCTTCAAGGCAACAGAAGATGATCTGA
AGGTCGCGTTGTCCAAATTTGGTCCTATATTGGAGGCAAGAATTCCCCAT
GTAGCAGTGCGTGGAATTGAAGGGCGACGTGGTTTTGGATTTGTGACGTT
TGCTTGTGCAGAAGATGCAGAAAAGGCAGTGAAGAATGAAATACCGCTAA
GAATTCGAGGTCGTGAGGTAGCTGTCGACGTTTGTATGGGTCGAAAGGAG
TATGAAGAGGAGAGGAAAAACCATAAAGAAGACGATCTAAATAAAGGGAA
AGCAGAAAATTCTGGTGAAATTGAACATAACACAACATCATTCGGGGAGG
AGTCCGTATCGGTCCCTGGGAATGTGCCTTCCTCAGACATAACAGTAAAA
GATACTGATACCTTTTCCGAAGCGCATGAACGTGAAGAAACTCCGACGGG
TGTAACAACAGAGAAGACGTGCCCGAAGAACCCTCCCTCGTCCGATGTGA
ATGAAGGCAAAGCTATTTTCGTGAGGAATATCCCTTTTGATGCTACTTCC
GAATCTTTGAAGCTGGCTTTCCATGATTATGCTCCGGTCGCATTCGCTAT
AATTGTGAAGGACTCTACAACAGGATTGTCTAAAGGCACAGCTTTCATAA
AATTTAAGAGTAAGGTCGGTATGGAGACAACTTTGAGTGCAGCTGCTTGT
GGAGGTGGAACCCTTCCACTGTTGGGGAGAGATGTGAAGATAGACAGGGC
ACTGGAAACAAAGGATGCTCCGAAGGCTGTTGTTTCTGATCCTGTAGCTG
CTGATCTCAGCAGCGGCCACAAGAGCAAAGTGGACCGTCGAAATTTGTAT
CTGGCAAACGAAGGCCTGCTGATTGGTTCAGAGGCACAAAATGAGATTCC
TAAAGGCGATATTGAAAAACGGCAGCGAGAGCAGGCGGAAAAGAAAGCCA
AGCTCCGAAATCCCTATTTTTTCGTGTCACCAACGCGACTATCGATCAGA
AATCTCCGTCGCTCAGTTGGTGATGAAGAAGTGCGGAATTTACTTGTGCA
AGCTGTTCAAAAAGGCATTAATGCGAAGCAAGTCACTCCTGATGACCTAA
TATTGCATCTTAAAGCGCAAGGTTTGTATGAACAGGCACTTCGACACGAG
GATTTGAGCGTTTTCCAACCTCGATCCCGAGATATTCATATCAAAGTGAA
GATTATGAGGGATTTAAGCAAGACTCCTATGAATGGTGTATTCCCGTCAA
GAGGCTATGCTTTCGCGGATTTCACATCCCATATTCACGCTCTAGCTGCG
CTTCGCCACCTGAACAACAATCCCACATTCTCGGGTTTTTCAATCACGTC
TGGTGCGGCAAAGTGTTCACGCTTGATCGTTTCATTTGCTGTCGAAAACC
ATAAAGCTCTTCAAAAAAAAGCTCTTCGCGGCGAAAAGATACGTACGGCC
CTAGCACCCGAGGCTTCCTCGATAGCGCGTATGGTTGGTGGCAAGCACGA
CGCCCATTCGAACAAATGTGCTTTGGGAAAATCAGATGATCCACACAATA
GAGGAGCTCACCAAGCACCTCTCGAGGAACCTTGCTCGGAGACCGCGGAC
AGGAAAAGGCGAGGGAGTCGACAAAGAGAGCAAAAAAGGCGGCGGAAAGA
TGATGGAGAGGAGAAAAATTTATTGTCCGTGAAAAGACGTGTGGAGAGTC
CGTCCATTTCTCAAGGGAACTATTTGAAAGCTTTGGCGGCTGGAAAGAGA
AAACTAGCAAGTGATGAATCGGGAGGAGAACTTTCGATCCAAAGACTACG
ACAACGAAACTCGAAAGCTTTCGTTTGCCGACCGGTGGTAAAAGAGCAGA
CGAGTGATTTTTCATACGGAGAATCCACCTTCCAAGCAGCAAATCCCAAA
ATCAAGCGACAAGCTGTATCGAGAACAGATATGAGAGAAGATAAGCAATT
TTTCGAAACGGTCAATGATTATAAAAAGAAGCTCTTGGGAGGAACAACGC
AAGTAGAGCAGTCGTTTCAAAATGAGACGACGGGCAAGTCTGAAAGATGG
TTTGAAATGTAGAAAACGAAGGATGAAAAATAAATGGATAAATGGTTCGC
TCAACAG

protein sequence of rna8226

>rna8226-protein ID=rna8226-protein|Name=rna8226|organism=Nannochloropsis gaditana|type=polypeptide|length=128bp
MSDEASLIQERLDDLALTMFNGVLEVSRVSGDEGRKDDKCHVAASELGIK
LGTVLREIEEAIGNLLVIQLPTADRCQQIDTVKVTQSRVRELQSEYERVK
IELDTLVSEAENISIKLQSAFTYHVKKI

mRNA from alignment at KK037248.1:128755..130138-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8226 ID=rna8226|Name=rna8226|organism=Nannochloropsis gaditana|type=mRNA|length=1384bp|location=Sequence derived from alignment at KK037248.1:128755..130138- (Nannochloropsis gaditana)
CAGACGCTGATGGAATTATGGAAGGAGAAACAGTCCAGATGGTAAGTTTC
GCGCCAGAGGTCTTACGCCCCCTATAAGGCGTGTATGAGCAAGGTATGAT
GCTAAGAGACTGAAGGTGACTCCTCTGTAGTCGTCCAAGTAGGCTGCGAC
GCTAGCTATCCAGAATCTAGGAGAAGGGTTACGGGTGAAGAGGGACTGCC
GTGATCCGAGCCGCTCCCTCACCCGTCTCCTACTCCCTGCCCTGTCTTGG
CGTCGTGGGGGAGCAGGAGGCCACACCTGTGGCCACAGGGCCCGTGCGCT
GTCGTTCCTTCTTCGATCGTGGTATATGGAGTGAAAATACCAGAGGCATT
GGCGGAGGGACTGAGTAGCGCGTGTAGATGGTGTGGCCTGTGCATGACAA
AGGATTCAACCTTTGACCTCCAAACAAACATATCTCAACAGACACAACGC
GCAGACCCATCGGAAATTCATGCGACGACACTGCCGAGGGCGTATTTTTC
TGTCTGTTTAAACAATGTCTGATGAGGCAAGCTTGATTCAGGAGCGATTA
GACGATTTGGCTTTGACCATGTTTAATGGCGTTTTAGAGGTCTCTCGCGT
AAGCGGAGATGAAGGGCGGAAAGATGATAAGTGCCACGTTGCGGTAAGGA
TGGGAGCGAAAATTGGATACCATAGAAAGGCATTGAGATATGCAAGAATG
CAGTTGGTATTGGGGTGCTTCATGAGACGATCATGACGGGTCAAGTTCCA
TGTTCTGTTTTCTTTCTCAGTGTGTCACCACTTGTGGCCTCCCACAAGGT
ATACAAACTGATCTCATTCACCTTGTTTTTTAACACATCAATGAAGGCAT
CAGAATTGGGCATAAAATTGGGTACCGTACTCCGCGAAATTGAGGAGGCG
ATAGGAAATCTTCTGGTTATTCAACTACCAACCGCGGATCGATGGTAAGC
TAAGAAATGTGTATGATGGAACAGCAAAATGTGTTTTTCCATTTATCACA
TGCTGTGTTACATAGTGTGAATCTCGTGAACACGGTCTTGAAACACCGTT
CTTACCATGTTCCACTTCTCGTTTTCCAGTCAGCAAATTGACACTGTGAA
AGTAACGCAAAGCAGAGTCAGGGAATTACAGTCGGAGTATGAGCGAGTGA
AAATAGAGCTAGACACACTTGTGAGTGAGGCAGAAAACATATCAATCAAG
CTGCAGAGCGCATTCACATATCACGTGAAGAAGATCTGAGCGCTACGCGA
CGGTTAGGAGAGGGCCGGAAGACGGGTGTGAGAAGGAAAGCCGAGCAAAT
TCGAAAAATCTCAGTGTTGCGGAAAGTGGTTGCATATGCATGCATGGGCA
AAAATTGAAGAACATCTGTATTATAAAAATAAGC

Coding sequence (CDS) from alignment at KK037248.1:128755..130138-

>rna8226 ID=rna8226|Name=rna8226|organism=Nannochloropsis gaditana|type=CDS|length=1161bp|location=Sequence derived from alignment at KK037248.1:128755..130138- (Nannochloropsis gaditana)
TCAGCAAATTGACACTGTGAAAGTAACGCAAAGCAGAGTCAGGGAATTAC
AGTCGGAGTATGAGCGAGTGAAAATAGAGCTAGACACACTTGTGAGTGAG
GCAGAAAACATATCAATCAAGCTGCAGAGCGCATTCACATATCACGTGAA
GAAGATCTGAGCATCAGAATTGGGCATAAAATTGGGTACCGTACTCCGCG
AAATTGAGGAGGCGATAGGAAATCTTCTGGTTATTCAACTACCAACCGCG
GATCGATGATGTCTGATGAGGCAAGCTTGATTCAGGAGCGATTAGACGAT
TTGGCTTTGACCATGTTTAATGGCGTTTTAGAGGTCTCTCGCGTAAGCGG
AGATGAAGGGCGGAAAGATGATAAGTGCCACGTTGCGTCAGCAAATTGAC
ACTGTGAAAGTAACGCAAAGCAGAGTCAGGGAATTACAGTCGGAGTATGA
GCGAGTGAAAATAGAGCTAGACACACTTGTGAGTGAGGCAGAAAACATAT
CAATCAAGCTGCAGAGCGCATTCACATATCACGTGAAGAAGATCTGAGCA
TCAGAATTGGGCATAAAATTGGGTACCGTACTCCGCGAAATTGAGGAGGC
GATAGGAAATCTTCTGGTTATTCAACTACCAACCGCGGATCGATGATGTC
TGATGAGGCAAGCTTGATTCAGGAGCGATTAGACGATTTGGCTTTGACCA
TGTTTAATGGCGTTTTAGAGGTCTCTCGCGTAAGCGGAGATGAAGGGCGG
AAAGATGATAAGTGCCACGTTGCGTCAGCAAATTGACACTGTGAAAGTAA
CGCAAAGCAGAGTCAGGGAATTACAGTCGGAGTATGAGCGAGTGAAAATA
GAGCTAGACACACTTGTGAGTGAGGCAGAAAACATATCAATCAAGCTGCA
GAGCGCATTCACATATCACGTGAAGAAGATCTGAGCATCAGAATTGGGCA
TAAAATTGGGTACCGTACTCCGCGAAATTGAGGAGGCGATAGGAAATCTT
CTGGTTATTCAACTACCAACCGCGGATCGATGATGTCTGATGAGGCAAGC
TTGATTCAGGAGCGATTAGACGATTTGGCTTTGACCATGTTTAATGGCGT
TTTAGAGGTCTCTCGCGTAAGCGGAGATGAAGGGCGGAAAGATGATAAGT
GCCACGTTGCG

Synonyms

Publications