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Properties
| Property Name | Value |
|---|
| Product | Exoribonuclease, phosphorolytic domain 1 |
| Orig transcript id | gnl|cribi|Naga_100349g4.4134.mrna |
| Orig protein id | gnl|cribi|Naga_100349g4.4134 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037247.1 | supercontig | KK037247.1:67805..69334 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7907 ID=rna7907|Name=rna7907|organism=Nannochloropsis gaditana|type=mRNA|length=3005bp
CTTTTTGATAGATCAACCTTGCCACAAGAGTCTACGAAGCCTGCATACAG
GACCGGCGGCTTCAAGCGAAGTGGGAGACAATATCCTTGTGCGCATAGCA
GCGGTACAGTCTATGTTGCGCGGTTGGTGCGTAGGCATAAGTGGGTTTAT
TGCCCCTGAAATGCTTTCCGACACTGGCGGCGGGAGAGATCCTCAACATG
ACATATCGTTGCACTTCCAGACAACCAAGGCACCCACCCCTCGTGCATGA
TGTCGACCACAAAACTTGAATTGATATGAATGAACACCATATTGTGCACA
CGGGCCTTTCGGATGGATCGTGGCGACCAAAAAGGGCCTGGCTCGGATTT
ACGTGTTGTGGTGACGGACATCGATCTTGTTCCGTCCCCTGTACGTGGCA
CTGAAGCCTATCACTGAAGCCTATTACTATCAATATTTCCCTGCCATGAC
ACAAGCGACAAAATGGACCTAGAAAACTGTCGGGATTTCATAATATTTCT
GACACGTTATACTCGGATTCGATTCAGTATTTTCATGAAAGACAGTCCGA
CTCCCCCTTTGGAGCACCTGCCTTCAGAACACTTGAGTGCGGCGGATGCC
ATCGCACACAACGACCGCCGGGATAAAATGCCTCCCAAACCATACTTAAG
CATCCATCGCTTACCCCACCCCCCGGCTCCATTAATTTTTGTCCTTCGCC
TCTCCACCTTGCTTCTGTGCATGGCCGCACTTTTAATTATTTCCTCTTCC
ACGCCGGGGATCACTGTACTGATTCAAGGACTTATTTGCATCTTCGGCGC
CATTTTGTCTTGCCAAGCGGCCGCGTACCTTGAAAGAATCCACTCTGGGC
TGGAACAGCAGCACGATGAAGAGATTTCCGTGGCCCTGCGCTCAGGCCCC
AAGCGCATCTCCTTCGTAACCTCCCCTCCACGATCGACGACCAGGCTGCC
CGTAACGCGGATAACCTTCCCACAAGATCTCGCTCACGCAGAAGAGAATG
GGGAAGAGAATCATCATCAGAATACTTCACTCCACCACATGGCGGGGCGT
GGCAGGGGAAGGGAGGCGGAGGAAGGGAGAGGGAAGGTGGTGGAGGAGGA
GGAGGTGGTCGTTCCCCAGGGGGACCACGGCGTGGCAGGACAACATGGGT
GTGGGTGGGGGCACTACCAGGACTATGCGGAGGACAGGGAGAAAGGACGG
GGTGGGGGAGCTGCATGGGATCAGGGAGGGGAGGATCCAGTCCTGCCACT
CCCCGCGCCGACAGTCCTGCCTCCTTCCTTCCCTTCCTCCCTCCCTCCCT
CCCTTCCTCCCCATAATCGTCTTTCCCGCGATAAGCGATTGACCTTCCTC
CATTCTCTATCCGCCGTCCTACTTTTCGTCGACGCCCTCTGGGTCTTTAG
CCTCGCGGGGACCGCTTTCTCTCGACCTCCCTCCTTCCCGCCCTCCCCCC
CTGCCTCGGATGCCCCTTCCTCCCTCCGAACGCGGGGAAGAGGAAGGGGC
GGGGAAGAGGGTATTCTCCGGGTAGTCTTGCTCTGTGTGATTGGAATCCT
GTGCCTCGTTGCCAGTGGGGCTGCCGTTGGTGCTACCTTGCGTGTCAGAT
TTTATGGGGGACTGAGGGGATGTGAAGGCGAGGTGGCCGTGGAAGGGAAG
GAGGCGGGAAACGCAGCACGGCACCGGCTTTCGTCTGGATCGGGGATGAA
GGAGGGAGGCGCGGGAGCCAAGGAAAAGGGGGAGGGAAGGAAGCAGGACC
AGGAGGAGGAGGAGGGGAGGGAGGACGGGGCGGAGGCGGGGGGGTGGACA
GTCATTGGGATTCATGACGGACCTATTCCCGGCGAGGAACGTGCAGGAGA
CGAAAGAGAGGAGGAAGCGAGGGAGGGCGGGAGGGAGGGCAGGCAGCTGT
CTTCGTGCCTGCAACTTCAAGCGGCCTCGGGCCCGGCTTTCCCCTCCCTT
CCCTCTTCCCTCTTCGCCGGGTACCCGTTCCGCGTGCCGTTCGAGGGGAA
AGCCGCAGCAGTCCAGGGACGCCCCTCCCCCGCCTTCGCAAGCAACACAA
CCGCCACACCCTCAGCAATCGCTGCACAAGCAGCCTTGGGAGCGTGTGGA
CCGGGAAAGAAGGGGAGGATCCCCTCCAGCCGGCTGCCCCCGCCTTGTCG
CCAGCGTTCTTCCTCCTGGGAGGACGACGCAAAGCCCGCCATGGCACCAG
TAGCCTTGGTTAAGGAAACTTCACCCCGGGATACCACCAACCTTCTGTAT
GGGGCCTCCGAGGATATTCGGGAGGAAGAAACGCTTGCTGTTCCTACCCC
TCTCTCGTCTCACCGCTTCCCACGGAGCGCCGACACCTCAACCGTCCAGG
AGGGGCAGGACGCTCCAGGCACGCCCACCCTCTGCCCCGACCTCGCCCTT
GGCAGCCTTGGGCCCAAGAGTCTCCGGCGCTCCTCCTCTTTCGTCCTTCC
CACCTCTACCACGCGCGGTGCACTCCCTCTGCACCTTCCCCCACCCCCCC
GGTCGGCCTCCTTCGTCCTCGCACCCGCCCCTTCCCCTGGCAACAACCAA
GGCATGCGGGCTCCGACCGCTGAAAGGGAAACAAGGGGGCTACCACTGGC
GGTAGCCATGGATGCACGGTTAGTCATGCGCGTCCCGCTACGGACCTGAG
GAAAATGCACGCCTCGACCGTCACCAGCCGTTAACTGTTTGAATTTGAAA
AGAGAAAGCCACAGCCTCCACCGATGGGCGTTGGGAGTGGTGGGGTACGG
GTGGAGTGTATATGTCTGTGAGCGGAAGGCTGGAGCCAGCGCCTGGAGCT
CTTTGTCTTTGGGAATGGGATGTCACCTGGAGGTGATCGGTACGCCGGAA
CCCCTGTGACGGGCAACAGCCTATACTCGACGTGCCCCGGTCGGGGTGTG
ACTGTGGAATGAGGGTCTCCCCACCTCAAAGCATGCGACGCCCGCCTTGT
AAAGAGCACGGGTACTTTGAAAATAAAAGGGGCGTCTGACAGATACTCCA
CGGCC back to topprotein sequence of rna7907 >rna7907-protein ID=rna7907-protein|Name=rna7907|organism=Nannochloropsis gaditana|type=polypeptide|length=335bp
MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPSPARSESFRMDGRAY
NQLRPVFIDLNTASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICD
FRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQA
LEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGL
VASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALM
PVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYMEQEG
GGEGGWGGLGEMTRDDRAMRAQDEKHPESVDGDVK back to topmRNA from alignment at KK037247.1:67805..69334- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7907 ID=rna7907|Name=rna7907|organism=Nannochloropsis gaditana|type=mRNA|length=1530bp|location=Sequence derived from alignment at KK037247.1:67805..69334- (Nannochloropsis gaditana)
GGACAACACGTGCATAATTGCTTTTCCAGGCAAGCAACCACCCGTACGAT
CTCGCGAGGCGCTCGCATGGCATGTGTGACGCAATCTGAAGCCTTGCGCT
ACTCACGGCTCAACTTATGTCGTTTTTTAAGGCCTTCTTGTAAAGCCTTC
ATAACCCTCCCATTGACCTCCTCCCGTGGTTTCACAAGCCTCAGGGGTTG
GCATTATGTATAATTGCTACACACCTCGCGTCGCCACGAAGACACAAGTT
AGCACGCTACAAACCAACAGCGAAATTCAAGCGCAAAGAAAAAAGGATGA
CACAGGACCATCACCGGCGAGAAGCGAGGTAAAGGCAGCTTGACATGTTT
CATAGCTCGCATCCCTCTGTATTTTGCACTCCTCATTTCGGCAAACAGCT
GTCGAAGAAAGAAGCGTGGCTCATTTCTTGCTAAACGACAGTCTTTTCGC
ATGGATGGACGGGCCTACAACCAGCTTCGGCCTGTATTTATAGACCTGAA
TACGGTCAGTCATGTACGTGCCATTCCATTCCCTATACTTCCTCTTATAA
AGAAAGGATGCAGACCTCCTCGCGTCTTTTTATTCCTCCCTTGGCTACAG
GACGCCTTCTTATAGCTTTCTTTCACGCGCTCAATTGATTGTCCTTCCTT
GCGTCCTCCTATTTCTCGTCCTATATCAACAGGCCTCTGGCTCGGCATAT
TTGGAAATGGAGCATACCAAAGTGCTCGTTGCGGTGTACGGACCCAAAGC
ACGTCAAGACGTGGAATTCAGTGACGAAGGTAAACTTATATGCGATTTCA
GGTACTCTCCCTTCGCCCTCCGGGCCCGCAGGCCGACGGGGAAGGAAAAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGAGGTGGGGGGGGAGGGCC
CCAACGGGACGAGGAACGTGCCGCTTCCCGGACGGTCTCGCAAGCCTTGG
AGGCGTCAGTGCAGCTGGCAAAGCTGCCCAAAAGCGTGGTGGAAGTCTTC
GTCTTAGTCTTGCAGACAGACGGGGGCGAGGTCGGAGCGGCCATCTCCTG
CGCCTCCCTGGCACTCGCCGAGGCGGGTATCGAACTCTTCGGGCTGGTCG
CGTCCTGTGAAGTGGTGGCTTTCACGCCCAGCGAGGGTAAAAGGGAATGG
AGGGTCCGCGTAGACCCGACCGCGGCGGAGGAAGGCGGGGAGGAGGGCGG
ACGGGAGGGTGGGAAGGAGGGAGGGGTGGTAGGGTTGGCCTTGATGCCGG
TATCGGGTGAAGTCACGCAAGTATGGCAGAAGGGTCGTCTGGACACTCGA
GGGAGCGAAAGGGCCTTGGAAATGGCAGCGGACGGGGCTAGGATGGTGCA
TGCATTGATGCGGAAGCGCCTACTGACGTACATGGAGCAGGAGGGCGGAG
GGGAGGGGGGGTGGGGAGGGCTTGGAGAGATGACGAGGGATGACCGGGCA
ATGCGGGCACAAGACGAGAAGCACCCAGAGAGCGTGGACGGAGATGTGAA
ATAAAGTAAGAAAAAGTGAAAGTAAAGCCG back to topCoding sequence (CDS) from alignment at KK037247.1:67805..69334- >rna7907 ID=rna7907|Name=rna7907|organism=Nannochloropsis gaditana|type=CDS|length=3024bp|location=Sequence derived from alignment at KK037247.1:67805..69334- (Nannochloropsis gaditana)
GCCTCTGGCTCGGCATATTTGGAAATGGAGCATACCAAAGTGCTCGTTGC
GGTGTACGGACCCAAAGCACGTCAAGACGTGGAATTCAGTGACGAAGGTA
AACTTATATGCGATTTCAGGTACTCTCCCTTCGCCCTCCGGGCCCGCAGG
CCGACGGGGAAGGAAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGG
AGGTGGGGGGGGAGGGCCCCAACGGGACGAGGAACGTGCCGCTTCCCGGA
CGGTCTCGCAAGCCTTGGAGGCGTCAGTGCAGCTGGCAAAGCTGCCCAAA
AGCGTGGTGGAAGTCTTCGTCTTAGTCTTGCAGACAGACGGGGGCGAGGT
CGGAGCGGCCATCTCCTGCGCCTCCCTGGCACTCGCCGAGGCGGGTATCG
AACTCTTCGGGCTGGTCGCGTCCTGTGAAGTGGTGGCTTTCACGCCCAGC
GAGGGTAAAAGGGAATGGAGGGTCCGCGTAGACCCGACCGCGGCGGAGGA
AGGCGGGGAGGAGGGCGGACGGGAGGGTGGGAAGGAGGGAGGGGTGGTAG
GGTTGGCCTTGATGCCGGTATCGGGTGAAGTCACGCAAGTATGGCAGAAG
GGTCGTCTGGACACTCGAGGGAGCGAAAGGGCCTTGGAAATGGCAGCGGA
CGGGGCTAGGATGGTGCATGCATTGATGCGGAAGCGCCTACTGACGTACA
TGGAGCAGGAGGGCGGAGGGGAGGGGGGGTGGGGAGGGCTTGGAGAGATG
ACGAGGGATGACCGGGCAATGCGGGCACAAGACGAGAAGCACCCAGAGAG
CGTGGACGGAGATGTGAAATAATCTTTTCGCATGGATGGACGGGCCTACA
ACCAGCTTCGGCCTGTATTTATAGACCTGAATACGATGTATAATTGCTAC
ACACCTCGCGTCGCCACGAAGACACAAGTTAGCACGCTACAAACCAACAG
CGAAATTCAAGCGCAAAGAAAAAAGGATGACACAGGACCATCACCGGCGA
GAAGCGAGGCCTCTGGCTCGGCATATTTGGAAATGGAGCATACCAAAGTG
CTCGTTGCGGTGTACGGACCCAAAGCACGTCAAGACGTGGAATTCAGTGA
CGAAGGTAAACTTATATGCGATTTCAGGTACTCTCCCTTCGCCCTCCGGG
CCCGCAGGCCGACGGGGAAGGAAAAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGGGAGGTGGGGGGGGAGGGCCCCAACGGGACGAGGAACGTGCCGC
TTCCCGGACGGTCTCGCAAGCCTTGGAGGCGTCAGTGCAGCTGGCAAAGC
TGCCCAAAAGCGTGGTGGAAGTCTTCGTCTTAGTCTTGCAGACAGACGGG
GGCGAGGTCGGAGCGGCCATCTCCTGCGCCTCCCTGGCACTCGCCGAGGC
GGGTATCGAACTCTTCGGGCTGGTCGCGTCCTGTGAAGTGGTGGCTTTCA
CGCCCAGCGAGGGTAAAAGGGAATGGAGGGTCCGCGTAGACCCGACCGCG
GCGGAGGAAGGCGGGGAGGAGGGCGGACGGGAGGGTGGGAAGGAGGGAGG
GGTGGTAGGGTTGGCCTTGATGCCGGTATCGGGTGAAGTCACGCAAGTAT
GGCAGAAGGGTCGTCTGGACACTCGAGGGAGCGAAAGGGCCTTGGAAATG
GCAGCGGACGGGGCTAGGATGGTGCATGCATTGATGCGGAAGCGCCTACT
GACGTACATGGAGCAGGAGGGCGGAGGGGAGGGGGGGTGGGGAGGGCTTG
GAGAGATGACGAGGGATGACCGGGCAATGCGGGCACAAGACGAGAAGCAC
CCAGAGAGCGTGGACGGAGATGTGAAATAATCTTTTCGCATGGATGGACG
GGCCTACAACCAGCTTCGGCCTGTATTTATAGACCTGAATACGATGTATA
ATTGCTACACACCTCGCGTCGCCACGAAGACACAAGTTAGCACGCTACAA
ACCAACAGCGAAATTCAAGCGCAAAGAAAAAAGGATGACACAGGACCATC
ACCGGCGAGAAGCGAGGCCTCTGGCTCGGCATATTTGGAAATGGAGCATA
CCAAAGTGCTCGTTGCGGTGTACGGACCCAAAGCACGTCAAGACGTGGAA
TTCAGTGACGAAGGTAAACTTATATGCGATTTCAGGTACTCTCCCTTCGC
CCTCCGGGCCCGCAGGCCGACGGGGAAGGAAAAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGGGAGGTGGGGGGGGAGGGCCCCAACGGGACGAGGAA
CGTGCCGCTTCCCGGACGGTCTCGCAAGCCTTGGAGGCGTCAGTGCAGCT
GGCAAAGCTGCCCAAAAGCGTGGTGGAAGTCTTCGTCTTAGTCTTGCAGA
CAGACGGGGGCGAGGTCGGAGCGGCCATCTCCTGCGCCTCCCTGGCACTC
GCCGAGGCGGGTATCGAACTCTTCGGGCTGGTCGCGTCCTGTGAAGTGGT
GGCTTTCACGCCCAGCGAGGGTAAAAGGGAATGGAGGGTCCGCGTAGACC
CGACCGCGGCGGAGGAAGGCGGGGAGGAGGGCGGACGGGAGGGTGGGAAG
GAGGGAGGGGTGGTAGGGTTGGCCTTGATGCCGGTATCGGGTGAAGTCAC
GCAAGTATGGCAGAAGGGTCGTCTGGACACTCGAGGGAGCGAAAGGGCCT
TGGAAATGGCAGCGGACGGGGCTAGGATGGTGCATGCATTGATGCGGAAG
CGCCTACTGACGTACATGGAGCAGGAGGGCGGAGGGGAGGGGGGGTGGGG
AGGGCTTGGAGAGATGACGAGGGATGACCGGGCAATGCGGGCACAAGACG
AGAAGCACCCAGAGAGCGTGGACGGAGATGTGAAATAATCTTTTCGCATG
GATGGACGGGCCTACAACCAGCTTCGGCCTGTATTTATAGACCTGAATAC
GATGTATAATTGCTACACACCTCGCGTCGCCACGAAGACACAAGTTAGCA
CGCTACAAACCAACAGCGAAATTCAAGCGCAAAGAAAAAAGGATGACACA
GGACCATCACCGGCGAGAAGCGAG back to top
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