rna7928, rna7928 (mRNA) Nannochloropsis gaditana

Overview
Namerna7928
Unique Namerna7928
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1518
Alignment locationKK037247.1:132920..134414 +

Link to JBrowse

Properties
Property NameValue
ProductRestriction endonuclease, type II
Orig transcript idgnl|cribi|Naga_100554g5.202.mrna
Orig protein idgnl|cribi|Naga_100554g5.202
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:132920..134414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100554g5gene7680Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7928rna7928-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22768.1cds7906Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7928 ID=rna7928|Name=rna7928|organism=Nannochloropsis gaditana|type=mRNA|length=1518bp
ATGGCAAGCCGGGGCCTGCTTTGTGTCTCCCTATTATTGTCCACATCTCC
CTACGTGCAGGCGTGGGGTCAAAGTGGAAGCCGTAGTGACGGCGGAAGGA
CGATGGATGCAAGCCTTGCCATGAGCAGTCGGGATATATGCTTCAGTCAT
GCCCTCGTTTTACGCCCACATGCACGTGTCCCCAGTCCTTTTTCTGAGTC
GCCCTCCACCATGGCACGTTTCCGGACCTGCATGTCTTCCTCCTCCTCCA
CCTCCTCGGCGGCCTGGCCTCCCTCGCGGTTTCGCGCCTCCACCACCCGC
CTTACCGCCCGCGCCCAAGTCTTCGACGAGGATGACCTGTCTTCTGCACC
GTCCCTACGCACCCAACCACGTACCAAGCCGGGAACACAGGGAGGGGAGT
GGCAGCGGGTGGACGAGGGCGTGGACGTATTCTTTCCAGAAGCTTCGGCG
CCGCCCAAGGGCCTCGTGCATTTTGTGGGCGGGGCAGTTGTGGGAGCCTT
CCCTCGGGCGGCCTATGGCCCCCTCTTGGAGAGATTGGGAAGACAGGGCT
ACTGTGTGATCGCCACGGCCCTTCCTTTCTCCCTCTTCGACCACGCAGCC
GGCGCCCGTGCCCTGGCAATGGCCTATGCCCGCGGGGAGGCTTACGTGGA
GGGGGTCTACGGACCCCGGGTCCGACAACAGCTTCCCGTCTTCGGGCTCG
GGCACTCCCTTGGCGCCAAAATGCTCATCCTCTTGGGCTCACCCCCTCCC
TCCCTCCCTTCCTTCTCCTCTTCCTCGGCGCCCACCGCTGGCCCCCGCCG
TGCCAACGTCCTGGTCGCCTTCAACAATTTTTCCGCGAAGCAATCTGTGC
CGCTGTTGGAGGAACTCAGGGAACTGGGGCAGTCCGTGGCGGGGATGGAC
TTGAGCGGCAAGCTGGAAGATATCTCCCGGATGGTTTCGTCGTTGGCTGC
CCTGAACCTCTCGGGTGCATCATCCCCGAATGCGCAGAGAGAGACCACCA
GCGGGTTCGACTTGGCCTCCAAGGGACTGACCATGGCTATGGACTTTCTC
TCCTCCCTCCCCACCTCCGGTGTGCCCGACTTCACCCCGTCGCCGGAAGA
AACGTGGGCCCTCCTCTCCTCCCCCCCTCTGTTCCCGTCCTCCTCCCTCC
CGTCGTCCTCTCCGTCCTACGCCGTGCTCAACAACCTGGTGGTCTCTTTC
GACAAGGACACCATCGACCAGTCGGAAGAGCTAGTTGCCCTCCTCCGAGA
GCGAGGGAGGGAAGGAGGGCGGGGGGGAGGACGGGTTGAGCATGTGCGCT
TGGTAGGGACGCATTTGACCCCTAACACGCCGCGGGGCGTCCTGGACGCG
GATTCGGAGGAGAAGATGGAGGAAGTCAAGGAAAAGGACCGCGTGTGGGA
CACATACGAAAGGAAATGGGTGGAGGAGGTGGGGGAGGAGAGATTGGGTG
CTGAGGGAGGGAGCGACGCGTCCGCTAGAACCGTGGCAAAGGTGGCGCGA
CGGGAGCTTGACGCGTGA
back to top

protein sequence of rna7928

>rna7928-protein ID=rna7928-protein|Name=rna7928|organism=Nannochloropsis gaditana|type=polypeptide|length=177bp
MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPA
TTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQE
AVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQ
FIPGIVPDYEPWDLCSFSWGSSPQSAS
back to top

mRNA from alignment at KK037247.1:132920..134414+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7928 ID=rna7928|Name=rna7928|organism=Nannochloropsis gaditana|type=mRNA|length=1495bp|location=Sequence derived from alignment at KK037247.1:132920..134414+ (Nannochloropsis gaditana)
CGTGTTGCCCTCCTTTTTGCTGTTTGTGGGCCGTTCTTTTTAGAAACATT
TCACCCGCGTGGCAaggatttttttttttttggcCAGTTTCTTGTACTGT
TCTGTCCTGTCTTCTCGCGAGCAAAATCATGTGTTGGCTATCGTGTGTGG
TGTGCTGAATAACAAAGTTTCGCGACGAGAAGCGTCGCCCTAAAAACCTT
CAACACACAGGCACGAGGTCGTCAGACCCAACTGccctttcccgtccttg
ccgTCCACTCTCCTCATGAATTCCATGGCATCTTTCGCATCTCTTCAACC
TGAAGCACACAAATGTCGTAGCAGGGGGCCATTATCGTTTTTCACCAAAG
GGGCTCCCACTGTGGTACCGGGAAGCCCAACTTTCTACATATTCCTTGCT
GACCCCTCGACCAAGACCGCGCTGCACAAACCCCAGCCGCGCGTTTCATC
GCTCGCTTTACCATGAAAAAGGACCACCCCGACTCACGCTCGCGTCCCGC
TCCCTTTCGAATCTCCATCCCGTCGTtggtggaggccgggagCCGGGAGC
AAGCCCAAGTAGGAAGACAGCCTGTCCCTCctaccgtcctcctcccaaga
TCCACCCCAGCAACGACCGCGACGGCGCCTCCATACGCACCTTCCACGAA
TGGAAAGGGACCGGGAAGAGTGGAAGACGgtagaggtggagggaggcttg
gagaagggggtgggggggccTCCCTTCCGCAGGCATCAGTACCCTGGGGG
CGTGGCCAAGAGGCAGTATTTGACGCGAAGCACCGAGGAAGCATGACCCT
CCCTATCCTTCCCCCGTCGCATAACCTCAGTGCAGGTACGTCCATGCTAT
GTCCGCCTTTGCTTTTTCGTGTAATTCTTGCATGGAAAGGCCACTCTCCT
CGTCGCGTCTTTGCCCCGTAAGCtcaggcctccctccctccctttcacac
atgcaccgccctccctcgtcctcgcccttaCAGGAGTCAATGTCATCAGC
GTCTCCCCACGCCAAGAAGGCAATCCGGttttgaaaaaaatcaaaaacgT
GCGCTATCAGTTCATCCCTGGCATTGTCCCCGACTATGGTCAGTGCCATT
cgtcctttgccctctctccctctctcgatTCCCACCTTGATCCCTCCTAt
tgtttcccctcctcgtcaccaGAGCCTTGGGACctttgctctttttcctg
ggGGAGCTCGCCTCAATCTGCCTCTTGACCCCCCcgtcgttttcctcctt
cttcctcgctcgcccttttctccctccttttccagtgCTGGGCGCGTACA
CATGCTGTATCTTTATCTCCCTTCGGTACCACCTTTTGCATGGCCAATAC
CTGTTTCAGCGGGTGAAGGAATTGCGACGGTGAGatagaaaggagggagg
gaggaagggagggaaggagggagggagagagacgaaAGGTTTCGCATTTG
CTGACCTGGCAGCAGTCCCACCACCGCTCCATCGTCTCAGAAACC
back to top

Coding sequence (CDS) from alignment at KK037247.1:132920..134414+

>rna7928 ID=rna7928|Name=rna7928|organism=Nannochloropsis gaditana|type=CDS|length=1602bp|location=Sequence derived from alignment at KK037247.1:132920..134414+ (Nannochloropsis gaditana)
ATGAAAAAGGACCACCCCGACTCACGCTCGCGTCCCGCTCCCTTTCGAAT
CTCCATCCCGTCGTtggtggaggccgggagCCGGGAGCAAGCCCAAGTAG
GAAGACAGCCTGTCCCTCctaccgtcctcctcccaagaTCCACCCCAGCA
ACGACCGCGACGGCGCCTCCATACGCACCTTCCACGAATGGAAAGGGACC
GGGAAGAGTGGAAGACGgtagaggtggagggaggcttggagaagggggtg
ggggggccTCCCTTCCGCAGGCATCAGTACCCTGGGGGCGTGGCCAAGAG
GCAGTATTTGACGCGAAGCACCGAGGAAGCATGACCCTCCCTATCCTTCC
CCCGTCGCATAACCTCAGTGCAGGAGTCAATGTCATCAGCGTCTCCCCAC
GCCAAGAAGGCAATCCGGttttgaaaaaaatcaaaaacgTGCGCTATCAG
TTCATCCCTGGCATTGTCCCCGACTATGAGCCTTGGGACctttgctcttt
ttcctgggGGAGCTCGCCTCAATCTGCCTCTTGAATGAAAAAGGACCACC
CCGACTCACGCTCGCGTCCCGCTCCCTTTCGAATCTCCATCCCGTCGTtg
gtggaggccgggagCCGGGAGCAAGCCCAAGTAGGAAGACAGCCTGTCCC
TCctaccgtcctcctcccaagaTCCACCCCAGCAACGACCGCGACGGCGC
CTCCATACGCACCTTCCACGAATGGAAAGGGACCGGGAAGAGTGGAAGAC
GgtagaggtggagggaggcttggagaagggggtgggggggccTCCCTTCC
GCAGGCATCAGTACCCTGGGGGCGTGGCCAAGAGGCAGTATTTGACGCGA
AGCACCGAGGAAGCATGACCCTCCCTATCCTTCCCCCGTCGCATAACCTC
AGTGCAGGAGTCAATGTCATCAGCGTCTCCCCACGCCAAGAAGGCAATCC
GGttttgaaaaaaatcaaaaacgTGCGCTATCAGTTCATCCCTGGCATTG
TCCCCGACTATGAGCCTTGGGACctttgctctttttcctgggGGAGCTCG
CCTCAATCTGCCTCTTGAATGAAAAAGGACCACCCCGACTCACGCTCGCG
TCCCGCTCCCTTTCGAATCTCCATCCCGTCGTtggtggaggccgggagCC
GGGAGCAAGCCCAAGTAGGAAGACAGCCTGTCCCTCctaccgtcctcctc
ccaagaTCCACCCCAGCAACGACCGCGACGGCGCCTCCATACGCACCTTC
CACGAATGGAAAGGGACCGGGAAGAGTGGAAGACGgtagaggtggaggga
ggcttggagaagggggtgggggggccTCCCTTCCGCAGGCATCAGTACCC
TGGGGGCGTGGCCAAGAGGCAGTATTTGACGCGAAGCACCGAGGAAGCAT
GACCCTCCCTATCCTTCCCCCGTCGCATAACCTCAGTGCAGGAGTCAATG
TCATCAGCGTCTCCCCACGCCAAGAAGGCAATCCGGttttgaaaaaaatc
aaaaacgTGCGCTATCAGTTCATCCCTGGCATTGTCCCCGACTATGAGCC
TTGGGACctttgctctttttcctgggGGAGCTCGCCTCAATCTGCCTCTT
GA
back to top
Synonyms
Publications