EWM22604.1, cds8065 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22604.1 vs. NCBI_GenBank
Match: gi|585103167|gb|EWM22604.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 556.214 bits (1432), Expect = 0.000e+0 Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0
Query: 1 MVQQRFEGKVVLVTGGGAGIGTGICKRFHAEGAKVWIVDTNREGAEAAAAALNQVDNGKEHARRAVTAIVDISQETAVSALLDQIEVTDGRLDVLVNNAARFVLKSAEMAEERDWDNVLASNVKGYGLVSKHAIRVMKATKTRGSSTEASGCSIINLGSISSFVGQPGMCTYSATKAAVLALTRCTAIDCGPYGIRVNAVCPGPILTEATKRHAASQGKSMEEMVSELTGHMIQHRMGTPAEIAAVVAFMASEDASFVSGASLLVDGGYSAL 272
MVQQRFEGKVVLVTGGGAGIGTGICKRFHAEGAKVWIVDTNREGAEAAAAALNQVDNGKEHARRAVTAIVDISQETAVSALLDQIEVTDGRLDVLVNNAARFVLKSAEMAEERDWDNVLASNVKGYGLVSKHAIRVMKATKTRGSSTEASGCSIINLGSISSFVGQPGMCTYSATKAAVLALTRCTAIDCGPYGIRVNAVCPGPILTEATKRHAASQGKSMEEMVSELTGHMIQHRMGTPAEIAAVVAFMASEDASFVSGASLLVDGGYSAL
Sbjct: 1 MVQQRFEGKVVLVTGGGAGIGTGICKRFHAEGAKVWIVDTNREGAEAAAAALNQVDNGKEHARRAVTAIVDISQETAVSALLDQIEVTDGRLDVLVNNAARFVLKSAEMAEERDWDNVLASNVKGYGLVSKHAIRVMKATKTRGSSTEASGCSIINLGSISSFVGQPGMCTYSATKAAVLALTRCTAIDCGPYGIRVNAVCPGPILTEATKRHAASQGKSMEEMVSELTGHMIQHRMGTPAEIAAVVAFMASEDASFVSGASLLVDGGYSAL 272
BLAST of EWM22604.1 vs. NCBI_GenBank
Match: gi|545359400|ref|XP_005645179.1| (short-chain dehydrogenase/reductase SDR [Coccomyxa subellipsoidea C-169] >gi|384247148|gb|EIE20635.1| short-chain dehydrogenase/reductase SDR [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 228.409 bits (581), Expect = 3.446e-71 Identity = 124/269 (46.10%), Postives = 164/269 (60.97%), Query Frame = 0
Query: 4 QRFEGKVVLVTGGGAGIGTGICKRFHAEGAKVWIVDTNREGAEAAAAALNQVDNGKEHARRAVTAIVDISQETAVSALLDQIEVTDGRLDVLVNNAARFVLKSAEMAEERDWDNVLASNVKGYGLVSKHAIRVMKATKTRGSSTEASGCSIINLGSISSFVGQPGMCTYSATKAAVLALTRCTAIDCGPYGIRVNAVCPGPILTEATKRHAASQGKSMEEMVSELTGHMIQHRMGTPAEIAAVVAFMASEDASFVSGASLLVDGGYSAL 272
+ G + +VTG G GIG I +R EG V D + E A+ AAA + + VD+S+E V+ L+ + R+D+ VNNAARFV A E DW+ L +NVKGY KHA M A + SG +I+N+ S S+FV QP YS TK AVL LTRC+A+D GP+GIRVNAVCPGPILT+ T RHAAS KS EE+ +E+T +I RMG P E+A+ VAF+AS++ASF++G +L+VDGG +AL
Sbjct: 2 KNLRGMIAIVTGAGNGIGKAIAERLVDEGCGVMWADVDGEAAQQAAAYC------PPNCLQGFPCKVDMSKEKEVANLIQATLMRFSRVDIFVNNAARFVFGHASEVTEEDWERALGTNVKGYAWGIKHASLAMMA--------QGSG-AIVNVASTSAFVAQPSFVPYSTTKGAVLQLTRCSALDLGPHGIRVNAVCPGPILTDGTARHAASVSKSTEELCNEMTAPLILKRMGKPDEVASAVAFLASDEASFITGTTLIVDGGLTAL 255
BLAST of EWM22604.1 vs. NCBI_GenBank
Match: gi|501601020|ref|WP_012599608.1| (short-chain dehydrogenase/reductase SDR [Cyanothece sp. PCC 7424] >gi|218175372|gb|ACK74103.1| short-chain dehydrogenase/reductase SDR (plasmid) [Cyanothece sp. PCC 7424]) HSP 1 Score: 203.756 bits (517), Expect = 1.618e-61 Identity = 109/267 (40.82%), Postives = 153/267 (57.30%), Query Frame = 0
Query: 5 RFEGKVVLVTGGGAGIGTGICKRFHAEGAKVWIVDTNREGAEAAAAALNQVDNGKEHARRAVTAIVDISQETAVSALLDQIEVTDGRLDVLVNNAARFVLKSAEMAEERDWDNVLASNVKGYGLVSKHAIRVMKATKTRGSSTEASGCSIINLGSISSFVGQPGMCTYSATKAAVLALTRCTAIDCGPYGIRVNAVCPGPILTEATKRHAASQGKSMEEMVSELTGHMIQHRMGTPAEIAAVVAFMASEDASFVSGASLLVDGGYSA 271
R K+ L+TGGG+GIG K F ++GA V + D + +G +A + Q A+ + DISQE V ++ + T G +D+LVNNAA FV + E DWD +L+ NVKGY +K+A +M+ RG G SI+NLGSISS + Q Y+ +K A+L +TRC A D P IRVN VCPG I T A R A S+ + EE + + + R+G P E+A + F+AS +ASF++G SL+VDGGY+A
Sbjct: 2 RLANKIALITGGGSGIGAATAKLFASQGASVALADIDEQGGQAVVTEIRQ------SLGEALFHLCDISQEQQVKQWIETVAQTWGGVDILVNNAATFVFGNVEEVSGEDWDKILSVNVKGYAFCAKYAAPLMR---QRG------GGSIVNLGSISSVIAQKSFVPYNTSKGAILQMTRCLAYDLAPDNIRVNCVCPGTIDTPAIWRDAGSKNLTQEEFIEQAAQQHLLGRIGQPIEVAHAILFLASSEASFITGTSLMVDGGYTA 253
BLAST of EWM22604.1 vs. NCBI_GenBank
Match: gi|1082885883|gb|OGB95370.1| (short-chain dehydrogenase [candidate division NC10 bacterium RIFCSPLOWO2_02_FULL_66_22]) HSP 1 Score: 203.371 bits (516), Expect = 2.188e-61 Identity = 116/270 (42.96%), Postives = 154/270 (57.04%), Query Frame = 0
Query: 2 VQQRFEGKVVLVTGGGAGIGTGICKRFHAEGAKVWIVDTNREGAEAAAAALNQVDNGKEHARRAVTAIVDISQETAVSALLDQIEVTDGRLDVLVNNAARFVLKSAEMAEERDWDNVLASNVKGYGLVSKHAIRVMKATKTRGSSTEASGCSIINLGSISSFVGQPGMCTYSATKAAVLALTRCTAIDCGPYGIRVNAVCPGPILTEATKRHAASQGKSMEEMVSELTGHMIQHRMGTPAEIAAVVAFMASEDASFVSGASLLVDGGYSA 271
+ R +GKV +VTGG AGIG F EGAKV I D + AA + V + A+ DIS+E D+ GRL +LVNNAA F+LK E A DW L NV G L+S++A +K A G +I+NLGSISSF+ QP YSATKAA++ +TR A+D P+ IRVN VCPG ILT+A RH G ++EE ++E + R+G P E+A + F+AS +ASF++GA L+VDGGY+A
Sbjct: 1 MSDRLKGKVAIVTGGAAGIGEATAVLFAEEGAKVVIADVDE------AAGMETVARIRAQGGEAIFVSTDISREGDARKACDEAVRAFGRLHILVNNAANFMLKGLE-ASIDDWHRSLGVNVIGTALISRYAAEAIK---------NAGGGAIVNLGSISSFIAQPSFVAYSATKAALVQMTRNMAMDLAPFNIRVNCVCPGTILTQAVHRHVERVGMTLEEFLTEERPKYLLSRIGEPREVAYAILFLASNEASFITGAHLMVDGGYTA 254
BLAST of EWM22604.1 vs. NCBI_GenBank
Match: gi|1082710793|gb|OGA31783.1| (short-chain dehydrogenase [Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b]) HSP 1 Score: 202.986 bits (515), Expect = 3.564e-61 Identity = 116/270 (42.96%), Postives = 154/270 (57.04%), Query Frame = 0
Query: 2 VQQRFEGKVVLVTGGGAGIGTGICKRFHAEGAKVWIVDTNREGAEAAAAALNQVDNGKEHARRAVTAIVDISQETAVSALLDQIEVTDGRLDVLVNNAARFVLKSAEMAEERDWDNVLASNVKGYGLVSKHAIRVMKATKTRGSSTEASGCSIINLGSISSFVGQPGMCTYSATKAAVLALTRCTAIDCGPYGIRVNAVCPGPILTEATKRHAASQGKSMEEMVSELTGHMIQHRMGTPAEIAAVVAFMASEDASFVSGASLLVDGGYSA 271
+ R +GKV +VTGG AGIG F EGAKV I D + AA + V + A+ DIS+E D+ GRL +LVNNAA F+LK E A DW L NV G L+S++A +K A G +I+NLGSISSF+ QP YSATKAA++ +TR A+D P+ IRVN VCPG ILT+A RH G ++EE ++E + R+G P E+A + F+AS +ASF++GA L+VDGGY+A
Sbjct: 1 MSDRLKGKVAIVTGGAAGIGEATAVLFAEEGAKVVIADVDE------AAGMETVARIRAQGGEAIFVSTDISREGDARKACDEAVRAFGRLHILVNNAANFMLKGLE-ASIDDWHRSLGVNVIGTALISRYAAEAIK---------NAGGGAIVNLGSISSFIAQPSFVAYSATKAALVQMTRNMAMDLAPFNIRVNCVCPGTILTQAVHRHVERVGVTLEEFLTEERPKYLLSRIGEPREVAYAILFLASNEASFITGAHLMVDGGYTA 254
BLAST of EWM22604.1 vs. NCBI_GenBank
Match: gi|1133966358|ref|WP_076338269.1| (hypothetical protein [Paenibacillus sp. FSL H8-0548] >gi|1133237163|gb|OMF26520.1| hypothetical protein BK133_20410 [Paenibacillus sp. FSL H8-0548]) HSP 1 Score: 202.216 bits (513), Expect = 6.921e-61 Identity = 112/267 (41.95%), Postives = 159/267 (59.55%), Query Frame = 0
Query: 6 FEGKVVLVTGGGAGIGTGICKRFHAEGAKVWIVDTNREGAEAAAAALNQVDNGKEHARRAVTAIVDISQETAVSALLDQIEVTDGRLDVLVNNAARFVLKSAEMAEERDWDNVLASNVKGYGLVSKHAIRVMKATKTRGSSTEASGCSIINLGSISSFVGQPGMCTYSATKAAVLALTRCTAIDCGPYGIRVNAVCPGPILTEATKRHAASQGKSMEEMVSELTGHMIQHRMGTPAEIAAVVAFMASEDASFVSGASLLVDGGYSAL 272
+GK+ LVTGG G+G I +R EG VW+ D N G E A+ + N ++ + +DIS++ V AL Q+ L +LVNNAA FV K E AE DWD +L N+KG L++ + ++K +A G SIINL S+S FVGQ TY+ATK A+ LT+C A+D +GIRVNA+CPG I TEA ++ GK ++E ++ I R G P+E+A+ AF+AS+DASF++G+ LLVDGG++A+
Sbjct: 4 LKGKIALVTGGAQGLGEAIVRRLSEEGCTVWLGDRNEAGREVASQITSVTGNPVKYVQ------IDISKKQQVEALAQQMTDAGDGLHILVNNAASFVFKGVE-AECEDWDTILDVNLKGTSLLTGAMVPLLK---------QAQGASIINLSSVSGFVGQAQFATYNATKFALRGLTKCWAVDLASHGIRVNALCPGYIRTEAFEQSCRLLGKDIDEEDRRVSALHILGRQGVPSEVASAAAFLASDDASFITGSDLLVDGGFTAI 254
BLAST of EWM22604.1 vs. NCBI_GenBank
Match: gi|1099892819|emb|SFB29426.1| (NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Cohnella sp. OV330]) HSP 1 Score: 198.364 bits (503), Expect = 2.372e-59 Identity = 115/267 (43.07%), Postives = 158/267 (59.18%), Query Frame = 0
Query: 6 FEGKVVLVTGGGAGIGTGICKRFHAEGAKVWIVDTNREGAEAAAAALNQVDNGKEHARRAVTAIVDISQETAVSALLDQI-EVTDGRLDVLVNNAARFVLKSAEMAEERDWDNVLASNVKGYGLVSKHAIRVMKATKTRGSSTEASGCSIINLGSISSFVGQPGMCTYSATKAAVLALTRCTAIDCGPYGIRVNAVCPGPILTEATKRHAASQGKSMEEMVSELTGHMIQHRMGTPAEIAAVVAFMASEDASFVSGASLLVDGGYSA 271
+GK +VTGG G+G I +R EG KVWI D R+G E A + + Q + +A DI+ E + A ++ EV+DG +D+LVNNAARF+LK + A ++W +L NV G LV++H + +MK T SI+NL S+S FVGQ TY+ATK A+ LT+C AID P+ IRVN+VCPG I TEA + G EE + ++ I R GT E++ VVAF+AS+DASF++G L+VDGGY A
Sbjct: 4 LKGKTAVVTGGAQGLGKAIARRLSEEGCKVWIFDLKRDGEETATS-IQQATGNPVYFVQA-----DIAVEQQIEAAFRRVAEVSDG-VDILVNNAARFILKGID-ATSQEWRAILDVNVIGTSLVTQHCLPLMKKT---------GAGSIVNLSSVSGFVGQSSFATYNATKFAIRGLTKCWAIDLSPFHIRVNSVCPGYIRTEAFENSCVQLGIDPEEENARISQLHILGRQGTAEEVSGVVAFVASDDASFITGEDLMVDGGYLA 253
BLAST of EWM22604.1 vs. NCBI_GenBank
Match: gi|1125148813|gb|OLB05531.1| (short-chain dehydrogenase [Gemmatimonadetes bacterium 13_2_20CM_69_27] >gi|1125195971|gb|OLB48815.1| short-chain dehydrogenase [Gemmatimonadetes bacterium 13_2_20CM_2_69_23] >gi|1125430927|gb|OLD60061.1| short-chain dehydrogenase [Gemmatimonadetes bacterium 13_1_20CM_69_28]) HSP 1 Score: 194.126 bits (492), Expect = 8.584e-58 Identity = 111/268 (41.42%), Postives = 158/268 (58.96%), Query Frame = 0
Query: 5 RFEGKVVLVTGGGAGIGTGICKRFHAEGAKVWIVDTNREGAEAAAAALNQVDNGKEHARRAVTAIVDISQETAVSALLDQIEVTDGRLDVLVNNAARFVLKSAEMAEERDWDNVLASNVKGYGLVSKHAIRVMKATKTRGSSTEASGCSIINLGSISSFVGQPGMCTYSATKAAVLALTRCTAIDCGPYGIRVNAVCPGPILTEATKRHAASQGKSMEEMVSELTGHMIQHRMGTPAEIAAVVAFMASEDASFVSGASLLVDGGYSAL 272
R GK +VTGGGAGIG + F EG +V + D + + E +AA++ + RA+ D+S+E V + D G++DVLVN+AA FVLK + + E +W L NV G L ++A MK RG+ I+NL SIS+F+ QP TYSATKAA++ +TR A+D P+GIRVN VCP ILT A+ RH G+S+ E V+E + R+G P E+A + F+AS++ASF++G L+VDGGY+A+
Sbjct: 2 RMTGKTAIVTGGGAGIGEATVQLFAEEGGQVLVADVDEQAGETSAASV------RASRGRAIFVKTDVSKEEDVRRMRDACVREFGKIDVLVNSAATFVLKGVDASVE-EWRRSLDVNVIGTCLCVRYAAEEMKKLG-RGA--------IVNLSSISAFIAQPNFTTYSATKAAIVQMTRNMALDLAPHGIRVNCVCPATILTSASHRHMERVGQSLAEFVAEQGPLHLLRRVGQPREVAYPILFLASDEASFITGTHLMVDGGYTAV 253
BLAST of EWM22604.1 vs. NCBI_GenBank
Match: gi|926790245|ref|XP_013903596.1| (short-chain dehydrogenase/reductase SDR [Monoraphidium neglectum] >gi|761974488|gb|KIZ04577.1| short-chain dehydrogenase/reductase SDR [Monoraphidium neglectum]) HSP 1 Score: 190.274 bits (482), Expect = 2.710e-57 Identity = 97/172 (56.40%), Postives = 122/172 (70.93%), Query Frame = 0
Query: 101 RFVLKSAEMAEERDWDNVLASNVKGYGLVSKHAIRVMKATKTRGSSTEASGCSIINLGSISSFVGQPGMCTYSATKAAVLALTRCTAIDCGPYGIRVNAVCPGPILTEATKRHAASQGKSMEEMVSELTGHMIQHRMGTPAEIAAVVAFMASEDASFVSGASLLVDGGYSAL 272
RFV SA E D D A+NVKGY KHA R +KA RG G SI+NL SISSF+ QPG YSA+K A+L LTRC A+D G +GIRVNAVCPGPILTEAT++HA SQGK+ +++++E+ G +I RMG+P E+A VAF+ S DASF++GA L+VDGG +AL
Sbjct: 9 RFVFSSALDVTEADLDLSFATNVKGYTFCIKHAGRAIKAAG-RG------GGSIVNLASISSFIAQPGFVPYSASKGAILQLTRCCALDLGQHGIRVNAVCPGPILTEATEKHAHSQGKAPDQIMNEMKGGLIIQRMGSPDEVAGAVAFLLSSDASFITGAVLMVDGGMTAL 173
BLAST of EWM22604.1 vs. NCBI_GenBank
Match: gi|1197822487|ref|WP_086757732.1| (MULTISPECIES: short-chain dehydrogenase [Nostoc] >gi|1195998095|gb|OUL20480.1| short-chain dehydrogenase [Nostoc sp. RF31Y] >gi|1196012338|gb|OUL34303.1| short-chain dehydrogenase [Nostoc sp. 106C]) HSP 1 Score: 191.43 bits (485), Expect = 1.177e-56 Identity = 110/267 (41.20%), Postives = 150/267 (56.18%), Query Frame = 0
Query: 5 RFEGKVVLVTGGGAGIGTGICKRFHAEGAKVWIVDTNREGAEAAAAALNQVDNGKEHARRAVTAIVDISQETAVSALLDQIEVTDGRLDVLVNNAARFVLKSAEMAEERDWDNVLASNVKGYGLVSKHAIRVMKATKTRGSSTEASGCSIINLGSISSFVGQPGMCTYSATKAAVLALTRCTAIDCGPYGIRVNAVCPGPILTEATKRHAASQGKSMEEMVSELTGHMIQHRMGTPAEIAAVVAFMASEDASFVSGASLLVDGGYSA 271
+ K+ L+TG +GIG K F +EGAKV I D + G + +D K A+ VD+S E+ V + + G +D+LV NAA V+ + E A E DWD VLA NVKGY +K+ V + RG G +I+NL SISSFV P Y+ +K A+L LTR A D P IRVN VCPGPI T A ++ A S G S E++V + ++ RMG P E+A + F+AS+ ASF++G L+VDGGY+A
Sbjct: 2 QLANKIALITGASSGIGRETAKLFASEGAKVAIADVDTVGGQ------TLIDEIKAFGGTALFHQVDVSVESEVQNWVAGVVHEWGGVDILVANAAVMVIGTVEQATELDWDRVLAVNVKGYAFCAKY---VTPQMRQRG------GGAIVNLASISSFVAVPAFAPYNTSKGAILQLTRSLAYDLAPDNIRVNCVCPGPIYTPAVQKVANSLGLSDEDIVKQFAPLILLKRMGKPQEVANAILFLASDKASFITGTPLMVDGGYTA 253 The following BLAST results are available for this feature:
BLAST of EWM22604.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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