EWM22723.1, cds7951 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|585103306|gb|EWM22723.1| (superoxide dismutase [Nannochloropsis gaditana]) HSP 1 Score: 250.751 bits (639), Expect = 2.955e-84 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
Query: 1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRVEVRGQGGEEGGRSGLVCGGDMW 126
MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRVEVRGQGGEEGGRSGLVCGGDMW
Sbjct: 1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRVEVRGQGGEEGGRSGLVCGGDMW 126
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|553193825|ref|XP_005855837.1| (Cu/Zn superoxide dismutase [Nannochloropsis gaditana CCMP526] >gi|422293210|gb|EKU20510.1| Cu/Zn superoxide dismutase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 210.69 bits (535), Expect = 2.610e-68 Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0
Query: 1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRVE 105
MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEG+AEFRVE
Sbjct: 1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGKAEFRVE 105
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|553193829|ref|XP_005855838.1| (Cu/Zn superoxide dismutase [Nannochloropsis gaditana CCMP526] >gi|422293211|gb|EKU20511.1| Cu/Zn superoxide dismutase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 208.764 bits (530), Expect = 1.542e-67 Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0
Query: 1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRV 104
MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEG+AEFRV
Sbjct: 1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGKAEFRV 104
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|298710550|emb|CBJ25614.1| (disproportionate superoxide radical into hydrogen peroxide [Ectocarpus siliculosus]) HSP 1 Score: 111.694 bits (278), Expect = 7.290e-29 Identity = 52/92 (56.52%), Postives = 64/92 (69.57%), Query Frame = 0
Query: 16 ETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRVEVR 107
E + G + QA E APTI+ G I G+ PGRHG+ +H FGDFSEG AGGIFNPF K HGAPDD++RM GDLGNI+A+ G + +E R
Sbjct: 12 EEGLTGSLMLSQAQEEAPTIISGEIAGMRPGRHGIRVHVFGDFSEGLVSAGGIFNPFSKNHGAPDDEDRMVGDLGNIDADDAGVCKVHLEDR 103
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|1183379263|gb|ORY04744.1| (copper/zinc superoxide dismutase [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 109.768 bits (273), Expect = 3.526e-28 Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 0
Query: 1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRV 104
M + VA++RG ++S+QG + F Q SE +P ++ +TGLAPG+HG HIH FGD + G AG FNPFGK HGAPD + R AGDLGN+ A+ +G+A V
Sbjct: 1 MVKAVAVLRG-----DSSVQGTVYFTQESENSPVKVEATLTGLAPGKHGFHIHEFGDNTNGCTSAGAHFNPFGKTHGAPDAEVRHAGDLGNVVASEDGQATLSV 99
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|1043299373|gb|OBZ84477.1| (Superoxide dismutase [Cu-Zn] [Choanephora cucurbitarum]) HSP 1 Score: 108.997 bits (271), Expect = 6.407e-28 Identity = 53/105 (50.48%), Postives = 67/105 (63.81%), Query Frame = 0
Query: 1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRVE 105
M +A+++GA I GV++F QASE AP ++D TGL PG+HG HIH FGD + G AG +NP GK HGAP+ + R AGDLGNI AN G A +VE
Sbjct: 1 MVNAIAVLKGA------DISGVVKFSQASEDAPVVVDASFTGLKPGKHGFHIHEFGDNTNGCISAGPHYNPHGKTHGAPEAEVRHAGDLGNITANASGEATLKVE 99
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|671695284|emb|CDS10004.1| (hypothetical protein LRAMOSA02681 [Lichtheimia ramosa]) HSP 1 Score: 108.227 bits (269), Expect = 1.321e-27 Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 0
Query: 1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRV 104
M + VA+IRG ++ + G + F Q SE APT ++ +TGL G+HG H+H FGD + G AG FNPFGK HGAP+D+ER GDLGNI A+ +G+ +V
Sbjct: 1 MVKAVAVIRG-----DSPVTGTVTFTQESENAPTTVEATVTGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPFGKTHGAPEDEERHVGDLGNIVASSDGKGTLKV 99
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|1069956733|ref|XP_018289243.1| (hypothetical protein PHYBLDRAFT_31745 [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026586621|gb|OAD71203.1| hypothetical protein PHYBLDRAFT_31745 [Phycomyces blakesleeanus NRRL 1555(-)]) HSP 1 Score: 105.531 bits (262), Expect = 1.559e-26 Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 0
Query: 1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRV 104
M + VA+IRG ++ ++G + F Q SE PT ++ ++GL G+HG H+H FGD + G AG FNP+GK HGAP+D+ER GDLGNI A +G A F++
Sbjct: 1 MVKAVAVIRG-----DSPVKGTVTFTQESENGPTTVEASVSGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPYGKTHGAPEDEERHVGDLGNIHAGKDGLATFKI 99
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|541041650|gb|ERG80881.1| (superoxide dismutase [Ascaris suum]) HSP 1 Score: 106.301 bits (264), Expect = 2.587e-26 Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = 0
Query: 2 ARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRV 104
+R VA++RG E ++GV+ Q+ E PTIL G I+GL PG HG H+H +GD + G AG FNPF K HG P D+ER GDLGN+EA+ G A+F++
Sbjct: 34 SRAVAVLRG-----EGDVRGVVYLTQSKEDEPTILKGEISGLTPGLHGFHVHEYGDMTNGCISAGAHFNPFKKTHGGPTDEERHIGDLGNVEADANGIAKFQI 131
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|1183479465|gb|ORZ03304.1| (superoxide dismutase Cu-Zn [Syncephalastrum racemosum]) HSP 1 Score: 104.76 bits (260), Expect = 3.264e-26 Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 0
Query: 1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRV 104
M + VA++RG ++ ++G + F Q SE PT ++ ++GL PG+HG H+H FGD + G AG FNPFGK HGAP+D ER GDLGN+ A +G A +V
Sbjct: 1 MVKAVAVVRG-----DSPVKGTVVFVQESENGPTTVEATLSGLTPGKHGFHVHEFGDNTNGCTSAGAHFNPFGKTHGAPEDAERHVGDLGNVVAGQDGNATLKV 99 The following BLAST results are available for this feature:
BLAST of EWM22723.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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