rna8206, rna8206 (mRNA) Nannochloropsis gaditana

Overview
Namerna8206
Unique Namerna8206
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2266
Alignment locationKK037248.1:87382..88658 -

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Properties
Property NameValue
ProductPentatricopeptide repeat containing protein
Orig transcript idgnl|cribi|Naga_100011g19.3417.mrna
Orig protein idgnl|cribi|Naga_100011g19.3417
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:87382..88658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100011g19gene7949Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22417.1cds8182Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8206rna8206-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8206 ID=rna8206|Name=rna8206|organism=Nannochloropsis gaditana|type=mRNA|length=2266bp
CATGAAAACGTTGTTCCTCACGCATTTTACCAACCTTCATGCGACTTACA
CAGTCATGGTTGGCGCCACAAGGCGAGGTGAGACTCTTAAAGAGTCATCC
AAGGAGAAGGACGTTCGCATTTCTAACATCGTGGCCGCGAAAGGTAAGCG
CACGGGAAAAACTTTTTGATACCTTCTGTTGCCTCGTGTCTTTCTTGTAC
CAGATTTTTTTGACATGCCAAATTACAGGTTGGAAAGGCAAATTAAAGCA
CAAACTATTATTTGCTTACTGAAAGTATAACCATGTAGTTGTGTTCCGTA
GCTTGTACGCGTTATGATCATGTACCTATTTTCATGAGGCATATTTAGAC
AAATTGCTTGTTCTGTACGTCTGCTGGGCACGATTCATGTGAAGCAAATT
ATGCACGGTGTACATGGCACCATTTTTTTTTAATTTCGAAAATTGTGTCA
TTGATTTGAGTGCATCACGTAGTAGGAGCACGATTTGTCTTGGCAGCTCT
CCCGACCTTGTGTTTCTTACCCATCTCTGTCATCACCAACGTCAACATTT
TATGGTGCTTCCAGGCGTCGCCGATGCCATTCGCACGAGTTTGGGCCCTC
GTGGCATGGACAAGATGATCCAGCGCGGTGACGGGGAGGTCATCATCACC
AACGATGGCGCTACCATACTGGGGCAGATGTCAGTCTTCCATCCCTGCGC
GAAAATGCTCGTGGAGCTATCAAAGTCTCAGGACATCGAGGCGGGCGACG
GGACGACAAGTGTGGTGGTCCTTGCCGGCTCTATGCTAAACGCATGTTCT
GACCTTTTGGCCAAAGGAATCCATCCCACCATGATCGCGGACTCCTTCAA
GGCCGCCTCGGAGAAGGCAGAGGAGATCTTACAGGCCATGTCGAAGCCCG
TGGACCTTCGCGCGCGGGAGACGCTCATTGACGCGGTGGTGACATGTCTG
AGCAGTAAGGTGGTCTCCCAAAATTCCGACATCCTTGCCCCGATCGCCGT
GGACGCGGTGCTGAAGATCATCGACCCCGACACGGCCAGGAACGTGGATC
TGAACGACATCCGTATCGTCAAGCAGCTCGGGGGGACGGTGGACGACACC
GAGCTCGTGCCAGGGATAGTTTTTGAGAAGGGCGCCAACAAGGGGGCAGC
CGGAGGCCCTACCCGCATCGAGAAGGCGAAGGTGGGCCTGATCCAATTCC
ACCTTTCTGCCCCGAAGACGGACATGGAGAATAACGTAGTCGTCTCCGAC
TACGCGGCCATGGACCGGATCTTGCGGGAGGAGCGCAAGTACATATTGAA
CCTGGTCAAGAAGATCAAAAAATCTGGCTGCAATGTCCTGCTTGTGCAAA
AATCCATTCTTCGGGACGCCTACAACGACCTTTCCCTCCATTTCCTGGCC
AAGATGGACATCATGGTGATCACGGAGGTTGAGCGGACCGACGTCGAGTT
CATCCAACGCACCCTGGGCTGCATGCCTGTTGCGCACATCGACTCGTTCA
CGCCCGATAAGCTTGGTTCGGCGGAGCTGGTGACGGAGGTGACGGTGCCG
GGGGGGTCTCACAAGGTGGTGAAGGTCACGGGTGTGCAGAACCCGGGCTC
GACCATGTCCATCCTGATCCGCGGCTCGAACAAGCTGGTCTTGGAGGAGG
CGGATCGCTCTCTGCACGACGCCCTTTGTGTGGTGCGGAGCCTGGTCAAG
AAACGCTTCCTGATCGCCGGGGGGGGGGCGGCGGAGACGGAAGTGAACCT
GGGTCTCACCGAGTGGTCTAAGATGCAGGCGGGGATGAAAGCCTACTGCG
TGGCTGCGTTCGCCCAGTCCTTGGAGGTGGTGCCTTACACGCTCGCGGAG
AACGGAGGATTGAATCCCATCGCGATCGTGACGGAGCTTCGGCGTCGGCA
CGCGGGGGGGGAGAAGGGCACCGGTATTAACGTGCGACAGTCAAATATCT
CGGACATGTACGAGGAGAGGGTGGTGCAGCCCCTGCTGGTGAGCCTGAGT
GCCATCTCCCTGGCGTCGGAGACTGTGTGTATGCTTATGAAGATCGACGA
CCTGGTGCCCGTGGCGCGCGTGTGAGGAAGTTGACGCAGGACGTGCGCGG
GACAAGGGGGCGATCGTAGAGGACAAGAGTGTGTCCGGCCCCCGGGACGT
GTATATGCCTGGTGGAGAGGACAGAGGCAGAAGGAAGCAAGGAACGCGTA
GAAGAAGCCCGAGGGCTCCCTGTAGACAGTAACCGCAAAGAGTCAGAAGA
GATCCTGTTCTTCCCA
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protein sequence of rna8206

>rna8206-protein ID=rna8206-protein|Name=rna8206|organism=Nannochloropsis gaditana|type=polypeptide|length=297bp
MPVLMRRNRFDGFVFYLLVSVALILVPLSHAFVPRPQQNLPMHPKQLSTR
SLGREMITTTLGGENMSWQDGLALLESLESPTVEMYNKVLRACALSGQWE
PGCWLLDEMVELGLDPDRQSFVSAIEACGTQGRYEEANHVLSYMKEAEHE
LDEEVYGFVAKACEVAGNWRQLMWTFDEMMMRDLVPDLVSYNRAIGGCGE
EGEWEMALSLVLEADSRGITPDYVSYDLAMRALHKAKQANRAHSLLETMK
SAGVGPGKEMLGMVLELCREAGDVARAEEIVRELDRGGLSHRESEGR
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mRNA from alignment at KK037248.1:87382..88658-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8206 ID=rna8206|Name=rna8206|organism=Nannochloropsis gaditana|type=mRNA|length=1277bp|location=Sequence derived from alignment at KK037248.1:87382..88658- (Nannochloropsis gaditana)
TCCTTGCGCCTGAAAGCCTCCTGTCCTATTTTTGCTTTCTTTAGGCATTG
ATTGATCGGCCACAGAGAGAAATTTACCGATAGATCTCCATCAAGAGCAT
GCTATAAGGTCTTTTTTAAAAAATGTACGTGTTAAATTGGTGAATAGAGT
TTCTTGGTCTCCCATTCATCACGAAAGCGGGCGGTAACGCGTTCTAGGAC
CATTACCCCAGGCGGATAAGTATTGTTTTGGTAATCGGTACGACGCCCGT
GTGAGGCTCACGGTAAAACATGCCATCACGACACAGGAGACGTTTTAATG
CCTGTGTTAATGCGGCGAAACAGATTTGACGGGTTCGTTTTTTATTTGCT
GGTTTCGGTAGCCCTCATCTTGGTCCCGCTGTCACATGCTTTCGTGCCTC
GACCGCAGCAAAATCTACCTATGCACCCCAAGCAGCTTTCCACGCGAAGC
CTAGGCCGTGAGATGATCACCACGACGCTTGGCGGAGAAAATATGTCCTG
GCAAGATGGCTTAGCCCTTCTTGAATCGCTAGAGTCGCCCACAGTAGAGA
TGTATAACAAAGTATTGAGAGCCTGTGCGCTGAGCGGTCAGTGGGAACCC
GGCTGCTGGCTTCTCGATGAAATGGTTGAACTGGGTCTAGACCCAGACAG
GCAAAGTTTTGTCTCTGCCATCGAGGCTTGTGGCACGCAGGGCCGCTATG
AGGAGGCAAACCACGTGTTGAGTTACATGAAGGAGGCCGAGCACGAGCTG
GACGAGGAAGTGTACGGCTTTGTGGCCAAAGCCTGCGAGGTTGCGGGGAA
CTGGAGGCAACTCATGTGGACTTTCGATGAAATGATGATGCGCGATCTGG
TCCCTGACTTAGTAAGCTACAACCGTGCGATTGGAGGTTGCGGTGAAGAG
GGGGAGTGGGAGATGGCCCTTTCCTTGGTGCTGGAGGCGGACAGCCGGGG
AATCACGCCTGACTATGTCAGCTATGATCTGGCCATGCGAGCACTGCACA
AAGCCAAGCAGGCGAATCGTGCGCACAGTCTCCTGGAGACCATGAAAAGC
GCAGGAGTCGGACCTGGGAAAGAGATGCTAGGGATGGTGCTGGAGCTCTG
TCGTGAGGCGGGCGACGTGGCGCGAGCCGAGGAAATTGTGCGCGAATTGG
ATAGAGGGGGGCTTAGTCATAGGGAAAGCGAAGGTAGATGAGATGATAGA
TGTATGATGATAAGTTTGTGGGGGGAAAAAACGTGTAAATAGTAGGAAAA
GAAAGAATTATATCACATGAAGTCTTG
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Coding sequence (CDS) from alignment at KK037248.1:87382..88658-

>rna8206 ID=rna8206|Name=rna8206|organism=Nannochloropsis gaditana|type=CDS|length=894bp|location=Sequence derived from alignment at KK037248.1:87382..88658- (Nannochloropsis gaditana)
ATGCCTGTGTTAATGCGGCGAAACAGATTTGACGGGTTCGTTTTTTATTT
GCTGGTTTCGGTAGCCCTCATCTTGGTCCCGCTGTCACATGCTTTCGTGC
CTCGACCGCAGCAAAATCTACCTATGCACCCCAAGCAGCTTTCCACGCGA
AGCCTAGGCCGTGAGATGATCACCACGACGCTTGGCGGAGAAAATATGTC
CTGGCAAGATGGCTTAGCCCTTCTTGAATCGCTAGAGTCGCCCACAGTAG
AGATGTATAACAAAGTATTGAGAGCCTGTGCGCTGAGCGGTCAGTGGGAA
CCCGGCTGCTGGCTTCTCGATGAAATGGTTGAACTGGGTCTAGACCCAGA
CAGGCAAAGTTTTGTCTCTGCCATCGAGGCTTGTGGCACGCAGGGCCGCT
ATGAGGAGGCAAACCACGTGTTGAGTTACATGAAGGAGGCCGAGCACGAG
CTGGACGAGGAAGTGTACGGCTTTGTGGCCAAAGCCTGCGAGGTTGCGGG
GAACTGGAGGCAACTCATGTGGACTTTCGATGAAATGATGATGCGCGATC
TGGTCCCTGACTTAGTAAGCTACAACCGTGCGATTGGAGGTTGCGGTGAA
GAGGGGGAGTGGGAGATGGCCCTTTCCTTGGTGCTGGAGGCGGACAGCCG
GGGAATCACGCCTGACTATGTCAGCTATGATCTGGCCATGCGAGCACTGC
ACAAAGCCAAGCAGGCGAATCGTGCGCACAGTCTCCTGGAGACCATGAAA
AGCGCAGGAGTCGGACCTGGGAAAGAGATGCTAGGGATGGTGCTGGAGCT
CTGTCGTGAGGCGGGCGACGTGGCGCGAGCCGAGGAAATTGTGCGCGAAT
TGGATAGAGGGGGGCTTAGTCATAGGGAAAGCGAAGGTAGATGA
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Synonyms
Publications