rna8070, rna8070 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8070
Unique Name	rna8070
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1656
Alignment location	KK037247.1:498399..500312 -

Link to JBrowse

Properties


Property Name	Value
Product	anaphase-promoting complex subunit
Orig transcript id	gnl\|cribi\|Naga_100023g61.3944.mrna
Orig protein id	gnl\|cribi\|Naga_100023g61.3944
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:498399..500312 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100023g61	gene7814	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22628.1	cds8048	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8070	rna8070-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:498399..500312-
coding sequence from alignment at KK037247.1:498399..500312-

mRNA sequence

>rna8070 ID=rna8070|Name=rna8070|organism=Nannochloropsis gaditana|type=mRNA|length=1656bp
ATGCAAATCCTCGATATGCAAATAATAATTTCGACGAGGTATTACAGGGG
TGGGAGGAGAGCTTTCTATTTATTCGGCTTCCTCGGCTGGCGGAGCTTCG
ACATCTACTTGCGCCAAGGCCCAGCCCGCCAGCTCCGACTACAGGGGGGG
AGGATCAGGAAAATAGCAACTGGTAGACGCGACGCATACCGGATGAGTGT
CTGTGATGAGTATCATTCACATAGCTCACCGCCTATGAAGCCTGCTCGCA
TTTTATCCATCCAGTCCCACGTCGTTCACGGCTATGTGGGCAACAAAAGC
GCCGTTTTCCCTCTCCAAGTCCTTGGTCTTGACGTTGATCCTATCAACAG
CGTCCAGTTCTCCAACCACACAGGCTATGATGTCTGCAAGGGCGATGTCT
TGGAGGGGGTCGAGCTCTTAAGACTCGTGGAGGGCCTTGAGGCGAATGGG
CTGTTGTCGGGATACACGCACTTGCTGACAGGCTACATTGGGTCGCCGTC
TTTCCTCCACGCTGTCGTCCAAGTGGCCACCAAGCTAAAAGCCCTCAACC
CGGGCCTGCAGTACGTGTGCGATCCCGTGTTGGGTGACGAGGGCAAGCTC
TATGTGGCCGAGGCTCTGGTAGAGACGTACAAAACCCAAGTGCTTCCCCT
TGCGGACGTGCTCACGCCCAACCAGTTCGAGGCTGAGATTCTGACTGGCA
TCAAGATCCAATCGGAGAGCGACGCGCAAAGGGCATGCCTTTTACTGCAC
GCGCATGGCCCGCGGACCGTGGTGGTGACGAGTGCCGCCTTCCGGGGAGG
TGAAGGATGTCTTCATGTCTTGGGGAGTCAGCGCCATGGGACCTCCTGGA
GGGCCCCCGACATGTGTCGCCTGGTGGTGCCTCGCATCGCCGGGGCCTAC
ACGGGCACGGGGGACTTGACTGCCGCCTTGCTCTTGGCTTGGCTCTACCG
GGACCCCCCCCGAGGACTCCCAGAAGTGCTAGAGAAGGCCATCGCCACCG
TCCAGGCTATTCTGAAGCGGACTTACGAGGAAGGGGGGGGATCCGCCGAG
TTGAGGCTTGTACAGAGCAAGCAGGACATCGAGAGGCCGCGTGTCCAAGT
CACGGCCGAGCGGTTGCGCCAGCCTACGGACATCAAGGGAGTCATTTTCG
ACATGGACGGGACCCTGACCAAGCCCGGTCAGATAGACTTTGGACGCATC
CGATCTCGCCTCAACATCCCTGAGAATGTGGATATACTGACGTACATTGG
ACAAATGTCTTCAGAGGGAGATAGGGTTGCGGCGCTGGCCGTGGTAGAGG
AGGAGGAGTTGCGGGGGTTTATGGACGTGCAGCTCCAGGAGAAGGCGGAG
GAGGTGGTGGCCTGGCTGCGGGGCGAAAGGGGCATGCAAGTCGCATTAGC
CACGCGCAACAACCCCAAGTGCGTGGACGTCCTGGTCGATCGCTGTGCCT
TCCGACTCCCTTGTCATGTAGAGGCCTCGTCCGTAGAGACCCCACCAAAG
GCCTCCTTTCATCCGGTGCTCACACGGGCGTGGAAGAGCGAGGTGGACGT
GGATAAGCTCCTGGACGTGTGCGAACAATGGGGGCTGCCCCCGGAATCCG
TCTTAGTGGTGGGCGACAGTTTAGGTACGTTGATGACAGAACGCAAAGCC
ACATGA

protein sequence of rna8070

>rna8070-protein ID=rna8070-protein|Name=rna8070|organism=Nannochloropsis gaditana|type=polypeptide|length=637bp
MDDETADPGATATYHAEDVRLLHHYIRSLIGQKLYDSADLIGGLLLCCTR
PAIISHSPSMWDLHATSLELYADSLVGKGERYRALSFYQQANAHRKCAAS
SSLRCSPTQLLGLPPTSPPCPPPSLPINFKEARCHLSLNKPSQALRALLS
VSTSTRESSVPVAVTLGHVYRRLGMQHDAQTAYKDAVGHDPLALEALIGL
AKTGMDEEDIWRLVTGPWAPCGGARPEEGARRGVGKGRGGSDEAKGSSSR
RPRGSQAYESVDSRGRLSSDENSVWQVLRTKTLPWLKVWVQAHVALAAQN
WAVAAERFGELEVRYFPKSTHCLLQRARAQVGMDLYMDAQQTFGRAVEGE
GGGEVMEHMDYYAVVLRQRAAKGELAHLAHRLMDVDTRRPEPWIAAALHS
DLKGEKESPLTLVEQAIKTDHEHVLGYQVRGTLLLALGKAEAAASSFLQG
SRLHKDMNGYKGLVDAYLVQHKFKEALGCAKEAFSAMPKSATAITLVGRV
LAQLPEGREKAKRAFQRALSMNPSTVDALLALADLHLGAQEYDKCIHLLS
SSLQNSGHDFLHTKLGEAYAISGDFSKALASFNTAVSMNPSSAPATAGLE
KLEKLLRGVEPEEDGEGEEVDEEVEAEEDDMVEGTTD

mRNA from alignment at KK037247.1:498399..500312-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8070 ID=rna8070|Name=rna8070|organism=Nannochloropsis gaditana|type=mRNA|length=1914bp|location=Sequence derived from alignment at KK037247.1:498399..500312- (Nannochloropsis gaditana)
ATGGACGACGAGACGGCAGACCCGGGTGCGACAGCTACGTACCATGCAGA
GGATGTGCGTCTCCTCCATCACTATATTCGGTCTCTCATCGGACAGAAAC
TGTATGACTCTGCGGATTTGATTGGTGGCTTGCTGCTTTGTTGTACTCGC
CCCGCGATCATCTCTCATAGCCCTTCTATGTGGGACCTCCATGCTACCTC
TCTCGAGCTTTACGCCGATTCCTTGGTTGGGAAAGGTGAACGCTATCGGG
CCCTGTCTTTCTACCAGCAAGCTAATGCCCACCGGAAGTGTGCCGCCTCC
TCTTCCCTACGGTGCTCTCCAACTCAACTGCTCGGCCTTCCCCCCACATC
CCCTCCTTGCCCCCCCCCTTCTCTGCCCATCAACTTCAAAGAGGCTCGCT
GTCATCTCTCCCTCAACAAGCCCTCCCAGGCCTTACGGGCGCTTCTTTCC
GTGTCCACCTCGACAAGAGAATCGTCTGTTCCAGTGGCAGTCACCTTGGG
ACACGTGTACCGCCGCCTCGGAATGCAGCACGACGCTCAGACAGCCTACA
AAGATGCTGTTGGCCATGATCCCCTAGCGTTGGAGGCATTGATTGGACTG
GCGAAGACAGGCATGGACGAGGAGGACATTTGGAGGCTAGTGACCGGGCC
ATGGGCCCCTTGTGGTGGGGCAAGGCCCGAGGAAGGGGCACGGCGAGGGG
TCGGGAAAGGACGAGGAGGAAGCGACGAAGCCAAGGGTAGCTCCTCGCGT
CGACCCAGAGGTAGCCAGGCTTACGAAAGCGTCGACTCCCGGGGGAGGTT
GAGCAGTGATGAAAATAGCGTGTGGCAGGTCCTGCGGACCAAGACGCTGC
CCTGGCTGAAGGTCTGGGTACAAGCACATGTAGCCTTGGCCGCGCAAAAT
TGGGCGGTGGCCGCCGAGCGCTTCGGCGAGTTGGAAGTCCGCTATTTTCC
GAAGTCCACGCATTGCCTGTTGCAGCGAGCACGGGCGCAGGTGGGAATGG
ATCTGTACATGGACGCGCAGCAGACCTTTGGGCGGGCGGTTGAGGGGGAG
GGGGGGGGCGAGGTGATGGAGCACATGGATTATTACGCCGTGGTGCTCCG
GCAGAGGGCTGCAAAGGGGGAGCTGGCTCATTTAGCCCACCGACTGATGG
ATGTGGACACGAGGCGGCCGGAGCCGTGGATCGCAGCGGCCTTGCACAGC
GACCTGAAGGGGGAGAAGGAGAGCCCTTTGACGTTGGTGGAGCAGGCAAT
CAAGACGGATCACGAGCATGTCCTAGGCTACCAGGTACGAGGCACGTTGC
TGCTTGCGTTAGGGAAAGCGGAGGCGGCGGCTTCGTCCTTCCTTCAGGGC
AGTCGGCTCCACAAAGACATGAACGGCTACAAAGGCTTGGTGGACGCCTA
TTTGGTCCAACACAAATTTAAAGAGGCATTAGGGTGTGCAAAGGAAGCCT
TTTCCGCCATGCCAAAGAGCGCCACGGCCATCACCTTGGTGGGTCGCGTC
CTGGCCCAGTTGCCGGAGGGGCGCGAGAAGGCCAAGCGTGCCTTCCAAAG
GGCCCTGAGCATGAACCCGTCCACGGTCGATGCCCTTTTGGCCCTGGCAG
ACTTGCATCTTGGGGCACAGGAATACGATAAATGTATACATCTGTTGTCG
AGTAGTTTGCAAAATAGTGGGCATGATTTCTTGCATACCAAGTTGGGGGA
GGCCTATGCTATCAGTGGAGATTTTTCAAAGGCTCTAGCATCTTTTAACA
CTGCTGTTTCCATGAATCCATCTTCTGCACCAGCCACGGCTGGGCTGGAA
AAACTAGAGAAGCTTTTGCGGGGGGTTGAGCCAGAGGAGGATGGGGAGGG
GGAGGAGGTGGACGAGGAGGTTGAGGCAGAGGAGGATGATATGGTGGAGG
GCACGACAGACTAG

Coding sequence (CDS) from alignment at KK037247.1:498399..500312-

>rna8070 ID=rna8070|Name=rna8070|organism=Nannochloropsis gaditana|type=CDS|length=1914bp|location=Sequence derived from alignment at KK037247.1:498399..500312- (Nannochloropsis gaditana)
ATGGACGACGAGACGGCAGACCCGGGTGCGACAGCTACGTACCATGCAGA
GGATGTGCGTCTCCTCCATCACTATATTCGGTCTCTCATCGGACAGAAAC
TGTATGACTCTGCGGATTTGATTGGTGGCTTGCTGCTTTGTTGTACTCGC
CCCGCGATCATCTCTCATAGCCCTTCTATGTGGGACCTCCATGCTACCTC
TCTCGAGCTTTACGCCGATTCCTTGGTTGGGAAAGGTGAACGCTATCGGG
CCCTGTCTTTCTACCAGCAAGCTAATGCCCACCGGAAGTGTGCCGCCTCC
TCTTCCCTACGGTGCTCTCCAACTCAACTGCTCGGCCTTCCCCCCACATC
CCCTCCTTGCCCCCCCCCTTCTCTGCCCATCAACTTCAAAGAGGCTCGCT
GTCATCTCTCCCTCAACAAGCCCTCCCAGGCCTTACGGGCGCTTCTTTCC
GTGTCCACCTCGACAAGAGAATCGTCTGTTCCAGTGGCAGTCACCTTGGG
ACACGTGTACCGCCGCCTCGGAATGCAGCACGACGCTCAGACAGCCTACA
AAGATGCTGTTGGCCATGATCCCCTAGCGTTGGAGGCATTGATTGGACTG
GCGAAGACAGGCATGGACGAGGAGGACATTTGGAGGCTAGTGACCGGGCC
ATGGGCCCCTTGTGGTGGGGCAAGGCCCGAGGAAGGGGCACGGCGAGGGG
TCGGGAAAGGACGAGGAGGAAGCGACGAAGCCAAGGGTAGCTCCTCGCGT
CGACCCAGAGGTAGCCAGGCTTACGAAAGCGTCGACTCCCGGGGGAGGTT
GAGCAGTGATGAAAATAGCGTGTGGCAGGTCCTGCGGACCAAGACGCTGC
CCTGGCTGAAGGTCTGGGTACAAGCACATGTAGCCTTGGCCGCGCAAAAT
TGGGCGGTGGCCGCCGAGCGCTTCGGCGAGTTGGAAGTCCGCTATTTTCC
GAAGTCCACGCATTGCCTGTTGCAGCGAGCACGGGCGCAGGTGGGAATGG
ATCTGTACATGGACGCGCAGCAGACCTTTGGGCGGGCGGTTGAGGGGGAG
GGGGGGGGCGAGGTGATGGAGCACATGGATTATTACGCCGTGGTGCTCCG
GCAGAGGGCTGCAAAGGGGGAGCTGGCTCATTTAGCCCACCGACTGATGG
ATGTGGACACGAGGCGGCCGGAGCCGTGGATCGCAGCGGCCTTGCACAGC
GACCTGAAGGGGGAGAAGGAGAGCCCTTTGACGTTGGTGGAGCAGGCAAT
CAAGACGGATCACGAGCATGTCCTAGGCTACCAGGTACGAGGCACGTTGC
TGCTTGCGTTAGGGAAAGCGGAGGCGGCGGCTTCGTCCTTCCTTCAGGGC
AGTCGGCTCCACAAAGACATGAACGGCTACAAAGGCTTGGTGGACGCCTA
TTTGGTCCAACACAAATTTAAAGAGGCATTAGGGTGTGCAAAGGAAGCCT
TTTCCGCCATGCCAAAGAGCGCCACGGCCATCACCTTGGTGGGTCGCGTC
CTGGCCCAGTTGCCGGAGGGGCGCGAGAAGGCCAAGCGTGCCTTCCAAAG
GGCCCTGAGCATGAACCCGTCCACGGTCGATGCCCTTTTGGCCCTGGCAG
ACTTGCATCTTGGGGCACAGGAATACGATAAATGTATACATCTGTTGTCG
AGTAGTTTGCAAAATAGTGGGCATGATTTCTTGCATACCAAGTTGGGGGA
GGCCTATGCTATCAGTGGAGATTTTTCAAAGGCTCTAGCATCTTTTAACA
CTGCTGTTTCCATGAATCCATCTTCTGCACCAGCCACGGCTGGGCTGGAA
AAACTAGAGAAGCTTTTGCGGGGGGTTGAGCCAGAGGAGGATGGGGAGGG
GGAGGAGGTGGACGAGGAGGTTGAGGCAGAGGAGGATGATATGGTGGAGG
GCACGACAGACTAG

Synonyms

Publications