rna7944, rna7944 (mRNA) Nannochloropsis gaditana

Overview
Namerna7944
Unique Namerna7944
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1826
Alignment locationKK037247.1:173195..174579 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100143g4.3780.mrna
Orig protein idgnl|cribi|Naga_100143g4.3780
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:173195..174579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100143g4gene7693Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22751.1cds7922Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7944rna7944-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7944 ID=rna7944|Name=rna7944|organism=Nannochloropsis gaditana|type=mRNA|length=1826bp
AGCATGTTTTTAATCGGATTTTACGCGACTACAGGCGCCAAAAGCTTTCC
CTTGCCCATATGTCTTCGCCCGCCCGAGGACACGTCGAAAATATGTTAGC
CGACCAAACAGAAGGCAGCGACGACAATTGGCTACGAGACTTCCGAGAAA
TGAAGCAGTCAATACTGATGTCGCCTGCAGGCACCTCATCGACAGGCTTT
CCTTCCCCAGCACGCCGCATATCAGAGGTAGACCCTGCGGCCGTCAACGG
TGATCATTTAGATCAGGAAATTAAATCTATCGTAGATATTCTTCAAGACG
AAGATGCAGCGAACAAGAAGTTGAATATTGGCAGCAGCCATCATCCCGTG
ATCGGAGGTAAAGAAAAGGCAATTAAGGGTCCGTACGACAGATTGACTGG
GTGCGCACCGGCAGCCAGTCCCTTGTCCTCTTCCTCCTCCTCCTCGTCTG
AATCGTCCCGTGCTTCCTCTCCAGAGAGCACTCCCTCGCCAGGCCACGGC
GGCTTCAAAAACAGCAGTAGCCACGAAAGCAGCTGCTACAGCCCTAATGC
CTATCAAATCCTCCGCAGTGAGCAGCCTCTGGCACCACCCTTTATTGACG
ATCCGACGGAAGACAACAGAAAGCCTTCCTACACGGACATGCACCGGACG
ACGAACTATCAGGAACTACATCAAGCCCAACCATCTTGGGCCCCGGAAAC
ACAGCACGAGGAGTCTTCGTTAGCCCGGCCTCCCAGCGATATCGCCTCGG
GTAATTTGCTAAGGATGCTGTACGAAGAGAAGGAGCGAGGGCAGGGACAA
AAAGCGCGGATCCAGGGATTGGAAGTGGCCCTGGCCGAGACAACACAAGA
AAAGGAGGTAGCTATGGCCTCGGCTCGTCTTGAAATTCACGAACTTAGAG
GCATGCTTCGGCGAGTGGCCTCTGAAAGTACCTTTTCCGACGTCTTCACG
CTCTACGAGGCTCACATTGCCCGCGTGGAGAAGGAGGCAAACGTGCTGCG
GGACCGCAATGTCCACCTAGAAGCTTGGCGACTGGATCAACGGCAACAAA
GCGAGGAGAGCAGGGGGCAAGGAAGGGCTGATGCCTGTGGAGGGGAAGGC
GACAGCCAAGGTTGCAATCGACCCGATCGTCCCACTCCCTCGCCATCGCG
AAAGAATAGAAAGTCTCTTTATGGGGCGACAAAACCAGCGCCCCATAATG
CACAGGATACATTTTGGAGCCCCACGTCGGCTCTGTCAACGGCAATGAGA
ATGAACGGAAGCCAGCCGGCACCGACAGGGGTGCTCGTTGCGTTAAAGGG
TAAAGTCAAGGAGTTACAACGGCAGGTGAACGATCTCAAGCAAGAGACTG
GGGAGCTGCGGCGGCGAGAACGACAATTTTTGGTGCAGAAGCGCATGGTC
GAGACGACGTGGGCCCGAGTGCAAAAGGTTCAATTTATGGCGAAAGGCCT
GGAAAGCAGCCTGGCTTCCTCTCGACTCGACGGGGCACGGGCAGAGGCTC
GTTTGGAAGAAGCTGAGGGAGAGATCCGGGCTTTGCGTCAGCGGGAAGCG
GTGTTGGTCATGGACCGCGACAGGTGTTTGCAGGAGCTTGAGGTGATTCG
CAGGCAACTTGGTGGCGTTGGCAATGCCCGGGGCAGTGCCTTTTCCAAAG
GAACGCATGGGAGAGAGAGAGATTGTCCGAGGCGCTAGAATGGACTTGGG
AATGGTGAATTTTCGAAATGAGGAAGCCTGGCGTCGCAAATATGCAGCGT
AGCTATCATAGTCACAGTATTTGCCGGGAGGGCAACTTTATAAAGCGCAA
TAAAGAAATCAGATATCTAATATCGT
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protein sequence of rna7944

>rna7944-protein ID=rna7944-protein|Name=rna7944|organism=Nannochloropsis gaditana|type=polypeptide|length=407bp
MWSSQHNSSMRRRAHVSRPASSLLDERVNLQSYDHSKTFSARCKHVICMN
FLIFLVLCICSGIFTFQANISSTSRRVHKQYTEDRSNKVSSTSLFRSSNW
RLRRLSPEETGKRRRQKSYKSSSTSEPSSSQLPVSSTHVPQRPPPRFIPG
TLPQSKDISTAPLAAKFAALDDASASAERSEGVRTAPMTKSNRDIKKVSG
RKKLLNSLTSSIDARSETDASEVHTGEAQMTSAPPPVEMKEEEPLFTHED
VVPIQCTSHEMSRTMDFAISQVEDGDVNCVDATDSEEHLLSVEDVAMQAP
DEYTSGEALASPHSPSSLCPLASSWIGSGNGPQREDKHVSESFELPSEAI
RDAVTAGEILEILESTTELEEVDIPESGSASVRDPLDYIPPFALEEIACV
DMISWNA
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mRNA from alignment at KK037247.1:173195..174579-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7944 ID=rna7944|Name=rna7944|organism=Nannochloropsis gaditana|type=mRNA|length=1385bp|location=Sequence derived from alignment at KK037247.1:173195..174579- (Nannochloropsis gaditana)
CTCCAATGGACAAATGTTGTCGTTGTTGGTACATAACGGCTCTCTTGACG
TACCTATAACACAGCAGCCTTCGCTATGTGGTCGTCACAACACAACTCGT
CCATGCGGAGGCGTGCACATGTCTCACGGCCTGCTTCCTCGCTTTTGGAC
GAACGAGTAAATTTACAATCCTACGATCATTCAAAAACCTTTTCTGCACG
TTGCAAGCATGTCATTTGTATGAATTTCTTGATATTTTTAGTGCTTTGCA
TTTGTAGTGGCATTTTTACCTTTCAGGCAAATATAAGCAGCACTTCCAGA
AGAGTCCACAAGCAATACACAGAGGATCGATCCAACAAAGTTTCTAGCAC
TTCATTATTTCGTTCATCGAATTGGCGACTTCGTAGGCTGTCCCCCGAGG
AAACGGGAAAACGTAGGAGGCAAAAGTCTTATAAGTCTTCCTCAACTTCG
GAACCCTCCTCGTCCCAACTACCGGTATCATCTACGCATGTGCCCCAGCG
TCCTCCACCTCGCTTCATTCCTGGTACACTACCACAGTCTAAAGACATAT
CGACAGCTCCACTAGCAGCGAAGTTCGCCGCACTTGACGATGCAAGCGCG
TCAGCAGAAAGATCAGAGGGCGTTCGTACAGCACCGATGACAAAAAGTAA
TCGCGACATAAAGAAAGTGTCGGGCAGAAAGAAGTTACTCAACTCTCTAA
CATCTTCAATTGATGCCAGAAGCGAGACAGATGCAAGTGAGGTTCACACA
GGGGAAGCGCAGATGACAAGTGCTCCACCTCCAGTGGAAATGAAAGAAGA
AGAGCCTCTTTTCACGCACGAGGATGTGGTACCTATTCAATGCACTTCTC
ATGAAATGTCCAGAACTATGGACTTTGCAATATCCCAGGTTGAAGATGGC
GATGTAAATTGTGTGGATGCGACGGACAGTGAGGAACATTTGTTGTCTGT
TGAAGATGTGGCCATGCAAGCACCTGATGAGTATACATCTGGGGAGGCCC
TAGCTTCTCCTCATTCGCCATCGTCTTTGTGCCCTCTCGCTTCGTCCTGG
ATAGGGTCTGGAAACGGCCCCCAACGTGAGGATAAACACGTGAGCGAGTC
ATTTGAGCTGCCAAGTGAAGCTATTCGAGACGCCGTAACAGCAGGAGAGA
TACTGGAAATTTTGGAATCGACTACGGAGTTGGAGGAAGTCGACATTCCA
GAATCTGGGAGTGCTTCTGTGCGTGATCCGTTGGACTACATTCCTCCATT
TGCTTTGGAAGAGATTGCCTGCGTGGACATGATTTCTTGGAATGCTTGAA
CCTGAGTTTAAAAACGCGGATTTGTTTGCTGATGCACAACAAACTTGTGA
GATACAAACCAAATTCTTTGAGCCTTGCATCCCAT
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Coding sequence (CDS) from alignment at KK037247.1:173195..174579-

>rna7944 ID=rna7944|Name=rna7944|organism=Nannochloropsis gaditana|type=CDS|length=1224bp|location=Sequence derived from alignment at KK037247.1:173195..174579- (Nannochloropsis gaditana)
ATGTGGTCGTCACAACACAACTCGTCCATGCGGAGGCGTGCACATGTCTC
ACGGCCTGCTTCCTCGCTTTTGGACGAACGAGTAAATTTACAATCCTACG
ATCATTCAAAAACCTTTTCTGCACGTTGCAAGCATGTCATTTGTATGAAT
TTCTTGATATTTTTAGTGCTTTGCATTTGTAGTGGCATTTTTACCTTTCA
GGCAAATATAAGCAGCACTTCCAGAAGAGTCCACAAGCAATACACAGAGG
ATCGATCCAACAAAGTTTCTAGCACTTCATTATTTCGTTCATCGAATTGG
CGACTTCGTAGGCTGTCCCCCGAGGAAACGGGAAAACGTAGGAGGCAAAA
GTCTTATAAGTCTTCCTCAACTTCGGAACCCTCCTCGTCCCAACTACCGG
TATCATCTACGCATGTGCCCCAGCGTCCTCCACCTCGCTTCATTCCTGGT
ACACTACCACAGTCTAAAGACATATCGACAGCTCCACTAGCAGCGAAGTT
CGCCGCACTTGACGATGCAAGCGCGTCAGCAGAAAGATCAGAGGGCGTTC
GTACAGCACCGATGACAAAAAGTAATCGCGACATAAAGAAAGTGTCGGGC
AGAAAGAAGTTACTCAACTCTCTAACATCTTCAATTGATGCCAGAAGCGA
GACAGATGCAAGTGAGGTTCACACAGGGGAAGCGCAGATGACAAGTGCTC
CACCTCCAGTGGAAATGAAAGAAGAAGAGCCTCTTTTCACGCACGAGGAT
GTGGTACCTATTCAATGCACTTCTCATGAAATGTCCAGAACTATGGACTT
TGCAATATCCCAGGTTGAAGATGGCGATGTAAATTGTGTGGATGCGACGG
ACAGTGAGGAACATTTGTTGTCTGTTGAAGATGTGGCCATGCAAGCACCT
GATGAGTATACATCTGGGGAGGCCCTAGCTTCTCCTCATTCGCCATCGTC
TTTGTGCCCTCTCGCTTCGTCCTGGATAGGGTCTGGAAACGGCCCCCAAC
GTGAGGATAAACACGTGAGCGAGTCATTTGAGCTGCCAAGTGAAGCTATT
CGAGACGCCGTAACAGCAGGAGAGATACTGGAAATTTTGGAATCGACTAC
GGAGTTGGAGGAAGTCGACATTCCAGAATCTGGGAGTGCTTCTGTGCGTG
ATCCGTTGGACTACATTCCTCCATTTGCTTTGGAAGAGATTGCCTGCGTG
GACATGATTTCTTGGAATGCTTGA
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Synonyms
Publications