rna8027, rna8027 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8027
Unique Name	rna8027
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2920
Alignment location	KK037247.1:389213..390772 +

Link to JBrowse

Properties


Property Name	Value
Product	Uncharacterized domain protein UPF0066, YaeB-like domain protein
Orig transcript id	gnl\|cribi\|Naga_100023g14.3983.mrna
Orig protein id	gnl\|cribi\|Naga_100023g14.3983
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:389213..390772 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100023g14	gene7773	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8027	rna8027-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22667.1	cds8005	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:389213..390772+
coding sequence from alignment at KK037247.1:389213..390772+

mRNA sequence

>rna8027 ID=rna8027|Name=rna8027|organism=Nannochloropsis gaditana|type=mRNA|length=2920bp
AGTTGTCGAACGGAGCGCGACACGCATGCGTTTCCAGACCATCGAGCATA
CGTCGGAGACACATCTTAGTTTCCTACTGTAAAAATCGGGAAAAGACGGA
AGTGTGTACCTTGACACTCTATATTGCCTCTTGCGTCGTTTTCATCGAGA
CGCAATTTCTACTGAGTAATGCGTTGATTAACGTAAACCCCTCCATAACG
AGCGTGGTTCTCCCTCGCATTTTTATCATAAAATACGATAGGGCGCCATG
CAAACATATGATGCATCAGGTTCTAACATGTCAATGCTTTGGAAGCTTCA
AATTATTCCAGGCAACGATCAACTTTCTTTTCCGATCCCTGTTTGCCGAT
CGGCAGGCTCTTTCTTATTAAGTCATTTACAGACATACCTTGCCTTCACA
GAGCCTGCGAAGGGTTCAATCTTTGCAGTGTTCGTCTCTACTATATGACA
AGCGGATAATGGAAAAGTTAAAACCGGTAAAGCACGCACCTGTGCTTATT
GCTGGCGCAGGACCTGTAGGCTTGACGTTGAGCGCCCTGCTCTCACGCTG
TGGCGTCCAAAATGTTATATTCGAAAAAAATGCAGAGTTGTCGCAACATC
CGCAGGCCCATTTTATAAACTGTCGAACAATGGAGATTTTCCGACACGCA
TATTCTCCTAATTTGATGCGCCGGATCACTGAAATCGTTCCAGACCAGTC
ATGTTGGCGCCATTTCATTTATGCCACGTCAGTGTTGAATGGCACAGAGA
TTGGTCGTGTGGATAACTTCCCGTCATCCTCCACCTCCCGAAACACTGCC
GCTCCTCCCCTTGCCGCGCATCAAGTTCTGGACCGGCATAGTCCTGCGAA
AGTCATACATCTGTCACAGAGCCGGCTCATGCCGCTGCTTTTTGATGAGG
TCTTGGCAGAAGCAGGAGATACAACTCGCAGCCGAGGAGGCAAGGGGGGG
CATGTCGTCCGGTTCGGTCACGAGGTCAAGGACGTTCGAGAGGTGGTGGA
GGGCGTGCAGCTGCTTGTCGAGGAGAAAGAAACGTGCGATATGCATGTCT
TCCAGGGACACTACGTTGTTGCTGCGGACGGGTCTTCCAGTGTCATCCGC
CATAAAGCTCAAATAAGTATGCTCGGCGAGAGAGGTGTCCAGCATCTTAT
GAACATCCATTTTTCCTCTCGCGCTTTGGCGCAGGCCACATCACATCGAC
CAGCTATGCTGTACTTCATTTATAACGCAGAGGTTGTTTGTGTATTAGTG
GCGCATCACTACCCATCAGGGGAATTTGTGGCCCAAGTGCCCTACTTTCC
GCCTGCTCAGTCTCCTGAGGACTTTGGCCCTGTCACCGTGAGGGCATTGC
TAGATGCGGCCATTGGAACGGCGTTCACGGATTTGACTGTGCACTCTGTG
CGACCGTGGATCATGGACTGCCAAGTTGCTCAGCGCTACCGATCTGGGCG
CATTTTCCTCGCTGGAGACGCAGCTCACAGATTTCCTCCAGCTGGCGGCT
TCGGTATGAACACCGGTATTCAAGATGCTCATAATCTATCTTGGAAAATT
GCTTCAGTGTTACAAAACTCGGCGAATGGTGCATTATTGGACACATACGA
GACAGAGCGACGACCTGTAGCTGAGCGTAATGCAAGCCTCAGCATGCACA
ATTTCTCAAGAAGTCTAAGAGTGCCGCAGGCTTTGGGCCTAAACGTTGAA
CAAGCAAAAGATGCTGCAAGAATTTCAAGTCGGATCTCAAATGCCATGTC
AAAGGCCCTTCTGCCATACATGTTTGCTGTGGGTCGATGGCCTTTAAAAT
CATTGGAGAACGTGAGGCATCCTTATGGAGAAATGTGTCTGGCCAAGGCT
CGAAAAATTTTACGGGATGGTGCCAGCCTCCCGCTTCTCTTTCCAACGGA
TGATATTGGGTTTCGGTACCGGCCTGAGTTTCCCAGAGCACAAAATGCTG
AAGAGTCGATACATCATGGACTGGGTCTCGACCATCTGCAAGTAGGAGGG
CGTTTGCCACATATTTGGCTTCAATGTCTTCATCCCGACACGGGAGAGTC
TTTAGGAAATATATCATCGACAGATCTAGCCGATCAATTACAAGCTGCCT
TTCTTTCTAGTGGCATTTTTGATTTCACGAGATCTAGACCCTTTGCCATA
CTGCTTTCGTCTTCCGCAGAAGAAAAGATAACTCTCTCAGCATCTCAGAC
CGTTTTGAAGGGATGGAATATGCCTTTGATAGGTGTGAAAATTATTATGC
GTCCTGAAGTCTCATCGCATAGCAGCACAACAACCTTTGGAGAATTCGGA
CAAGAGGATCAACAGGCACTCTTTCGACATTTGATCAAAAAAGGGGGCTG
CCTCACATTGAATGATATTGAAGGGAACTGGGAACAGCGTATCCACTCGC
AAGCCAGCTCTATCTTAGTAAGACCAGATGGGCATATTCAGGCCCTGTTG
CCAAGCGATAAAGATCTCGACATTGATTTTTGATAGTGTACAGGAGACAT
GCGACTATGCAAGAAGAAGAAAAGGTCTCGCGATGTCATCTTTTTGGCGA
TCAATATTTATCATGTATGAGGAACCCAGGCTCCTGAAAACTCTTATGCA
TGACATGTTTTCTGACCCAAACGTCTGAATTATCCTTTTCTTTGGCTCCA
ATATGCCCTTAATGCTCGTTCGTTTCGTCCGATATGTGAACGCCCAAAAT
ATGGACTCTTTAAAGTAAACAGAGCTTGAAACCTAGATTGCAGAATTTGC
ATGCCTCAAAAAATCTGTGCACAGCTTTTCCTCACGGCTGCCGGGCATAG
CAGATTGATGGACCTCCCGCACCATCGCAAGTGTGACGGATGTCAGAGTT
ATATTGACAGAAATCTTACTGGTCACTGGATCCTCAAGCAAAGTATTTAT
TATCCCTAAGCCGTCCCTGA

protein sequence of rna8027

>rna8027-protein ID=rna8027-protein|Name=rna8027|organism=Nannochloropsis gaditana|type=polypeptide|length=359bp
MPSISKATYLWILTIAIACCSAIKCLAVQHDLKEAREKLRREEELRNMER
AGRTKAERRLRCELKALIRGQTNGGVCLKPIARISSPFKGRCGTPRQGLL
APNARGQIKLQSGICKTSLDQLNAFTHMWVIFLFDQNTNWTDALCSESES
FTYTAKIAPPRLFGKRVGVFSTRSPHRPNPIGLSVVAIQAVDEKAGVIHI
SGVDLTDGTPILDIKPYIPYDVVLEHKVPAWVVCEDLPAWQLQVMPEAEA
VLRELATERGSPFYSTYEELRALLRDVLLQDVRSIHKGRGTVVEDKSSLK
GGANFSEPFTCNIDDIAVEFVALQNAIQIIRCSEEYRNALDPGPEDNKLV
IENKRKSHG

mRNA from alignment at KK037247.1:389213..390772+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8027 ID=rna8027|Name=rna8027|organism=Nannochloropsis gaditana|type=mRNA|length=1560bp|location=Sequence derived from alignment at KK037247.1:389213..390772+ (Nannochloropsis gaditana)
cgccctctcgTCTCTTTTGCCAGGGCGCAGTTTCCAGACGCGCGGCAAAG
GGATTGCGGAGTACTTGAATTTAAGTCGTGCTACCTCATTCCAAATGCTT
AACCTTACGTCAGCTATACCGCCCTATCTTTAATTGTTTTCATTTTATGT
TGTTTTGGTACTTTTCTTGGCTAATTTCTCAGTAAATTCTACTCGCTGCG
TCCCAGATCAGGACTAGTCATGCCCTCGATCTCAAAGGCTACGTACTTAT
GGATACTGACAATAGCAATTGCTTGCTGTTCGGCGATAAAGTGTCTAGCA
GTGCAACATGATCTTAAAGAAGCGCGCGAAAAGCTtcgcagagaggagga
gctgcgtaACATGGAGCGCGCGGGGCGGACGAAAGCAGAGCGGCGTCTTC
GATGTGAACTTAAAGCACTAATCAGGGGACAAACCAATGGAGGCGTGTGT
CTTAAGCCCATTGCCAGGATAAGCTCTCCCTTCAAAGGGCGCTGTGGCAC
ACCGCGCCAAGGACTGCTGGCGCCTAATGCACGGTACGTTCTCATGTAGG
GCCGACAAATAAACATCGCTAGCGCTCATTTGAGATTGATGCTTACTCAG
AGGACAGATAAAACTTCAGTCCGGAATTTGTAAAACATCGCTGGATCAAC
TAAACGCTTTCACACACATGTGGGtaatcttcctcttcgaccaGAACACG
AATTGGACTGATGCTCTATGTTCTGAAAGTGAAAGCTTTACCTACACCGC
CAAAATTGCACCGCCGCGTCTTTTTGGTAAAAGAGTCGGTGTCTTCAGTA
CGCGCAGCCCGCATCGGCCCAATCCGATAGGTCTGAGCGTCGTAGCCATA
CAGGCTGTAGACGAAAAGGCCGGTGTCATCCATATCTCTGGTGTGGATCT
GACCGACGGCACCCCGATTCTGGACATTAAGCCCTACATTCCCTATGACG
TAGTCTTAGAGCATAAAGTTCCCGCTTGGGTCGTATGCGAGGATTTACCA
GCTTGGCAGTTACAGGTTATgcccgaggcggaggcagtATTAAGGGAGCT
AGCAACGGAACGAGGTTCCCCATTCTACTCGACATACGAGGAGTTGAGAG
CGCTACTGCGCGATGTATTGTTGCAAGACGTGCGAAGTATTCACAAGGGT
CGGGGGACTGTAGTTGAGGACAAAAGCTCGTTAAAGGGGGGAGCGAATTT
TTCGGAGCCTTTTACCTGCAACATTGACGACATCGCTGTGGAGTTTGTGG
CATTGCAAAATGCCATTCAAATAATACGCTGCTCTGAGGAATATCGAAAC
GCGCTTGATCCGGGGCCTGAGGATAATAAGCTTGTGATTGAGAACAAGAG
AAAGTCACACGGATAAAGAAATGTAGTTGCATGACTTTGTAGACTATTCG
TGGCAAACTCTTTAAAAAGTCAAAAGTCTCTTTTCCATGGATAAACGTag
aaaaattgaaaaacgTGCACAAGTGGATTTGGAGCTTTAAAGCCTCCTAT
TAACTTTACGTGTGGGAACAGTTCCTTGCGCTTCTCCAAAGCGTTATCTC
ACCATAATTG

Coding sequence (CDS) from alignment at KK037247.1:389213..390772+

>rna8027 ID=rna8027|Name=rna8027|organism=Nannochloropsis gaditana|type=CDS|length=2160bp|location=Sequence derived from alignment at KK037247.1:389213..390772+ (Nannochloropsis gaditana)
ATGCCCTCGATCTCAAAGGCTACGTACTTATGGATACTGACAATAGCAAT
TGCTTGCTGTTCGGCGATAAAGTGTCTAGCAGTGCAACATGATCTTAAAG
AAGCGCGCGAAAAGCTtcgcagagaggaggagctgcgtaACATGGAGCGC
GCGGGGCGGACGAAAGCAGAGCGGCGTCTTCGATGTGAACTTAAAGCACT
AATCAGGGGACAAACCAATGGAGGCGTGTGTCTTAAGCCCATTGCCAGGA
TAAGCTCTCCCTTCAAAGGGCGCTGTGGCACACCGCGCCAAGGACTGCTG
GCGCCTAATGCACGAGGACAGATAAAACTTCAGTCCGGAATTTGTAAAAC
ATCGCTGGATCAACTAAACGCTTTCACACACATGTGGGtaatcttcctct
tcgaccaGAACACGAATTGGACTGATGCTCTATGTTCTGAAAGTGAAAGC
TTTACCTACACCGCCAAAATTGCACCGCCGCGTCTTTTTGGTAAAAGAGT
CGGTGTCTTCAGTACGCGCAGCCCGCATCGGCCCAATCCGATAGGTCTGA
GCGTCGTAGCCATACAGGCTGTAGACGAAAAGGCCGGTGTCATCCATATC
TCTGGTGTGGATCTGACCGACGGCACCCCGATTCTGGACATTAAGCCCTA
CATTCCCTATGACGTAGTCTTAGAGCATAAAGTTCCCGCTTGGGTCGTAT
GCGAGGATTTACCAGCTTGGCAGTTACAGGTTATgcccgaggcggaggca
gtATTAAGGGAGCTAGCAACGGAACGAGGTTCCCCATTCTACTCGACATA
CGAGGAGTTGAGAGCGCTACTGCGCGATGTATTGTTGCAAGACGTGCGAA
GTATTCACAAGGGTCGGGGGACTGTAGTTGAGGACAAAAGCTCGTTAAAG
GGGGGAGCGAATTTTTCGGAGCCTTTTACCTGCAACATTGACGACATCGC
TGTGGAGTTTGTGGCATTGCAAAATGCCATTCAAATAATACGCTGCTCTG
AGGAATATCGAAACGCGCTTGATCCGGGGCCTGAGGATAATAAGCTTGTG
ATTGAGAACAAGAGAAAGTCACACGGATAAATGCCCTCGATCTCAAAGGC
TACGTACTTATGGATACTGACAATAGCAATTGCTTGCTGTTCGGCGATAA
AGTGTCTAGCAGTGCAACATGATCTTAAAGAAGCGCGCGAAAAGCTtcgc
agagaggaggagctgcgtaACATGGAGCGCGCGGGGCGGACGAAAGCAGA
GCGGCGTCTTCGATGTGAACTTAAAGCACTAATCAGGGGACAAACCAATG
GAGGCGTGTGTCTTAAGCCCATTGCCAGGATAAGCTCTCCCTTCAAAGGG
CGCTGTGGCACACCGCGCCAAGGACTGCTGGCGCCTAATGCACGAGGACA
GATAAAACTTCAGTCCGGAATTTGTAAAACATCGCTGGATCAACTAAACG
CTTTCACACACATGTGGGtaatcttcctcttcgaccaGAACACGAATTGG
ACTGATGCTCTATGTTCTGAAAGTGAAAGCTTTACCTACACCGCCAAAAT
TGCACCGCCGCGTCTTTTTGGTAAAAGAGTCGGTGTCTTCAGTACGCGCA
GCCCGCATCGGCCCAATCCGATAGGTCTGAGCGTCGTAGCCATACAGGCT
GTAGACGAAAAGGCCGGTGTCATCCATATCTCTGGTGTGGATCTGACCGA
CGGCACCCCGATTCTGGACATTAAGCCCTACATTCCCTATGACGTAGTCT
TAGAGCATAAAGTTCCCGCTTGGGTCGTATGCGAGGATTTACCAGCTTGG
CAGTTACAGGTTATgcccgaggcggaggcagtATTAAGGGAGCTAGCAAC
GGAACGAGGTTCCCCATTCTACTCGACATACGAGGAGTTGAGAGCGCTAC
TGCGCGATGTATTGTTGCAAGACGTGCGAAGTATTCACAAGGGTCGGGGG
ACTGTAGTTGAGGACAAAAGCTCGTTAAAGGGGGGAGCGAATTTTTCGGA
GCCTTTTACCTGCAACATTGACGACATCGCTGTGGAGTTTGTGGCATTGC
AAAATGCCATTCAAATAATACGCTGCTCTGAGGAATATCGAAACGCGCTT
GATCCGGGGCCTGAGGATAATAAGCTTGTGATTGAGAACAAGAGAAAGTC
ACACGGATAA

Synonyms

Publications