EWM22788.1, cds7885 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22788.1 vs. NCBI_GenBank
Match: gi|585103405|gb|EWM22788.1| (Exoribonuclease, phosphorolytic domain 1 [Nannochloropsis gaditana]) HSP 1 Score: 675.241 bits (1741), Expect = 0.000e+0 Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0 Query: 1 MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPSPARSESFRMDGRAYNQLRPVFIDLNTASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYMEQEGGGEGGWGGLGEMTRDDRAMRAQDEKHPESVDGDVK 335 MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPSPARSESFRMDGRAYNQLRPVFIDLNTASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYMEQEGGGEGGWGGLGEMTRDDRAMRAQDEKHPESVDGDVK Sbjct: 1 MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPSPARSESFRMDGRAYNQLRPVFIDLNTASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYMEQEGGGEGGWGGLGEMTRDDRAMRAQDEKHPESVDGDVK 335
BLAST of EWM22788.1 vs. NCBI_GenBank
Match: gi|585103406|gb|EWM22789.1| (Exoribonuclease, phosphorolytic domain 1 [Nannochloropsis gaditana]) HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0 Identity = 335/338 (99.11%), Postives = 335/338 (99.11%), Query Frame = 0 Query: 1 MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPSPARSESFRMDGRAYNQLRPVFIDLNT---ASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYMEQEGGGEGGWGGLGEMTRDDRAMRAQDEKHPESVDGDVK 335 MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPSPARSESFRMDGRAYNQLRPVFIDLNT ASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYMEQEGGGEGGWGGLGEMTRDDRAMRAQDEKHPESVDGDVK Sbjct: 1 MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPSPARSESFRMDGRAYNQLRPVFIDLNTVSHASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYMEQEGGGEGGWGGLGEMTRDDRAMRAQDEKHPESVDGDVK 338
BLAST of EWM22788.1 vs. NCBI_GenBank
Match: gi|299470099|emb|CBN78128.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 196.823 bits (499), Expect = 1.006e-57 Identity = 126/304 (41.45%), Postives = 170/304 (55.92%), Query Frame = 0 Query: 1 MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPS------PARSESFRMDGRAYNQLRPVFIDLNT---ASGSAYLEMEHTKVLVAVYGPKARQ--DVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEG-GVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRL 292 M NCY P A N +R +D P+ P+ + + R DGRA +R V++D+ A+GSAY+E HTKV+ AVYGP A+ D FS+EG+L CDF Y+PFA+ GGR RE GG ++D+ER S + Q LE+S+Q+ +L KSVV V V+VLQ DGGE+ A +CAS+ALA+AGIEL+ LV +C V G ++ +DPT EE K G GV+ +ALMP S +VTQ WQ+GR D + ALE+ DG VH +M +L Sbjct: 1 MNNCYKPLAAPAQ-------NDAKSKRRDRDGKAPNGTATKEPSLASTTREDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAM---------PGGR---RETRGG-----KKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSV-------GYCGTQMVLDPTKEEE----------KSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKL 263
BLAST of EWM22788.1 vs. NCBI_GenBank
Match: gi|470512463|ref|XP_004352492.1| (3' exoribonuclease family, domain 1 domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440802076|gb|ELR23015.1| 3' exoribonuclease family, domain 1 domain containing protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 168.318 bits (425), Expect = 1.281e-46 Identity = 100/267 (37.45%), Postives = 150/267 (56.18%), Query Frame = 0 Query: 35 PSPARSESF-----RMDGRAYNQLRPVFID---LNTASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLL 293 P+P R ++F R+DGR+ ++ RPVF+ ++ A+GSAY+EM TKV+ VYGP+ +S++GKL C F+ + FA E G R EE+ S + QALE S++L PKS ++VFVLVL+ GG VGAAI+ ASLALA+AGIE++ LVASC V G + + +DP+ AEE + + +A+MP + E+TQ+ Q G ++ + A+E+ DG ++ +MR+ LL Sbjct: 25 PAPKRPDAFVVEGKRLDGRSPDEFRPVFLKTGVISQAAGSAYIEMNQTKVICGVYGPRQTPKTVYSEKGKLNCFFKLATFA---------ENGERRKYVSD----------KEEKELSMLMVQALEVSLRLETFPKSELDVFVLVLEESGGMVGAAITAASLALADAGIEMYDLVASCSV-------GVVDSHILLDPSIAEEKAAQSN---------LMVAIMPSANEITQMLQTGEIEHTKAPEAIELCLDGCSKIYQMMRQNLL 256
BLAST of EWM22788.1 vs. NCBI_GenBank
Match: gi|1183381827|gb|ORY07238.1| (ribosomal protein S5 domain 2-like protein [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 156.762 bits (395), Expect = 2.549e-42 Identity = 92/260 (35.38%), Postives = 149/260 (57.31%), Query Frame = 0 Query: 44 RMDGRAYNQLRPVFID---LNTASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRD-EERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTD--GGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYME 297 R DGR+ +LRP+F+ ++ A+GSAY+EM+HTK+ A+YGP+ + F+++G+L C+F+++PF+ RR G RD +ER S+ ++QAL SV+L PKSVV++++ VL++D G V AAI+CAS+ALA+AGIE+ LVA+ S G + +V +D T++EE ++G + L+ MP EVT + G + S +A+E D ++++M LLT ++ Sbjct: 34 RSDGRSTEELRPIFLKTGLISQANGSAYIEMQHTKIACAIYGPRQAKKPSFNNKGELNCEFKFTPFSCAKRR---------------------GHLRDAQERELSQIITQALTPSVRLELFPKSVVDIYISVLESDGIGNTVAAAITCASVALADAGIEMLDLVAA-------SSGGFFQSQVILDCTSSEEELQQGS---------LVLSYMPSLNEVTHIVLGGETEVAMSNQAIEQCIDTCTKIYSVMNHSLLTSIQ 256
BLAST of EWM22788.1 vs. NCBI_GenBank
Match: gi|762096232|ref|XP_011430637.1| (PREDICTED: exosome complex component MTR3-like [Crassostrea gigas]) HSP 1 Score: 148.673 bits (374), Expect = 5.173e-39 Identity = 89/251 (35.46%), Postives = 136/251 (54.18%), Query Frame = 0 Query: 44 RMDGRAYNQLRPVFID---LNTASGSAYLEMEHTKVLVAVYGPK-ARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRK 290 R DGR Q+RP+F+ ++ A GSAY+E TKV+ AVYGP+ + EFS +G+L C+F+++ F+ R RR Q +EER S + ALE +V++ K PK+ V V+V VLQ DG + A+++CAS+ALA AGIE++ LV C TPSE V +DPT +E+ E E G G V L LMP +V+ + KG ++ + + D + ++ ++++ Sbjct: 36 RKDGRKPEQVRPIFLKAGIISQARGSAYIEQNETKVMCAVYGPREVTKKEEFSMKGQLTCEFKFATFSCRVRRQYQ--------------------QDNEERDYSCQLQDALEPAVRMDKFPKAQVNVYVTVLQNDGSPLAASLTCASVALANAGIEMYDLVVGCS-ARITPSE------VFIDPTESEDYKAENDNEAG--NGSVTLGLMPSLNQVSAITSKGEVEFELLNKGTKQCVDVCQKLYPVLQQ 257
BLAST of EWM22788.1 vs. NCBI_GenBank
Match: gi|1191038535|ref|XP_020896571.1| (exosome complex component MTR3-like [Exaiptasia pallida] >gi|999977316|gb|KXJ16490.1| Exosome complex component MTR3 [Exaiptasia pallida]) HSP 1 Score: 147.902 bits (372), Expect = 9.478e-39 Identity = 95/279 (34.05%), Postives = 153/279 (54.84%), Query Frame = 0 Query: 30 KDDTGPSPARSESFRMDGRAYNQLRPVFID---LNTASGSAYLEMEHTKVLVAVYGPK-ARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLL-----TYMEQE 299 K+D + R+DGR + LRP+F+ ++ A+GSAYLE ++TK++ AVYGP+ A + EFS +G+L C+F+Y+PF+ + RR G Q EE+ S+ + +ALE+SV L + PKS V++FV VL+ DG + A I CAS+ALA+AGIE+ LVA+C T ++ +E +DP E +E G + +AL+P V+ + Q+G + E+A+ DG ++ +M+ L+ T++ +E Sbjct: 23 KNDPDKPLVXKDGXRVDGRLCDGLRPIFLRAXLVSQANGSAYLETQNTKLICAVYGPREAPRKQEFSMKGRLTCEFKYAPFSCKQRR--------------------GYQQDSEEKGNSQLIVEALESSVFLDRFPKSQVDIFVTVLENDGSALSAGIVCASVALADAGIEMQDLVAAC-----TLAQTSKEC--ILDPNVDELSSQEV-------VGRMTVALLPSVNLVSGLVQEGEMTKEDCEKAVNACIDGCVRIYPVMQDALIKNVKRTFLSKE 267
BLAST of EWM22788.1 vs. NCBI_GenBank
Match: gi|676493138|ref|XP_009066142.1| (hypothetical protein LOTGIDRAFT_236786 [Lottia gigantea] >gi|556094539|gb|ESO83192.1| hypothetical protein LOTGIDRAFT_236786 [Lottia gigantea]) HSP 1 Score: 143.665 bits (361), Expect = 3.448e-37 Identity = 90/261 (34.48%), Postives = 142/261 (54.41%), Query Frame = 0 Query: 44 RMDGRAYNQLRPVFID---LNTASGSAYLEMEHTKVLVAVYGPK--ARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYMEQE 299 R DGR +Q RP+F+ ++ A GSAY+E HTKV+ AVYGP+ R++ +FS +G++ C+F+++ F+ + +R G Q EE+ S + +ALE +VQL K PKS V +++ VLQ DG + A+I+CASLALA AGIE+F LV V + VDP EE G EGGVV L LMP +++ + KG L+ + +A++ + V+ +++ L+ ++++ Sbjct: 36 RRDGRKPDQARPLFLRPGLISQAKGSAYIEQNHTKVICAVYGPREVIRKE-DFSMKGQITCEFKFATFSCKKKR--------------------GHQQDSEEKDYSVQLLEALEPAVQLDKFPKSQVNLYLTVLQNDGSALAASITCASLALAHAGIEMFDLVVGSSVRI-------HGNEILVDPCEEEE-FHSNTNIGVDEGGVV-LGLMPSINQISALTSKGELNFDTTSQAVKTCIQNCQKVYPVLQNCLVNSLKEK 266
BLAST of EWM22788.1 vs. NCBI_GenBank
Match: gi|750961118|gb|KIK18047.1| (hypothetical protein PISMIDRAFT_633097 [Pisolithus microcarpus 441] >gi|750965554|gb|KIK22409.1| hypothetical protein PISMIDRAFT_507637 [Pisolithus microcarpus 441]) HSP 1 Score: 142.51 bits (358), Expect = 7.506e-37 Identity = 87/254 (34.25%), Postives = 135/254 (53.15%), Query Frame = 0 Query: 47 GRAYNQLRPVFID---LNTASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRD-EERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDG--GEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLT 294 GR +RP+F+ ++ A+GSAY+E E TK+ AVYGP+ + +S+ G+L + +++PF+ RR P RD E+RA + V Q++ +S+ L PKS ++VF++V++ DG G + + AS ALA+AGIE+ GLVASC S G R +R+DP +E G V LA MP +T V+Q GR+ +G+ + +E+ D VHA+M + LL+ Sbjct: 37 GRGLADIRPIFLQPGLVSQANGSAYIETEKTKLACAVYGPRQSKTTTYSERGRLNVEVKFAPFSCVRRR---------------------SPLRDAEDRAVAIAVYQSIVSSICLELFPKSTIDVFIVVIENDGIEGCIASGSIAASTALADAGIEMLGLVASC-------SAGVRGDEIRLDPVE---------KEAAAADGTVILACMPALSSITNVYQSGRVSVQGALKCMELCQDRCIDVHAVMAQSLLS 253
BLAST of EWM22788.1 vs. NCBI_GenBank
Match: gi|170087298|ref|XP_001874872.1| (predicted protein [Laccaria bicolor S238N-H82] >gi|164650072|gb|EDR14313.1| predicted protein [Laccaria bicolor S238N-H82]) HSP 1 Score: 141.354 bits (355), Expect = 1.754e-36 Identity = 82/253 (32.41%), Postives = 138/253 (54.55%), Query Frame = 0 Query: 47 GRAYNQLRPVFID---LNTASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRD-EERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDG--GEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLL 293 RA +RP+F+ +N A+GSAY+E ++TK+ AV+GP+ ++V F+++G+L D +++PF+ RR P RD E+R+ + + QA+ +SV+L LPKSV+++F+ ++++DG G V A + AS AL +AGIE+FGLVASC A G+ W +DP+ RE + G + L+ MP V+ +WQ G ++T ++ +H+++ + LL Sbjct: 37 NRASVDIRPIFLQPGLINQATGSAYIETQNTKIACAVFGPRQAKNVAFNEKGRLNVDVKFAPFSCDRRR---------------------APMRDAEDRSIAMAIHQAISSSVRLDVLPKSVIDIFITIVESDGIEGCVAAGVIVASTALTDAGIEIFGLVASCSAAAV----GEDIW---LDPSL---------RESQESRGTLVLSCMPALSTVSSIWQTGNMNTGDVLACMDACNSRCTDIHSVIAQVLL 252 The following BLAST results are available for this feature:
BLAST of EWM22788.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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