rna8087, rna8087 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8087
Unique Name	rna8087
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1215
Alignment location	KK037247.1:533875..535790 -

Link to JBrowse

Properties


Property Name	Value
Product	short-chain dehydrogenase reductase sdr
Orig transcript id	gnl\|cribi\|Naga_100126g17.3030.mrna
Orig protein id	gnl\|cribi\|Naga_100126g17.3030
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:533875..535790 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100126g17	gene7831	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8087	rna8087-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22604.1	cds8065	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:533875..535790-
coding sequence from alignment at KK037247.1:533875..535790-

mRNA sequence

>rna8087 ID=rna8087|Name=rna8087|organism=Nannochloropsis gaditana|type=mRNA|length=1215bp
TGAAGCAGCTTATGTTATAGGAAAGGGACGGTCCAGCTCTCCTCCGCCCC
TCCATCACCAGCTTTCCTTTTTCTTTTTGCTTTTTGCGCCTTTTCGCTTT
CTACCAACTGCCGACAACAAGCGTTTTTTCTGGATGAGTGGTATTCTGCG
TCTTGGTTTCCGTTGCGGATATTGCCTCTCGTACTTTCAAGGCCCTGCCC
TTGACACGGTAGTATAAGAAAATTTATGTTTCAAAGATCTCAACGTTAAA
GTCAAATGGGCAATCCAAATACATCGGGTCTCAGTTTTGGTACCATTTAT
GGCTTGTCTTGCCTGTCGGCGTGCGTGGCTGAAACCGTGACCTTCCCCTT
GGACCTGTTCAAGACGCTTCTACAGGCGGAGAGGATAAGTAGGGGAGAGC
GCGCCACCCACCAAGCCTATCGGAGTCTCGTCCTCAGTATATTCAAGGAG
GCCGTGGCAAAGGAACAGGGGGGATACATGAATTTATGGCGGGGATTGAC
GCCGGCCTGTCTCCGGCACATTGTCTATTCCGGGTCGCGCCTGGGTCTGT
ATGAATTTTGGCGCGAAGACGTTCTGGGACGGGACGCAGACGGCAGCTTT
CCCCTTCACAAGGCCGTAGCCGCAGGGATGCTTTCGGGGGCGATTGGTCA
ATTTTTCTCTTCCCCCGCCGACGTGGTCAAGGTCCGGATGCAAACGGAAG
TAGGCCGTCGCCGCGCGGGCCTCCCTCCTCTCTATCGCTCCACCCGCGAG
GCCTTCGTGGCGATTTTCAGGGAGGGTGGGCTACGCGGGCTTTGGCGAGG
ATGGGTACCGAATTGCCAACGCGCAGCACTCGTGCAGCTTGGGGATTTGA
CTACCTACGACTGTACCAAACAGTACCTCCTGCGGGATCAGAAGGAGGGC
GGATGGGCCTTGGAGGATAACGCGCGGACGCATGCCTGTGCCTCGCTGGC
TGCTGGCTTGGTGGCAGCTTTCCTGGGGACGCCCGCGGACGTGGTCAAGA
CGCGCTGTATGAACCAGCCCTGCGACGCGGTCACGGGGAAAGGCTTGTTG
TACCGGTCGTCTTTCGACTGCCTGCGGAGCGTGGTCCGGGACGAAGGGTA
CCAGGCGCTCTGGCGAGGCTGTTTTCTGAACTGGCTGCGGATGGCCCCCT
GGTCTCTGGCGTTTTACTTGTCTTTCGAGCACCTGAGGCGCATGTCGGGC
CTTCGTTCCTTCTGA

protein sequence of rna8087

>rna8087-protein ID=rna8087-protein|Name=rna8087|organism=Nannochloropsis gaditana|type=polypeptide|length=272bp
MVQQRFEGKVVLVTGGGAGIGTGICKRFHAEGAKVWIVDTNREGAEAAAA
ALNQVDNGKEHARRAVTAIVDISQETAVSALLDQIEVTDGRLDVLVNNAA
RFVLKSAEMAEERDWDNVLASNVKGYGLVSKHAIRVMKATKTRGSSTEAS
GCSIINLGSISSFVGQPGMCTYSATKAAVLALTRCTAIDCGPYGIRVNAV
CPGPILTEATKRHAASQGKSMEEMVSELTGHMIQHRMGTPAEIAAVVAFM
ASEDASFVSGASLLVDGGYSAL

mRNA from alignment at KK037247.1:533875..535790-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8087 ID=rna8087|Name=rna8087|organism=Nannochloropsis gaditana|type=mRNA|length=1916bp|location=Sequence derived from alignment at KK037247.1:533875..535790- (Nannochloropsis gaditana)
GAACGACGCGATTTGCAGTGATAAAGAACGAGGACAGAGGGTGCAGGTAT
CAAGTCAGGAGCTTGCTCCTCTGGCCGGCTACACTTGATCCGACACGGGG
GCGAATTGGAACACCCCAACAAGTCCAAGAATTATGCCAGGCCTGCCCTA
GATTCGCATAAGAGAAGAAGTGTAAGCCGTGTAGGGATGTTTCGGAAGAC
ATTGAGCGGCGCGCCACGTCCGAGTAGAAAGACATGTGCCGGCAGGAAAG
ATCGACAAGGCAGAGGCATCTCACTACGACCCCAAGTCAAATGCCATATT
AAAGCCTGCCCTGGCTCGCTGGTCTTCCTCAACCCCGTCACCCAAAAAAC
ATCTTCCGCAATAAATATGATCCGCTTTGAGTACGTGTGGTTTGGGATAC
TGGGGAGCATCCTCATTCATTTATTCAGCCAGGACGCAGGGTAACCATCT
CGAGTAGTGCTGCCTTCAACAGGTAGATCGTGACAGCCTGCTATGACAGA
AACCTCGCTTTTTTTTCCTTCCACGCGATAGAATTCACACGATTTCATAA
GAATATTCACGCCTGATACAGGAAGAATGGTGCAGCAGCGCTTTGAGGGC
AAGGTTGTGCTTGTTACAGGTAAGCATCTGAAAGCACGAGCCAGCGTCCG
TTGCGTAGCCTATCTCTTGCTGAGCTCATGTAAGTCTTTCCCACTCAACA
TCACCATCATCACAGGCGGAGGGGCCGGTATTGGGACAGGTATTTGTAAG
CGATTTCACGCCGAGGGCGCCAAAGTATGGATTGTTGACACGAATCGAGA
GGGAGCCGAGGCTGCGGCGGCGGCGCTCAATCAAGTGGACAATGGCAAGG
AGCACGCACGCCGGGCTGTCACAGCCATTGTCGACATCTCTCAAGAAACT
GCTGTAAGTGCATTGCTGGATCAAATCGAAGTCACCGATGGGAGATTGGA
CGTACTGGTGAACAATGCAGCGCGATTCGTCTTGAAGAGCGCTGAAATGG
CGGAGGAGAGGGACTGGGACAACGTCCTGGCCAGCAATGTTAAGGGCTAC
GGACTCGTCTCGAAACATGCCATTCGCGTCATGAAAGCCACCAAGACGCG
AGGAAGCTCGACCGAGGCGTGTAAGTGTTTGCGAGGAGGGGTATCACTGA
GCACGGACCAGTTCGCATCTTGATCTCGCCTCCCACCGATCGATCTCCTA
TCCGAGCAGCGGGATGCTCCATCATCAACCTCGGTTCCATTTCCTCCTTT
GTCGGACAACCGGGCATGTGCACCTACAGTGCCACAAAAGCTGCCGTCCT
CGCTCTCACGCGCTGCACTGCCATTGATTGCGGGCCCTACGGGATTCGAG
TGAACGCCGTCTGCCCCGGCCCCATTCTCACAGAGGCGACAAAGCGGCAT
GCCGCAAGCCAAGTAAGCAAAGGGAACGGATAGAATCATCATGCATAGCA
GTCGTAGTAGTGCGGTGAAGGAGTGTGGCAGTTTTTGCAGATTGGCTACG
TGAATTTGTCTTCTTTTCCATCATATGCTTTCTAAGGCCAACGACCTTCA
TAACAGGGCAAAAGCATGGAGGAAATGGTCTCCGAATTGACGGGTCACAT
GATACAGCATCGAATGGGTACTCCTGCGGAAATAGCGGCTGTTGTTGCCT
TCATGGCCAGCGAGGATGCTAGTTTTGTTTCGGGCGCCTCCCTCTTAGTG
GACGGGGGGTACTCGGCTCTGTAATCTGCCACAGGAGTCCCCGGAGGAAG
GGAAAATATGGACTGAAAACCCACGAGGCCAGACGACAGGCTGTAGCTAT
ATGAGAAAAGAACATTGATATTGAATTGATTTCATACATTGTTTTCGGAA
GTGTGGTTGGTCTACATTTCCGAATGACGCCAAATGGGCCGCGAATAACC
TCCTCACATGTTCCCC

Coding sequence (CDS) from alignment at KK037247.1:533875..535790-

>rna8087 ID=rna8087|Name=rna8087|organism=Nannochloropsis gaditana|type=CDS|length=3276bp|location=Sequence derived from alignment at KK037247.1:533875..535790- (Nannochloropsis gaditana)
GGCAAAAGCATGGAGGAAATGGTCTCCGAATTGACGGGTCACATGATACA
GCATCGAATGGGTACTCCTGCGGAAATAGCGGCTGTTGTTGCCTTCATGG
CCAGCGAGGATGCTAGTTTTGTTTCGGGCGCCTCCCTCTTAGTGGACGGG
GGGTACTCGGCTCTGTAACGGGATGCTCCATCATCAACCTCGGTTCCATT
TCCTCCTTTGTCGGACAACCGGGCATGTGCACCTACAGTGCCACAAAAGC
TGCCGTCCTCGCTCTCACGCGCTGCACTGCCATTGATTGCGGGCCCTACG
GGATTCGAGTGAACGCCGTCTGCCCCGGCCCCATTCTCACAGAGGCGACA
AAGCGGCATGCCGCAAGCCAAGCGGAGGGGCCGGTATTGGGACAGGTATT
TGTAAGCGATTTCACGCCGAGGGCGCCAAAGTATGGATTGTTGACACGAA
TCGAGAGGGAGCCGAGGCTGCGGCGGCGGCGCTCAATCAAGTGGACAATG
GCAAGGAGCACGCACGCCGGGCTGTCACAGCCATTGTCGACATCTCTCAA
GAAACTGCTGTAAGTGCATTGCTGGATCAAATCGAAGTCACCGATGGGAG
ATTGGACGTACTGGTGAACAATGCAGCGCGATTCGTCTTGAAGAGCGCTG
AAATGGCGGAGGAGAGGGACTGGGACAACGTCCTGGCCAGCAATGTTAAG
GGCTACGGACTCGTCTCGAAACATGCCATTCGCGTCATGAAAGCCACCAA
GACGCGAGGAAGCTCGACCGAGGCGTATGGTGCAGCAGCGCTTTGAGGGC
AAGGTTGTGCTTGTTACAGGGCAAAAGCATGGAGGAAATGGTCTCCGAAT
TGACGGGTCACATGATACAGCATCGAATGGGTACTCCTGCGGAAATAGCG
GCTGTTGTTGCCTTCATGGCCAGCGAGGATGCTAGTTTTGTTTCGGGCGC
CTCCCTCTTAGTGGACGGGGGGTACTCGGCTCTGTAACGGGATGCTCCAT
CATCAACCTCGGTTCCATTTCCTCCTTTGTCGGACAACCGGGCATGTGCA
CCTACAGTGCCACAAAAGCTGCCGTCCTCGCTCTCACGCGCTGCACTGCC
ATTGATTGCGGGCCCTACGGGATTCGAGTGAACGCCGTCTGCCCCGGCCC
CATTCTCACAGAGGCGACAAAGCGGCATGCCGCAAGCCAAGCGGAGGGGC
CGGTATTGGGACAGGTATTTGTAAGCGATTTCACGCCGAGGGCGCCAAAG
TATGGATTGTTGACACGAATCGAGAGGGAGCCGAGGCTGCGGCGGCGGCG
CTCAATCAAGTGGACAATGGCAAGGAGCACGCACGCCGGGCTGTCACAGC
CATTGTCGACATCTCTCAAGAAACTGCTGTAAGTGCATTGCTGGATCAAA
TCGAAGTCACCGATGGGAGATTGGACGTACTGGTGAACAATGCAGCGCGA
TTCGTCTTGAAGAGCGCTGAAATGGCGGAGGAGAGGGACTGGGACAACGT
CCTGGCCAGCAATGTTAAGGGCTACGGACTCGTCTCGAAACATGCCATTC
GCGTCATGAAAGCCACCAAGACGCGAGGAAGCTCGACCGAGGCGTATGGT
GCAGCAGCGCTTTGAGGGCAAGGTTGTGCTTGTTACAGGGCAAAAGCATG
GAGGAAATGGTCTCCGAATTGACGGGTCACATGATACAGCATCGAATGGG
TACTCCTGCGGAAATAGCGGCTGTTGTTGCCTTCATGGCCAGCGAGGATG
CTAGTTTTGTTTCGGGCGCCTCCCTCTTAGTGGACGGGGGGTACTCGGCT
CTGTAACGGGATGCTCCATCATCAACCTCGGTTCCATTTCCTCCTTTGTC
GGACAACCGGGCATGTGCACCTACAGTGCCACAAAAGCTGCCGTCCTCGC
TCTCACGCGCTGCACTGCCATTGATTGCGGGCCCTACGGGATTCGAGTGA
ACGCCGTCTGCCCCGGCCCCATTCTCACAGAGGCGACAAAGCGGCATGCC
GCAAGCCAAGCGGAGGGGCCGGTATTGGGACAGGTATTTGTAAGCGATTT
CACGCCGAGGGCGCCAAAGTATGGATTGTTGACACGAATCGAGAGGGAGC
CGAGGCTGCGGCGGCGGCGCTCAATCAAGTGGACAATGGCAAGGAGCACG
CACGCCGGGCTGTCACAGCCATTGTCGACATCTCTCAAGAAACTGCTGTA
AGTGCATTGCTGGATCAAATCGAAGTCACCGATGGGAGATTGGACGTACT
GGTGAACAATGCAGCGCGATTCGTCTTGAAGAGCGCTGAAATGGCGGAGG
AGAGGGACTGGGACAACGTCCTGGCCAGCAATGTTAAGGGCTACGGACTC
GTCTCGAAACATGCCATTCGCGTCATGAAAGCCACCAAGACGCGAGGAAG
CTCGACCGAGGCGTATGGTGCAGCAGCGCTTTGAGGGCAAGGTTGTGCTT
GTTACAGGGCAAAAGCATGGAGGAAATGGTCTCCGAATTGACGGGTCACA
TGATACAGCATCGAATGGGTACTCCTGCGGAAATAGCGGCTGTTGTTGCC
TTCATGGCCAGCGAGGATGCTAGTTTTGTTTCGGGCGCCTCCCTCTTAGT
GGACGGGGGGTACTCGGCTCTGTAACGGGATGCTCCATCATCAACCTCGG
TTCCATTTCCTCCTTTGTCGGACAACCGGGCATGTGCACCTACAGTGCCA
CAAAAGCTGCCGTCCTCGCTCTCACGCGCTGCACTGCCATTGATTGCGGG
CCCTACGGGATTCGAGTGAACGCCGTCTGCCCCGGCCCCATTCTCACAGA
GGCGACAAAGCGGCATGCCGCAAGCCAAGCGGAGGGGCCGGTATTGGGAC
AGGTATTTGTAAGCGATTTCACGCCGAGGGCGCCAAAGTATGGATTGTTG
ACACGAATCGAGAGGGAGCCGAGGCTGCGGCGGCGGCGCTCAATCAAGTG
GACAATGGCAAGGAGCACGCACGCCGGGCTGTCACAGCCATTGTCGACAT
CTCTCAAGAAACTGCTGTAAGTGCATTGCTGGATCAAATCGAAGTCACCG
ATGGGAGATTGGACGTACTGGTGAACAATGCAGCGCGATTCGTCTTGAAG
AGCGCTGAAATGGCGGAGGAGAGGGACTGGGACAACGTCCTGGCCAGCAA
TGTTAAGGGCTACGGACTCGTCTCGAAACATGCCATTCGCGTCATGAAAG
CCACCAAGACGCGAGGAAGCTCGACCGAGGCGTATGGTGCAGCAGCGCTT
TGAGGGCAAGGTTGTGCTTGTTACAG

Synonyms

Publications