EWM22768.1, cds7906 (CDS) Nannochloropsis gaditana

Overview
NameEWM22768.1
Unique Namecds7906
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:133382..133754 +
Alignment locationKK037247.1:133903..134007 +
Alignment locationKK037247.1:134092..134147 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22768.1
ProductRestriction endonuclease, type II
Orig transcript idgnl|cribi|Naga_100554g5.202.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:133382..133754 +
KK037247.1supercontigKK037247.1:133903..134007 +
KK037247.1supercontigKK037247.1:134092..134147 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003677DNA binding
GO:0003684damaged DNA binding
GO:0004519endonuclease activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR011335Restrct_endonuc-II-like
IPR004579DNA_repair_Rad10
Homology
[Close]
BLAST of EWM22768.1 vs. NCBI_GenBank
Match: gi|585103372|gb|EWM22768.1| (Restriction endonuclease, type II [Nannochloropsis gaditana])

HSP 1 Score: 354.755 bits (909), Expect = 1.088e-123
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0 
Query:    1 MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYEPWDLCSFSWGSSPQSAS 177
            MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYEPWDLCSFSWGSSPQSAS
Sbjct:    1 MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYEPWDLCSFSWGSSPQSAS 177
[Close]
BLAST of EWM22768.1 vs. NCBI_GenBank
Match: gi|585103373|gb|EWM22769.1| (Restriction endonuclease, type II [Nannochloropsis gaditana])

HSP 1 Score: 318.161 bits (814), Expect = 4.255e-109
Identity = 161/169 (95.27%), Postives = 162/169 (95.86%), Query Frame = 0 
Query:    1 MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYE--PWDLCSF 167
            MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDY    +  C F
Sbjct:    1 MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIF 169
The following BLAST results are available for this feature:
BLAST of EWM22768.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103372|gb|EWM22768.1|1.088e-123100.00Restriction endonuclease, type II [Nannochloropsis... [more]
gi|585103373|gb|EWM22769.1|4.255e-10995.27Restriction endonuclease, type II [Nannochloropsis... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7928rna7928Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications