rna8097, rna8097 (mRNA) Nannochloropsis gaditana

Overview
Namerna8097
Unique Namerna8097
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1276
Alignment locationKK037247.1:551771..553552 +

Link to JBrowse

Properties
Property NameValue
ProductAmino acid transporter, transmembrane
Orig transcript idgnl|cribi|Naga_100126g7.3023.mrna
Orig protein idgnl|cribi|Naga_100126g7.3023
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:551771..553552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100126g7gene7841Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8097rna8097-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22597.1cds8075Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8097 ID=rna8097|Name=rna8097|organism=Nannochloropsis gaditana|type=mRNA|length=1276bp
TGTCATTTCTACTGAGAACATAAGGGTTGTCAGCTCGAGCGTACAACTTT
GGTAGGATATAGAACCTTTGACGCCACGGATGGCGTACTTGTTTTAATTT
GTGCATGGCAAATTCTACAGCCCCCTTACCTTTACCTCCCCACCCCATAC
AATTTGCAGGCACGATCAGAAGAAGACTTCTTAAATGCTGCTTTCACCTA
TCATCATTCTAGTTGGTCGCCAGCCTTCTTGCTAGTTGAAGTCGTTTGAT
AGGGCAGCAAAGCAATGCACATTACATTCACCAGTATTAACGCTGCCAAT
TTAACGGAACTAAGGCTCTTAAACGACACGACCTTTCCCGTGCGTTACAA
CGATAAATTTTACGCTGAGGTTTTGACGACCCTCCCAGATTTTACAAAGT
ATGCATGCATTCAAAATGAGGTGGTGGGAGCAATCTGTTGTCGCCTAGAG
GAGGGCATCGAAAGTGTCGAGGGCCAGTGCGACCATCGCACCAGGAGTCT
GGTGTCGTCATTACAAAAGGATCGGCCGCAGGATGTGCAAGAACATTCGA
AAGAAAGTGACACCAAGGATAATTCCCTGAGCACCGAAAACATTTTGGCG
GCAGATGACATTCATGGCAGGCAAGTCGTCGACATCCCAAGCACACCGAG
TGACAAGCAGTTTAAACTGTACATTATGACTCTGGGCGTACAAGCTGCAC
ATCGCGGACGAGGGATCGGCTCTCAGCTGCTCACCTCTGTTTTGCAGGCT
ACTAGAAGGCCTCCTCACGCTAACAGAATCCGAGAGATCTATCTCCACGT
GCAAACCAGCAACGCGGACGCAATTCATTTCTACTCCAAGTTCGGATTTG
AGACACAGAGCAGAATCCAAAACTATTACAAGCGAATCGAGCCCCCAGAC
TGCTTTGTCCTCTCTCTTTTGATGGATGGCGGAAAGCAGAAGCACACAAG
GGAGAACGGAGGGGCTTCAAGCGAAGAGGGGGGGAGAGGGCATCCCACAT
CCTCGTCGTCGCCCTTGGCCACACTCGCAGACCTCGCTTCGACGGCCTCC
TCTGCAGAGGTCCACGCTAGAGAACGAAGTAAAGGTCTCGATTGAGTCAG
GACGCTTGAGTCCTTCAAGAGGATGGAAGATAATCGAAGAGAGGCCTGGA
GGGTAATGCGCACGTAACTTGGCCATACCGAGAGGCGGCTACGGGATGTC
GACCATATTTTTTGAAATTCAGAGACGACTGAAAAGGTAAATGCAGAGAA
AAACAATCATATAAGCTTTTTGATGG
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protein sequence of rna8097

>rna8097-protein ID=rna8097-protein|Name=rna8097|organism=Nannochloropsis gaditana|type=polypeptide|length=503bp
MSRQFRAALFVLLLVSSLLTFVSATPSSSRSAGNGNSPRLQKDSYIIKKS
RDGASSTLPRRKSRALFAGIRGGGVGGSQPPAPVAPPPGTSSSVASMVNL
AKNIIGGGMLALPAGLAAGAGTGYIPAYLLLAFSAVSSAYTFVLVGRSVE
ATRSRSFKEAWSRTVGPAHAWVVDYAITALAFAVCIVYACFVGDTFTSLL
KGAGLPAWLSSREASILAVTITVLFPLTLLKDLSALQYSSYVGIAAVIYT
VLFMAWRFWDGSYAKGGAFFAAIAPELRPRPAHFGPWKMSVGTAILFSMF
STSYMAHTNAVKFYNELEGRSVRRFWQVVAGAMGSATVIYLAAMTLGFET
FGLASQGLVLNNYHVSQDVLATMGRIATAVSIIGAHPLLFSGLRDSFLSI
LPPNVVSRPSTWLLSTIVLLGGATCISLLCKDVGLLVSLVGSSLGAAIVY
VFPPFMYLHLLRRRKDIHTSRGEILLLHATILFGVVSGCFGTWVALTGGG
GGK
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mRNA from alignment at KK037247.1:551771..553552+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8097 ID=rna8097|Name=rna8097|organism=Nannochloropsis gaditana|type=mRNA|length=1782bp|location=Sequence derived from alignment at KK037247.1:551771..553552+ (Nannochloropsis gaditana)
ATCTTTGAACAGTTTGAAGAATGTCTCGGCAATTTCGGGCAGCGCTATTC
GTCCTCTTGTTGGTGTCTAGCCTTCTGACGTTCGTGTCAGCAACACCATC
CTCATCACGCAGCGCCGGCAACGGCAACTCCCCCCGGCTCCAAAAAGATA
GCTACATAATTAAAAAGTCTCGTGATGGCGCTTCCAGCACATTGCCTCGC
CGCAAGTCCCGTGCATTGTTCGCAGGAATCCGAGGCGGGGGTGTTGGCGG
CTCCcagcctcctgctcctgtcgcacctccccccggcaCCAGCTCTTCAG
TCGCCTCAATGGTCAACCTTGCCAAAAACATCATCGGTGGCGGCATGCTT
GCTCTACCTGCAGGATTGGCCGCAGGGGCTGGGACAGGATACATCCCTGC
CTATTTATTGCTCGCCTTCTCAGCCGTCAGCTCGGCGTATACCTTTGTGT
TGGTGGGGCGGTCGGTCGAAGCCACGCGTTCCCGTTCTTTCAAAGAGGCC
TGGTCACGCACGGTGGGGCCCGCACACGCTTGGGTGGTGGACTATGCTAT
TACGGCCTTGGCGTTTGCGGTCTGCATTGTGTACGCTTGCTTTGTGGGCG
ACACTTTCACGTCTCTTTTGAAAGGTGCCGGGCTGCCGGCATGGCTGTCT
TCCCGGGAAGCCAGCATTCTCGCAGTCACCATCACGGTGCTGTTCCCGCT
CACGTTGCTTAAGGACTTGAGTGCCTTGCAGTATTCCTCCTATGTCGGGA
TCGCCGCGGTCATCTACACGGTCCTTTTCATGGCCTGGCGCTTTTGGGAC
GGGAGCTACGCCAAGGGCGGTGCTTTCTTTGCCGCTATCGCGCCGGAACT
CCGTCCCCGTCCCGCCCATTTTGGTCCCTGGAAGATGTCCGTGGGTACGG
CGATCCTCTTTAGCATGTTTTCCACCTCCTACATGGCGCACACGAACGCG
GTCAAGTTCTATAACGAGCTCGAGGGCCGCAGCGTCCGTCGTTTTTggca
ggtggtggcgggggcgaTGGGGTCCGCCACCGTCATCTACCTGGCCGCGA
TGACGCTCGGCTTTGAAACCTTTGGCTTGGCTTCGCAGGGTCTGGTCCTG
AACAACTACCACGTCTCCCAAGACGTGTTGGCCACCATGGGCCGGATCGC
GACTGCCGTCTCGATCATCGGGGCACATCCCCTGCTCTTTAGCGGCTTGC
GCGACTCTTTTTTGAGCATCTTGCCCCCCAATGTGGTCTCTCGGCCCTCG
ACCTGGTTGTTGTCCACGATTGTCCTCTTAGGCGGGGCTACATGCATCTC
GTTGCTCTGCAAGGACGTGGGTCTCCTCGTCAGCTTGGTGGGGTCCTCCT
TGGGCGCGGCCATCGTCTAcgtcttcccgcctttcaTGTACCTTCACCTT
CTAAGGCGGCGCAAGGACATTCATACCTCAAGAGGGGAAATCCTTCTGCT
GCACGCCACAATCCTCTTCGGTGTAGTGAGCGGTTGCTTCGGGACATGGG
TGGCTCTTacaggcggtgggggagggaagtaaaCGGAACAAGTTTGTGGG
AGCTGGTTTTTaggtgagggaagggacACGACCACATGAAAGTGAGCGAT
GGAGCCTATGAAAATTAGAAGCCAGGTCAGAGATCAAGAAAAAGATATTT
CGAAAATAGCACGCACCAAAAACTGCGGCTTAAAATACACCACATTCAAG
GTGATAAAATCTAAAATCACGTAGTATCGCTCAGCAAATTGACAGCAAGT
CTTTGCAGCACTGTTTAAAAGGATACATAGTT
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Coding sequence (CDS) from alignment at KK037247.1:551771..553552+

>rna8097 ID=rna8097|Name=rna8097|organism=Nannochloropsis gaditana|type=CDS|length=1512bp|location=Sequence derived from alignment at KK037247.1:551771..553552+ (Nannochloropsis gaditana)
ATGTCTCGGCAATTTCGGGCAGCGCTATTCGTCCTCTTGTTGGTGTCTAG
CCTTCTGACGTTCGTGTCAGCAACACCATCCTCATCACGCAGCGCCGGCA
ACGGCAACTCCCCCCGGCTCCAAAAAGATAGCTACATAATTAAAAAGTCT
CGTGATGGCGCTTCCAGCACATTGCCTCGCCGCAAGTCCCGTGCATTGTT
CGCAGGAATCCGAGGCGGGGGTGTTGGCGGCTCCcagcctcctgctcctg
tcgcacctccccccggcaCCAGCTCTTCAGTCGCCTCAATGGTCAACCTT
GCCAAAAACATCATCGGTGGCGGCATGCTTGCTCTACCTGCAGGATTGGC
CGCAGGGGCTGGGACAGGATACATCCCTGCCTATTTATTGCTCGCCTTCT
CAGCCGTCAGCTCGGCGTATACCTTTGTGTTGGTGGGGCGGTCGGTCGAA
GCCACGCGTTCCCGTTCTTTCAAAGAGGCCTGGTCACGCACGGTGGGGCC
CGCACACGCTTGGGTGGTGGACTATGCTATTACGGCCTTGGCGTTTGCGG
TCTGCATTGTGTACGCTTGCTTTGTGGGCGACACTTTCACGTCTCTTTTG
AAAGGTGCCGGGCTGCCGGCATGGCTGTCTTCCCGGGAAGCCAGCATTCT
CGCAGTCACCATCACGGTGCTGTTCCCGCTCACGTTGCTTAAGGACTTGA
GTGCCTTGCAGTATTCCTCCTATGTCGGGATCGCCGCGGTCATCTACACG
GTCCTTTTCATGGCCTGGCGCTTTTGGGACGGGAGCTACGCCAAGGGCGG
TGCTTTCTTTGCCGCTATCGCGCCGGAACTCCGTCCCCGTCCCGCCCATT
TTGGTCCCTGGAAGATGTCCGTGGGTACGGCGATCCTCTTTAGCATGTTT
TCCACCTCCTACATGGCGCACACGAACGCGGTCAAGTTCTATAACGAGCT
CGAGGGCCGCAGCGTCCGTCGTTTTTggcaggtggtggcgggggcgaTGG
GGTCCGCCACCGTCATCTACCTGGCCGCGATGACGCTCGGCTTTGAAACC
TTTGGCTTGGCTTCGCAGGGTCTGGTCCTGAACAACTACCACGTCTCCCA
AGACGTGTTGGCCACCATGGGCCGGATCGCGACTGCCGTCTCGATCATCG
GGGCACATCCCCTGCTCTTTAGCGGCTTGCGCGACTCTTTTTTGAGCATC
TTGCCCCCCAATGTGGTCTCTCGGCCCTCGACCTGGTTGTTGTCCACGAT
TGTCCTCTTAGGCGGGGCTACATGCATCTCGTTGCTCTGCAAGGACGTGG
GTCTCCTCGTCAGCTTGGTGGGGTCCTCCTTGGGCGCGGCCATCGTCTAc
gtcttcccgcctttcaTGTACCTTCACCTTCTAAGGCGGCGCAAGGACAT
TCATACCTCAAGAGGGGAAATCCTTCTGCTGCACGCCACAATCCTCTTCG
GTGTAGTGAGCGGTTGCTTCGGGACATGGGTGGCTCTTacaggcggtggg
ggagggaagtaa
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Synonyms
Publications